data_8UDC # _model_server_result.job_id epMKM0xfzmxg_Bmgu322TQ _model_server_result.datetime_utc '2024-11-20 04:42:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8udc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 8UDC # _exptl.entry_id 8UDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 368.456 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4P)-4-(2-amino-4-methyl-1,3-thiazol-5-yl)-N-[4-(morpholin-4-yl)phenyl]pyrimidin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8UDC _cell.length_a 53.021 _cell.length_b 53.021 _cell.length_c 546.158 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H20 N6 O S' _chem_comp.formula_weight 368.456 _chem_comp.id WCK _chem_comp.mon_nstd_flag . _chem_comp.name (4P)-4-(2-amino-4-methyl-1,3-thiazol-5-yl)-N-[4-(morpholin-4-yl)phenyl]pyrimidin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C WCK sing 396 n n C N1 WCK doub 397 n y C S WCK sing 398 n y N1 C1 WCK sing 399 n y S C3 WCK sing 400 n y C1 C2 WCK sing 401 n n C1 C3 WCK doub 402 n y C3 C4 WCK sing 403 n n C4 C7 WCK doub 404 n y C4 N2 WCK sing 405 n y C7 C6 WCK sing 406 n y C16 O WCK sing 407 n n C16 C17 WCK sing 408 n n O C15 WCK sing 409 n n C17 N5 WCK sing 410 n n N2 C5 WCK doub 411 n y C6 N3 WCK doub 412 n y C10 C9 WCK doub 413 n y C10 C11 WCK sing 414 n y N5 C11 WCK sing 415 n n N5 C14 WCK sing 416 n n C15 C14 WCK sing 417 n n C9 C8 WCK sing 418 n y C5 N3 WCK sing 419 n y C5 N4 WCK sing 420 n n C11 C12 WCK doub 421 n y C8 N4 WCK sing 422 n n C8 C13 WCK doub 423 n y C12 C13 WCK sing 424 n y C14 H141 WCK sing 425 n n C14 H142 WCK sing 426 n n C15 H152 WCK sing 427 n n C15 H151 WCK sing 428 n n C16 H162 WCK sing 429 n n C16 H161 WCK sing 430 n n C17 H171 WCK sing 431 n n C17 H172 WCK sing 432 n n C12 H12 WCK sing 433 n n C13 H13 WCK sing 434 n n C10 H10 WCK sing 435 n n C9 H9 WCK sing 436 n n N4 H1 WCK sing 437 n n C6 H6 WCK sing 438 n n C7 H7C1 WCK sing 439 n n C2 H2C3 WCK sing 440 n n C2 H2C1 WCK sing 441 n n C2 H2C2 WCK sing 442 n n N HN1 WCK sing 443 n n N HN2 WCK sing 444 n n # _atom_sites.entry_id 8UDC _atom_sites.fract_transf_matrix[1][1] 0.01886 _atom_sites.fract_transf_matrix[1][2] 0.010889 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021778 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 601 601 PEG PEG . C 3 SO4 A 1 602 1 SO4 SO4 . D 4 WCK A 1 603 1 WCK LIG . E 5 HOH A 1 701 1 HOH HOH . E 5 HOH A 2 702 6 HOH HOH . E 5 HOH A 3 703 13 HOH HOH . E 5 HOH A 4 704 14 HOH HOH . E 5 HOH A 5 705 8 HOH HOH . E 5 HOH A 6 706 3 HOH HOH . E 5 HOH A 7 707 5 HOH HOH . E 5 HOH A 8 708 2 HOH HOH . E 5 HOH A 9 709 7 HOH HOH . E 5 HOH A 10 710 15 HOH HOH . E 5 HOH A 11 711 4 HOH HOH . E 5 HOH A 12 712 12 HOH HOH . E 5 HOH A 13 713 11 HOH HOH . E 5 HOH A 14 714 9 HOH HOH . E 5 HOH A 15 715 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 WCK . . . D 4 -37.643 25.077 -25.333 1 102.29 ? C14 WCK 603 A 1 HETATM 2 C C15 WCK . . . D 4 -38.269 26.35 -26.012 1 109.53 ? C15 WCK 603 A 1 HETATM 3 O O WCK . . . D 4 -37.558 26.737 -27.223 1 121.06 ? O WCK 603 A 1 HETATM 4 C C16 WCK . . . D 4 -37.751 25.615 -28.145 1 104.5 ? C16 WCK 603 A 1 HETATM 5 C C17 WCK . . . D 4 -36.978 24.374 -27.631 1 102.26 ? C17 WCK 603 A 1 HETATM 6 N N5 WCK . . . D 4 -37.501 23.915 -26.297 1 104.11 ? N5 WCK 603 A 1 HETATM 7 C C11 WCK . . . D 4 -37.498 22.49 -25.938 1 102.47 ? C11 WCK 603 A 1 HETATM 8 C C12 WCK . . . D 4 -37.992 22 -24.722 1 102.37 ? C12 WCK 603 A 1 HETATM 9 C C13 WCK . . . D 4 -37.929 20.589 -24.422 1 102.4 ? C13 WCK 603 A 1 HETATM 10 C C10 WCK . . . D 4 -37.029 21.562 -26.885 1 103.11 ? C10 WCK 603 A 1 HETATM 11 C C9 WCK . . . D 4 -36.99 20.166 -26.601 1 102.39 ? C9 WCK 603 A 1 HETATM 12 C C8 WCK . . . D 4 -37.437 19.673 -25.357 1 102.44 ? C8 WCK 603 A 1 HETATM 13 N N4 WCK . . . D 4 -37.407 18.202 -25.058 1 102.54 ? N4 WCK 603 A 1 HETATM 14 C C5 WCK . . . D 4 -36.906 17.198 -26.023 1 102.64 ? C5 WCK 603 A 1 HETATM 15 N N2 WCK . . . D 4 -36.194 17.675 -27.149 1 103.99 ? N2 WCK 603 A 1 HETATM 16 N N3 WCK . . . D 4 -37.181 15.91 -25.783 1 102.66 ? N3 WCK 603 A 1 HETATM 17 C C6 WCK . . . D 4 -36.751 14.978 -26.693 1 102.7 ? C6 WCK 603 A 1 HETATM 18 C C7 WCK . . . D 4 -36.018 15.381 -27.886 1 105.28 ? C7 WCK 603 A 1 HETATM 19 C C4 WCK . . . D 4 -35.75 16.756 -28.074 1 107.75 ? C4 WCK 603 A 1 HETATM 20 C C3 WCK . . . D 4 -35.032 17.227 -29.252 1 103 ? C3 WCK 603 A 1 HETATM 21 S S WCK . . . D 4 -34.35 16.075 -30.42 1 104.05 ? S WCK 603 A 1 HETATM 22 C C1 WCK . . . D 4 -34.757 18.507 -29.727 1 106.29 ? C1 WCK 603 A 1 HETATM 23 C C2 WCK . . . D 4 -35.073 19.543 -29.035 1 104.36 ? C2 WCK 603 A 1 HETATM 24 N N1 WCK . . . D 4 -34.001 18.555 -31.01 1 118.54 ? N1 WCK 603 A 1 HETATM 25 C C WCK . . . D 4 -33.723 17.309 -31.529 1 115.03 ? C WCK 603 A 1 HETATM 26 N N WCK . . . D 4 -33.055 16.992 -32.735 1 108.49 ? N WCK 603 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #