data_8UCT # _model_server_result.job_id w822VwZSfwLuHbLsnT8XKA _model_server_result.datetime_utc '2024-11-18 18:30:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uct # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8UCT # _exptl.entry_id 8UCT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8UCT _cell.length_a 53.216 _cell.length_b 53.216 _cell.length_c 545.58 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UCT _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -90.93 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 138 n n S1 HS1 DTT sing 139 n n C1 C2 DTT sing 140 n n C1 H11 DTT sing 141 n n C1 H12 DTT sing 142 n n C2 O2 DTT sing 143 n n C2 C3 DTT sing 144 n n C2 H2 DTT sing 145 n n O2 HO2 DTT sing 146 n n C3 O3 DTT sing 147 n n C3 C4 DTT sing 148 n n C3 H3 DTT sing 149 n n O3 HO3 DTT sing 150 n n C4 S4 DTT sing 151 n n C4 H41 DTT sing 152 n n C4 H42 DTT sing 153 n n S4 HS2 DTT sing 154 n n # _atom_sites.entry_id 8UCT _atom_sites.fract_transf_matrix[1][1] 0.018791 _atom_sites.fract_transf_matrix[1][2] 0.010849 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DTT A 1 601 602 DTT DTT . C 3 SO4 A 1 602 1 SO4 SO4 . D 3 SO4 A 1 603 2 SO4 SO4 . E 4 3YT A 1 604 1 3YT 3YT . F 5 HOH A 1 701 10 HOH HOH . F 5 HOH A 2 702 3 HOH HOH . F 5 HOH A 3 703 7 HOH HOH . F 5 HOH A 4 704 6 HOH HOH . F 5 HOH A 5 705 2 HOH HOH . F 5 HOH A 6 706 4 HOH HOH . F 5 HOH A 7 707 9 HOH HOH . F 5 HOH A 8 708 12 HOH HOH . F 5 HOH A 9 709 14 HOH HOH . F 5 HOH A 10 710 1 HOH HOH . F 5 HOH A 11 711 16 HOH HOH . F 5 HOH A 12 712 11 HOH HOH . F 5 HOH A 13 713 19 HOH HOH . F 5 HOH A 14 714 13 HOH HOH . F 5 HOH A 15 715 25 HOH HOH . F 5 HOH A 16 716 20 HOH HOH . F 5 HOH A 17 717 17 HOH HOH . F 5 HOH A 18 718 22 HOH HOH . F 5 HOH A 19 719 15 HOH HOH . F 5 HOH A 20 720 24 HOH HOH . F 5 HOH A 21 721 18 HOH HOH . F 5 HOH A 22 722 21 HOH HOH . F 5 HOH A 23 723 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . B 2 -22.401 -0.033 -19.372 1 108.38 ? S1 DTT 601 A 1 HETATM 2 C C1 DTT . . . B 2 -22.688 0.519 -17.682 1 108.44 ? C1 DTT 601 A 1 HETATM 3 C C2 DTT . . . B 2 -22.531 2.019 -17.53 1 108.52 ? C2 DTT 601 A 1 HETATM 4 O O2 DTT . . . B 2 -23.476 2.633 -18.369 1 108.51 ? O2 DTT 601 A 1 HETATM 5 C C3 DTT . . . B 2 -21.115 2.449 -17.873 1 108.59 ? C3 DTT 601 A 1 HETATM 6 O O3 DTT . . . B 2 -21.024 3.85 -17.77 1 108.58 ? O3 DTT 601 A 1 HETATM 7 C C4 DTT . . . B 2 -20.119 1.802 -16.912 1 108.62 ? C4 DTT 601 A 1 HETATM 8 S S4 DTT . . . B 2 -18.435 2.437 -17.106 1 108.63 ? S4 DTT 601 A 1 HETATM 9 H HS1 DTT . . . B 2 -23.193 0.428 -19.658 0 115.72 ? HS1 DTT 601 A 1 HETATM 10 H H11 DTT . . . B 2 -21.984 0.017 -17.019 0 118.5 ? H11 DTT 601 A 1 HETATM 11 H H12 DTT . . . B 2 -23.696 0.234 -17.38 0 119.03 ? H12 DTT 601 A 1 HETATM 12 H H2 DTT . . . B 2 -22.709 2.324 -16.499 0 120.58 ? H2 DTT 601 A 1 HETATM 13 H HO2 DTT . . . B 2 -23.197 2.535 -19.303 0 100.65 ? HO2 DTT 601 A 1 HETATM 14 H H3 DTT . . . B 2 -20.878 2.138 -18.891 0 117.77 ? H3 DTT 601 A 1 HETATM 15 H HO3 DTT . . . B 2 -20.164 4.092 -17.366 0 109.08 ? HO3 DTT 601 A 1 HETATM 16 H H41 DTT . . . B 2 -20.113 0.725 -17.081 0 108.37 ? H41 DTT 601 A 1 HETATM 17 H H42 DTT . . . B 2 -20.449 1.979 -15.889 0 107.83 ? H42 DTT 601 A 1 HETATM 18 H HS2 DTT . . . B 2 -18.15 1.907 -16.359 0 121.35 ? HS2 DTT 601 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 18 #