data_8UDJ # _model_server_result.job_id PQNpzG9kAsARec7QqnT19Q _model_server_result.datetime_utc '2024-12-26 00:32:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8udj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8UDJ # _exptl.entry_id 8UDJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 580.505 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-4-(methylamino)-4-oxo-1-phenylbutan-2-yl]-D-phenylalaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.42 _cell.angle_gamma 90 _cell.entry_id 8UDJ _cell.length_a 97.626 _cell.length_b 81.922 _cell.length_c 54.594 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UDJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H31 Cl2 N5 O3' _chem_comp.formula_weight 580.505 _chem_comp.id WB5 _chem_comp.mon_nstd_flag . _chem_comp.name 2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-4-(methylamino)-4-oxo-1-phenylbutan-2-yl]-D-phenylalaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5 C30 WB5 trip 376 n n C30 C25 WB5 sing 377 n n C26 C25 WB5 doub 378 n y C26 C27 WB5 sing 379 n y C25 C24 WB5 sing 380 n y C27 C28 WB5 doub 381 n y C24 C23 WB5 sing 382 n n C24 C29 WB5 doub 383 n y C28 C29 WB5 sing 384 n y C23 C22 WB5 sing 385 n n C1 N1 WB5 sing 386 n n N1 C2 WB5 sing 387 n n C2 O3 WB5 doub 388 n n C2 C3 WB5 sing 389 n n C22 N4 WB5 sing 390 n n C22 C21 WB5 sing 391 n n C3 C4 WB5 sing 392 n n O1 C21 WB5 doub 393 n n C21 N3 WB5 sing 394 n n C4 N2 WB5 sing 395 n n C4 C5 WB5 sing 396 n n N3 C13 WB5 sing 397 n n N2 C12 WB5 sing 398 n n O2 C12 WB5 doub 399 n n C12 C13 WB5 sing 400 n n C5 C6 WB5 sing 401 n n C13 C14 WB5 sing 402 n n C6 C11 WB5 doub 403 n y C6 C7 WB5 sing 404 n y C14 C15 WB5 sing 405 n n C11 C10 WB5 sing 406 n y C20 C15 WB5 doub 407 n y C20 C19 WB5 sing 408 n y C15 C16 WB5 sing 409 n y C7 C8 WB5 doub 410 n y C19 C18 WB5 doub 411 n y C16 CL2 WB5 sing 412 n n C16 C17 WB5 doub 413 n y C18 C17 WB5 sing 414 n y C18 CL1 WB5 sing 415 n n C10 C9 WB5 doub 416 n y C8 C9 WB5 sing 417 n y C10 H1 WB5 sing 418 n n C11 H2 WB5 sing 419 n n C13 H3 WB5 sing 420 n n C17 H4 WB5 sing 421 n n C19 H5 WB5 sing 422 n n C22 H6 WB5 sing 423 n n C23 H7 WB5 sing 424 n n C23 H8 WB5 sing 425 n n C1 H9 WB5 sing 426 n n C1 H10 WB5 sing 427 n n C1 H11 WB5 sing 428 n n C3 H12 WB5 sing 429 n n C3 H13 WB5 sing 430 n n C4 H14 WB5 sing 431 n n C5 H15 WB5 sing 432 n n C5 H16 WB5 sing 433 n n C8 H17 WB5 sing 434 n n C14 H18 WB5 sing 435 n n C14 H19 WB5 sing 436 n n C20 H20 WB5 sing 437 n n C26 H21 WB5 sing 438 n n C27 H22 WB5 sing 439 n n C28 H23 WB5 sing 440 n n C29 H24 WB5 sing 441 n n C7 H25 WB5 sing 442 n n C9 H26 WB5 sing 443 n n N1 H27 WB5 sing 444 n n N2 H28 WB5 sing 445 n n N3 H29 WB5 sing 446 n n N4 H30 WB5 sing 447 n n N4 H31 WB5 sing 448 n n # _atom_sites.entry_id 8UDJ _atom_sites.fract_transf_matrix[1][1] 0.010243 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005315 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020636 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WB5 A 1 401 401 WB5 DL2 . C 3 HOH A 1 501 140 HOH HOH . C 3 HOH A 2 502 72 HOH HOH . C 3 HOH A 3 503 120 HOH HOH . C 3 HOH A 4 504 145 HOH HOH . C 3 HOH A 5 505 34 HOH HOH . C 3 HOH A 6 506 36 HOH HOH . C 3 HOH A 7 507 41 HOH HOH . C 3 HOH A 8 508 85 HOH HOH . C 3 HOH A 9 509 150 HOH HOH . C 3 HOH A 10 510 63 HOH HOH . C 3 HOH A 11 511 31 HOH HOH . C 3 HOH A 12 512 127 HOH HOH . C 3 HOH A 13 513 112 HOH HOH . C 3 HOH A 14 514 35 HOH HOH . C 3 HOH A 15 515 39 HOH HOH . C 3 HOH A 16 516 27 HOH HOH . C 3 HOH A 17 517 155 HOH HOH . C 3 HOH A 18 518 134 HOH HOH . C 3 HOH A 19 519 47 HOH HOH . C 3 HOH A 20 520 76 HOH HOH . C 3 HOH A 21 521 109 HOH HOH . C 3 HOH A 22 522 26 HOH HOH . C 3 HOH A 23 523 8 HOH HOH . C 3 HOH A 24 524 75 HOH HOH . C 3 HOH A 25 525 81 HOH HOH . C 3 HOH A 26 526 114 HOH HOH . C 3 HOH A 27 527 11 HOH HOH . C 3 HOH A 28 528 107 HOH HOH . C 3 HOH A 29 529 7 HOH HOH . C 3 HOH A 30 530 48 HOH HOH . C 3 HOH A 31 531 94 HOH HOH . C 3 HOH A 32 532 15 HOH HOH . C 3 HOH A 33 533 79 HOH HOH . C 3 HOH A 34 534 37 HOH HOH . C 3 HOH A 35 535 4 HOH HOH . C 3 HOH A 36 536 12 HOH HOH . C 3 HOH A 37 537 6 HOH HOH . C 3 HOH A 38 538 99 HOH HOH . C 3 HOH A 39 539 82 HOH HOH . C 3 HOH A 40 540 55 HOH HOH . C 3 HOH A 41 541 51 HOH HOH . C 3 HOH A 42 542 10 HOH HOH . C 3 HOH A 43 543 123 HOH HOH . C 3 HOH A 44 544 154 HOH HOH . C 3 HOH A 45 545 46 HOH HOH . C 3 HOH A 46 546 157 HOH HOH . C 3 HOH A 47 547 65 HOH HOH . C 3 HOH A 48 548 45 HOH HOH . C 3 HOH A 49 549 22 HOH HOH . C 3 HOH A 50 550 129 HOH HOH . C 3 HOH A 51 551 100 HOH HOH . C 3 HOH A 52 552 84 HOH HOH . C 3 HOH A 53 553 19 HOH HOH . C 3 HOH A 54 554 30 HOH HOH . C 3 HOH A 55 555 23 HOH HOH . C 3 HOH A 56 556 146 HOH HOH . C 3 HOH A 57 557 111 HOH HOH . C 3 HOH A 58 558 1 HOH HOH . C 3 HOH A 59 559 77 HOH HOH . C 3 HOH A 60 560 60 HOH HOH . C 3 HOH A 61 561 95 HOH HOH . C 3 HOH A 62 562 44 HOH HOH . C 3 HOH A 63 563 16 HOH HOH . C 3 HOH A 64 564 5 HOH HOH . C 3 HOH A 65 565 18 HOH HOH . C 3 HOH A 66 566 2 HOH HOH . C 3 HOH A 67 567 148 HOH HOH . C 3 HOH A 68 568 3 HOH HOH . C 3 HOH A 69 569 141 HOH HOH . C 3 HOH A 70 570 24 HOH HOH . C 3 HOH A 71 571 29 HOH HOH . C 3 HOH A 72 572 54 HOH HOH . C 3 HOH A 73 573 64 HOH HOH . C 3 HOH A 74 574 42 HOH HOH . C 3 HOH A 75 575 20 HOH HOH . C 3 HOH A 76 576 98 HOH HOH . C 3 HOH A 77 577 88 HOH HOH . C 3 HOH A 78 578 50 HOH HOH . C 3 HOH A 79 579 118 HOH HOH . C 3 HOH A 80 580 136 HOH HOH . C 3 HOH A 81 581 101 HOH HOH . C 3 HOH A 82 582 21 HOH HOH . C 3 HOH A 83 583 68 HOH HOH . C 3 HOH A 84 584 119 HOH HOH . C 3 HOH A 85 585 97 HOH HOH . C 3 HOH A 86 586 43 HOH HOH . C 3 HOH A 87 587 52 HOH HOH . C 3 HOH A 88 588 61 HOH HOH . C 3 HOH A 89 589 66 HOH HOH . C 3 HOH A 90 590 153 HOH HOH . C 3 HOH A 91 591 53 HOH HOH . C 3 HOH A 92 592 49 HOH HOH . C 3 HOH A 93 593 62 HOH HOH . C 3 HOH A 94 594 32 HOH HOH . C 3 HOH A 95 595 89 HOH HOH . C 3 HOH A 96 596 142 HOH HOH . C 3 HOH A 97 597 113 HOH HOH . C 3 HOH A 98 598 138 HOH HOH . C 3 HOH A 99 599 102 HOH HOH . C 3 HOH A 100 600 25 HOH HOH . C 3 HOH A 101 601 9 HOH HOH . C 3 HOH A 102 602 56 HOH HOH . C 3 HOH A 103 603 13 HOH HOH . C 3 HOH A 104 604 116 HOH HOH . C 3 HOH A 105 605 143 HOH HOH . C 3 HOH A 106 606 117 HOH HOH . C 3 HOH A 107 607 152 HOH HOH . C 3 HOH A 108 608 139 HOH HOH . C 3 HOH A 109 609 58 HOH HOH . C 3 HOH A 110 610 38 HOH HOH . C 3 HOH A 111 611 14 HOH HOH . C 3 HOH A 112 612 90 HOH HOH . C 3 HOH A 113 613 156 HOH HOH . C 3 HOH A 114 614 57 HOH HOH . C 3 HOH A 115 615 108 HOH HOH . C 3 HOH A 116 616 110 HOH HOH . C 3 HOH A 117 617 133 HOH HOH . C 3 HOH A 118 618 69 HOH HOH . C 3 HOH A 119 619 40 HOH HOH . C 3 HOH A 120 620 17 HOH HOH . C 3 HOH A 121 621 137 HOH HOH . C 3 HOH A 122 622 135 HOH HOH . C 3 HOH A 123 623 33 HOH HOH . C 3 HOH A 124 624 132 HOH HOH . C 3 HOH A 125 625 92 HOH HOH . C 3 HOH A 126 626 121 HOH HOH . C 3 HOH A 127 627 28 HOH HOH . C 3 HOH A 128 628 93 HOH HOH . C 3 HOH A 129 629 78 HOH HOH . C 3 HOH A 130 630 131 HOH HOH . C 3 HOH A 131 631 106 HOH HOH . C 3 HOH A 132 632 105 HOH HOH . C 3 HOH A 133 633 86 HOH HOH . C 3 HOH A 134 634 96 HOH HOH . C 3 HOH A 135 635 83 HOH HOH . C 3 HOH A 136 636 70 HOH HOH . C 3 HOH A 137 637 125 HOH HOH . C 3 HOH A 138 638 73 HOH HOH . C 3 HOH A 139 639 158 HOH HOH . C 3 HOH A 140 640 144 HOH HOH . C 3 HOH A 141 641 67 HOH HOH . C 3 HOH A 142 642 122 HOH HOH . C 3 HOH A 143 643 103 HOH HOH . C 3 HOH A 144 644 115 HOH HOH . C 3 HOH A 145 645 128 HOH HOH . C 3 HOH A 146 646 91 HOH HOH . C 3 HOH A 147 647 147 HOH HOH . C 3 HOH A 148 648 59 HOH HOH . C 3 HOH A 149 649 104 HOH HOH . C 3 HOH A 150 650 87 HOH HOH . C 3 HOH A 151 651 151 HOH HOH . C 3 HOH A 152 652 149 HOH HOH . C 3 HOH A 153 653 80 HOH HOH . C 3 HOH A 154 654 124 HOH HOH . C 3 HOH A 155 655 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 WB5 . . . B 2 10.101 -7.419 26.102 1 73.18 ? C10 WB5 401 A 1 HETATM 2 C C11 WB5 . . . B 2 10.051 -7.321 24.714 1 74.6 ? C11 WB5 401 A 1 HETATM 3 C C13 WB5 . . . B 2 8.807 -1.568 22.865 1 71.27 ? C13 WB5 401 A 1 HETATM 4 C C15 WB5 . . . B 2 7.838 -0.452 24.812 1 86.03 ? C15 WB5 401 A 1 HETATM 5 C C17 WB5 . . . B 2 5.617 -0.289 25.772 1 97.93 ? C17 WB5 401 A 1 HETATM 6 C C19 WB5 . . . B 2 6.902 1.744 25.138 1 90.89 ? C19 WB5 401 A 1 HETATM 7 C C21 WB5 . . . B 2 8.363 0.053 21.098 1 61.74 ? C21 WB5 401 A 1 HETATM 8 C C22 WB5 . . . B 2 8.694 1.293 20.308 1 64.22 ? C22 WB5 401 A 1 HETATM 9 C C23 WB5 . . . B 2 8.896 0.924 18.859 1 60.19 ? C23 WB5 401 A 1 HETATM 10 C C25 WB5 . . . B 2 9.25 -1.357 17.892 1 52.95 ? C25 WB5 401 A 1 HETATM 11 C C1 WB5 . . . B 2 11.62 -8.396 19.241 1 76.45 ? C1 WB5 401 A 1 HETATM 12 C C2 WB5 . . . B 2 11.031 -6.221 20.167 1 77.19 ? C2 WB5 401 A 1 HETATM 13 C C3 WB5 . . . B 2 9.996 -5.213 20.562 1 69.18 ? C3 WB5 401 A 1 HETATM 14 C C4 WB5 . . . B 2 9.861 -5.144 22.054 1 68.54 ? C4 WB5 401 A 1 HETATM 15 C C5 WB5 . . . B 2 9.148 -6.37 22.568 1 67.56 ? C5 WB5 401 A 1 HETATM 16 C C6 WB5 . . . B 2 9.175 -6.444 24.073 1 72.55 ? C6 WB5 401 A 1 HETATM 17 C C8 WB5 . . . B 2 8.326 -5.692 26.215 1 71.29 ? C8 WB5 401 A 1 HETATM 18 C C14 WB5 . . . B 2 8.976 -1.304 24.337 1 77.36 ? C14 WB5 401 A 1 HETATM 19 C C12 WB5 . . . B 2 9.669 -2.748 22.516 1 70.75 ? C12 WB5 401 A 1 HETATM 20 C C16 WB5 . . . B 2 6.691 -1.055 25.331 1 98.19 ? C16 WB5 401 A 1 HETATM 21 C C18 WB5 . . . B 2 5.674 1.095 25.695 1 104.23 ? C18 WB5 401 A 1 HETATM 22 C C20 WB5 . . . B 2 7.945 0.933 24.715 1 84.98 ? C20 WB5 401 A 1 HETATM 23 C C24 WB5 . . . B 2 9.762 -0.293 18.626 1 52.2 ? C24 WB5 401 A 1 HETATM 24 C C26 WB5 . . . B 2 10.022 -2.491 17.645 1 57.27 ? C26 WB5 401 A 1 HETATM 25 C C27 WB5 . . . B 2 11.325 -2.565 18.132 1 50.29 ? C27 WB5 401 A 1 HETATM 26 C C28 WB5 . . . B 2 11.844 -1.498 18.859 1 54.42 ? C28 WB5 401 A 1 HETATM 27 C C29 WB5 . . . B 2 11.068 -0.367 19.107 1 54.24 ? C29 WB5 401 A 1 HETATM 28 C C30 WB5 . . . B 2 7.847 -1.261 17.378 1 47.26 ? C30 WB5 401 A 1 HETATM 29 C C7 WB5 . . . B 2 8.316 -5.642 24.825 1 72.27 ? C7 WB5 401 A 1 HETATM 30 C C9 WB5 . . . B 2 9.269 -6.634 26.893 1 73.11 ? C9 WB5 401 A 1 HETATM 31 CL CL1 WB5 . . . B 2 4.342 2.055 26.243 1 129.68 ? CL1 WB5 401 A 1 HETATM 32 CL CL2 WB5 . . . B 2 6.588 -2.779 25.434 1 115.66 ? CL2 WB5 401 A 1 HETATM 33 N N1 WB5 . . . B 2 10.644 -7.386 19.642 1 78.92 ? N1 WB5 401 A 1 HETATM 34 N N2 WB5 . . . B 2 9.091 -3.943 22.375 1 66.31 ? N2 WB5 401 A 1 HETATM 35 N N3 WB5 . . . B 2 9.143 -0.36 22.099 1 64.38 ? N3 WB5 401 A 1 HETATM 36 N N4 WB5 . . . B 2 7.611 2.294 20.397 1 71.58 ? N4 WB5 401 A 1 HETATM 37 N N5 WB5 . . . B 2 6.762 -1.177 16.99 1 43.52 ? N5 WB5 401 A 1 HETATM 38 O O1 WB5 . . . B 2 7.37 -0.607 20.804 1 59.53 ? O1 WB5 401 A 1 HETATM 39 O O2 WB5 . . . B 2 10.887 -2.617 22.391 1 72.25 ? O2 WB5 401 A 1 HETATM 40 O O3 WB5 . . . B 2 12.225 -5.955 20.327 1 78.38 ? O3 WB5 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 40 #