data_8UDI # _model_server_result.job_id ZUwQIi6uNZLW7hcpl1O1CA _model_server_result.datetime_utc '2024-11-26 03:26:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8udi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8UDI # _exptl.entry_id 8UDI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'D-GLUTAMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UDI _cell.length_a 62.317 _cell.length_b 81.969 _cell.length_c 113.937 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UDI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id DGL _chem_comp.mon_nstd_flag . _chem_comp.name 'D-GLUTAMIC ACID' _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DGL sing 83 n n N H DGL sing 84 n n N H2 DGL sing 85 n n CA C DGL sing 86 n n CA CB DGL sing 87 n n CA HA DGL sing 88 n n C O DGL doub 89 n n C OXT DGL sing 90 n n CB CG DGL sing 91 n n CB HB2 DGL sing 92 n n CB HB3 DGL sing 93 n n CG CD DGL sing 94 n n CG HG2 DGL sing 95 n n CG HG3 DGL sing 96 n n CD OE1 DGL doub 97 n n CD OE2 DGL sing 98 n n OE2 HE2 DGL sing 99 n n OXT HXT DGL sing 100 n n # _atom_sites.entry_id 8UDI _atom_sites.fract_transf_matrix[1][1] 0.016047 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DGL A 1 301 301 DGL DGL . D 3 WAW A 1 302 302 WAW LIG . E 4 CL A 1 303 2 CL CL . F 2 DGL B 1 301 301 DGL DGL . G 4 CL B 1 302 1 CL CL . H 5 HOH A 1 401 175 HOH HOH . H 5 HOH A 2 402 41 HOH HOH . H 5 HOH A 3 403 179 HOH HOH . H 5 HOH A 4 404 37 HOH HOH . H 5 HOH A 5 405 4 HOH HOH . H 5 HOH A 6 406 50 HOH HOH . H 5 HOH A 7 407 135 HOH HOH . H 5 HOH A 8 408 44 HOH HOH . H 5 HOH A 9 409 49 HOH HOH . H 5 HOH A 10 410 62 HOH HOH . H 5 HOH A 11 411 78 HOH HOH . H 5 HOH A 12 412 20 HOH HOH . H 5 HOH A 13 413 19 HOH HOH . H 5 HOH A 14 414 67 HOH HOH . H 5 HOH A 15 415 94 HOH HOH . H 5 HOH A 16 416 42 HOH HOH . H 5 HOH A 17 417 51 HOH HOH . H 5 HOH A 18 418 89 HOH HOH . H 5 HOH A 19 419 10 HOH HOH . H 5 HOH A 20 420 14 HOH HOH . H 5 HOH A 21 421 11 HOH HOH . H 5 HOH A 22 422 31 HOH HOH . H 5 HOH A 23 423 2 HOH HOH . H 5 HOH A 24 424 165 HOH HOH . H 5 HOH A 25 425 146 HOH HOH . H 5 HOH A 26 426 134 HOH HOH . H 5 HOH A 27 427 56 HOH HOH . H 5 HOH A 28 428 84 HOH HOH . H 5 HOH A 29 429 147 HOH HOH . H 5 HOH A 30 430 108 HOH HOH . H 5 HOH A 31 431 64 HOH HOH . H 5 HOH A 32 432 61 HOH HOH . H 5 HOH A 33 433 126 HOH HOH . H 5 HOH A 34 434 182 HOH HOH . H 5 HOH A 35 435 104 HOH HOH . H 5 HOH A 36 436 59 HOH HOH . H 5 HOH A 37 437 96 HOH HOH . H 5 HOH A 38 438 102 HOH HOH . H 5 HOH A 39 439 80 HOH HOH . H 5 HOH A 40 440 68 HOH HOH . H 5 HOH A 41 441 40 HOH HOH . H 5 HOH A 42 442 129 HOH HOH . H 5 HOH A 43 443 116 HOH HOH . H 5 HOH A 44 444 130 HOH HOH . H 5 HOH A 45 445 150 HOH HOH . H 5 HOH A 46 446 107 HOH HOH . H 5 HOH A 47 447 23 HOH HOH . H 5 HOH A 48 448 46 HOH HOH . H 5 HOH A 49 449 55 HOH HOH . H 5 HOH A 50 450 173 HOH HOH . H 5 HOH A 51 451 181 HOH HOH . H 5 HOH A 52 452 177 HOH HOH . H 5 HOH A 53 453 152 HOH HOH . H 5 HOH A 54 454 163 HOH HOH . H 5 HOH A 55 455 142 HOH HOH . H 5 HOH A 56 456 120 HOH HOH . H 5 HOH A 57 457 170 HOH HOH . H 5 HOH A 58 458 159 HOH HOH . H 5 HOH A 59 459 158 HOH HOH . H 5 HOH A 60 460 87 HOH HOH . H 5 HOH A 61 461 45 HOH HOH . H 5 HOH A 62 462 65 HOH HOH . H 5 HOH A 63 463 75 HOH HOH . H 5 HOH A 64 464 172 HOH HOH . H 5 HOH A 65 465 82 HOH HOH . H 5 HOH A 66 466 118 HOH HOH . H 5 HOH A 67 467 127 HOH HOH . H 5 HOH A 68 468 76 HOH HOH . H 5 HOH A 69 469 136 HOH HOH . H 5 HOH A 70 470 157 HOH HOH . I 5 HOH B 1 401 17 HOH HOH . I 5 HOH B 2 402 57 HOH HOH . I 5 HOH B 3 403 123 HOH HOH . I 5 HOH B 4 404 8 HOH HOH . I 5 HOH B 5 405 72 HOH HOH . I 5 HOH B 6 406 176 HOH HOH . I 5 HOH B 7 407 3 HOH HOH . I 5 HOH B 8 408 35 HOH HOH . I 5 HOH B 9 409 103 HOH HOH . I 5 HOH B 10 410 1 HOH HOH . I 5 HOH B 11 411 154 HOH HOH . I 5 HOH B 12 412 183 HOH HOH . I 5 HOH B 13 413 30 HOH HOH . I 5 HOH B 14 414 13 HOH HOH . I 5 HOH B 15 415 52 HOH HOH . I 5 HOH B 16 416 18 HOH HOH . I 5 HOH B 17 417 111 HOH HOH . I 5 HOH B 18 418 34 HOH HOH . I 5 HOH B 19 419 91 HOH HOH . I 5 HOH B 20 420 33 HOH HOH . I 5 HOH B 21 421 5 HOH HOH . I 5 HOH B 22 422 162 HOH HOH . I 5 HOH B 23 423 155 HOH HOH . I 5 HOH B 24 424 171 HOH HOH . I 5 HOH B 25 425 27 HOH HOH . I 5 HOH B 26 426 9 HOH HOH . I 5 HOH B 27 427 180 HOH HOH . I 5 HOH B 28 428 131 HOH HOH . I 5 HOH B 29 429 47 HOH HOH . I 5 HOH B 30 430 58 HOH HOH . I 5 HOH B 31 431 100 HOH HOH . I 5 HOH B 32 432 6 HOH HOH . I 5 HOH B 33 433 138 HOH HOH . I 5 HOH B 34 434 85 HOH HOH . I 5 HOH B 35 435 7 HOH HOH . I 5 HOH B 36 436 95 HOH HOH . I 5 HOH B 37 437 117 HOH HOH . I 5 HOH B 38 438 83 HOH HOH . I 5 HOH B 39 439 16 HOH HOH . I 5 HOH B 40 440 113 HOH HOH . I 5 HOH B 41 441 141 HOH HOH . I 5 HOH B 42 442 15 HOH HOH . I 5 HOH B 43 443 97 HOH HOH . I 5 HOH B 44 444 105 HOH HOH . I 5 HOH B 45 445 60 HOH HOH . I 5 HOH B 46 446 125 HOH HOH . I 5 HOH B 47 447 69 HOH HOH . I 5 HOH B 48 448 73 HOH HOH . I 5 HOH B 49 449 166 HOH HOH . I 5 HOH B 50 450 22 HOH HOH . I 5 HOH B 51 451 164 HOH HOH . I 5 HOH B 52 452 24 HOH HOH . I 5 HOH B 53 453 128 HOH HOH . I 5 HOH B 54 454 36 HOH HOH . I 5 HOH B 55 455 29 HOH HOH . I 5 HOH B 56 456 70 HOH HOH . I 5 HOH B 57 457 115 HOH HOH . I 5 HOH B 58 458 124 HOH HOH . I 5 HOH B 59 459 43 HOH HOH . I 5 HOH B 60 460 25 HOH HOH . I 5 HOH B 61 461 26 HOH HOH . I 5 HOH B 62 462 133 HOH HOH . I 5 HOH B 63 463 132 HOH HOH . I 5 HOH B 64 464 77 HOH HOH . I 5 HOH B 65 465 12 HOH HOH . I 5 HOH B 66 466 81 HOH HOH . I 5 HOH B 67 467 74 HOH HOH . I 5 HOH B 68 468 88 HOH HOH . I 5 HOH B 69 469 145 HOH HOH . I 5 HOH B 70 470 32 HOH HOH . I 5 HOH B 71 471 93 HOH HOH . I 5 HOH B 72 472 28 HOH HOH . I 5 HOH B 73 473 38 HOH HOH . I 5 HOH B 74 474 112 HOH HOH . I 5 HOH B 75 475 148 HOH HOH . I 5 HOH B 76 476 53 HOH HOH . I 5 HOH B 77 477 114 HOH HOH . I 5 HOH B 78 478 48 HOH HOH . I 5 HOH B 79 479 119 HOH HOH . I 5 HOH B 80 480 79 HOH HOH . I 5 HOH B 81 481 140 HOH HOH . I 5 HOH B 82 482 169 HOH HOH . I 5 HOH B 83 483 63 HOH HOH . I 5 HOH B 84 484 144 HOH HOH . I 5 HOH B 85 485 139 HOH HOH . I 5 HOH B 86 486 54 HOH HOH . I 5 HOH B 87 487 90 HOH HOH . I 5 HOH B 88 488 71 HOH HOH . I 5 HOH B 89 489 92 HOH HOH . I 5 HOH B 90 490 109 HOH HOH . I 5 HOH B 91 491 106 HOH HOH . I 5 HOH B 92 492 98 HOH HOH . I 5 HOH B 93 493 160 HOH HOH . I 5 HOH B 94 494 21 HOH HOH . I 5 HOH B 95 495 151 HOH HOH . I 5 HOH B 96 496 156 HOH HOH . I 5 HOH B 97 497 99 HOH HOH . I 5 HOH B 98 498 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DGL . . . C 2 5.826 -10.309 -17.955 1 38.27 ? N DGL 301 A 1 HETATM 2 C CA DGL . . . C 2 6.385 -9.158 -18.702 1 39.77 ? CA DGL 301 A 1 HETATM 3 C C DGL . . . C 2 7.262 -8.339 -17.753 1 37.31 ? C DGL 301 A 1 HETATM 4 O O DGL . . . C 2 7.523 -7.222 -18.105 1 35.84 ? O DGL 301 A 1 HETATM 5 C CB DGL . . . C 2 7.17 -9.643 -19.92 1 38.67 ? CB DGL 301 A 1 HETATM 6 C CG DGL . . . C 2 6.294 -10.208 -21.015 1 39.72 ? CG DGL 301 A 1 HETATM 7 C CD DGL . . . C 2 5.251 -9.233 -21.524 1 38.68 ? CD DGL 301 A 1 HETATM 8 O OE1 DGL . . . C 2 5.628 -8.277 -22.214 1 39.7 ? OE1 DGL 301 A 1 HETATM 9 O OE2 DGL . . . C 2 4.073 -9.425 -21.208 1 38.33 ? OE2 DGL 301 A 1 HETATM 10 O OXT DGL . . . C 2 7.617 -8.864 -16.7 1 36.49 ? OXT DGL 301 A 1 HETATM 11 H H2 DGL . . . C 2 5.704 -10.083 -17.08 1 45.93 ? H2 DGL 301 A 1 HETATM 12 H H DGL . . . C 2 5.025 -10.554 -18.314 1 45.93 ? H DGL 301 A 1 HETATM 13 H H3 DGL . . . C 2 6.399 -11.016 -18.002 1 45.93 ? H3 DGL 301 A 1 HETATM 14 H HA DGL . . . C 2 5.638 -8.593 -19.005 1 47.73 ? HA DGL 301 A 1 HETATM 15 H HB2 DGL . . . C 2 7.684 -8.892 -20.28 1 46.4 ? HB2 DGL 301 A 1 HETATM 16 H HB3 DGL . . . C 2 7.803 -10.332 -19.63 1 46.4 ? HB3 DGL 301 A 1 HETATM 17 H HG2 DGL . . . C 2 6.859 -10.485 -21.766 1 47.67 ? HG2 DGL 301 A 1 HETATM 18 H HG3 DGL . . . C 2 5.836 -11.006 -20.676 1 47.67 ? HG3 DGL 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #