data_8UDQ # _model_server_result.job_id l9arxwihJYL1vEPRxCLjwg _model_server_result.datetime_utc '2025-01-18 07:52:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8udq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8UDQ # _exptl.entry_id 8UDQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 655.59 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-4-{[2-(dimethylamino)ethyl]amino}-1-(4-fluorophenyl)-4-oxobutan-2-yl]-D-phenylalaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.55 _cell.angle_gamma 90 _cell.entry_id 8UDQ _cell.length_a 97.274 _cell.length_b 80.979 _cell.length_c 51.97 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UDQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -43.185737 0 94.543724 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 5 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 5 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 2_557 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 3.196 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C33 H37 Cl2 F N6 O3' _chem_comp.formula_weight 655.59 _chem_comp.id WC0 _chem_comp.mon_nstd_flag . _chem_comp.name 2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-4-{[2-(dimethylamino)ethyl]amino}-1-(4-fluorophenyl)-4-oxobutan-2-yl]-D-phenylalaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 N4 WC0 sing 376 n n N4 C23 WC0 sing 377 n n N4 C22 WC0 sing 378 n n C22 C21 WC0 sing 379 n n N6 C29 WC0 trip 380 n n C30 C31 WC0 doub 381 n y C30 C28 WC0 sing 382 n y C29 C28 WC0 sing 383 n n C31 C32 WC0 sing 384 n y C28 C27 WC0 doub 385 n y C21 N3 WC0 sing 386 n n C32 C33 WC0 doub 387 n y C27 C33 WC0 sing 388 n y C27 C26 WC0 sing 389 n n N3 C20 WC0 sing 390 n n C26 C25 WC0 sing 391 n n C20 O2 WC0 doub 392 n n C20 C19 WC0 sing 393 n n C19 C11 WC0 sing 394 n n C25 N5 WC0 sing 395 n n C25 C1 WC0 sing 396 n n O1 C1 WC0 doub 397 n n C1 N1 WC0 sing 398 n n C11 N2 WC0 sing 399 n n C11 C12 WC0 sing 400 n n N2 C10 WC0 sing 401 n n O3 C10 WC0 doub 402 n n N1 C2 WC0 sing 403 n n C10 C2 WC0 sing 404 n n C12 C13 WC0 sing 405 n n C2 C3 WC0 sing 406 n n C13 C18 WC0 doub 407 n y C13 C14 WC0 sing 408 n y C3 C4 WC0 sing 409 n n C18 C17 WC0 sing 410 n y C14 C15 WC0 doub 411 n y C9 C4 WC0 doub 412 n y C9 C8 WC0 sing 413 n y C4 C5 WC0 sing 414 n y C8 C7 WC0 doub 415 n y C5 CL1 WC0 sing 416 n n C5 C6 WC0 doub 417 n y C7 C6 WC0 sing 418 n y C7 CL2 WC0 sing 419 n n C17 C16 WC0 doub 420 n y C15 C16 WC0 sing 421 n y C16 F1 WC0 sing 422 n n C2 H1 WC0 sing 423 n n C3 H2 WC0 sing 424 n n C3 H3 WC0 sing 425 n n C6 H4 WC0 sing 426 n n C11 H5 WC0 sing 427 n n C12 H6 WC0 sing 428 n n C12 H7 WC0 sing 429 n n C14 H8 WC0 sing 430 n n C15 H9 WC0 sing 431 n n C17 H10 WC0 sing 432 n n C18 H11 WC0 sing 433 n n C19 H12 WC0 sing 434 n n C19 H13 WC0 sing 435 n n C21 H14 WC0 sing 436 n n C21 H15 WC0 sing 437 n n C22 H16 WC0 sing 438 n n C22 H17 WC0 sing 439 n n C23 H18 WC0 sing 440 n n C23 H19 WC0 sing 441 n n C23 H20 WC0 sing 442 n n C24 H21 WC0 sing 443 n n C24 H22 WC0 sing 444 n n C24 H23 WC0 sing 445 n n C25 H24 WC0 sing 446 n n C26 H25 WC0 sing 447 n n C26 H26 WC0 sing 448 n n C30 H27 WC0 sing 449 n n C31 H28 WC0 sing 450 n n C32 H29 WC0 sing 451 n n C33 H30 WC0 sing 452 n n C8 H31 WC0 sing 453 n n C9 H32 WC0 sing 454 n n N1 H33 WC0 sing 455 n n N2 H34 WC0 sing 456 n n N3 H35 WC0 sing 457 n n N5 H37 WC0 sing 458 n n N5 H38 WC0 sing 459 n n # _atom_sites.entry_id 8UDQ _atom_sites.fract_transf_matrix[1][1] 0.01028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004695 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WC0 A 1 401 401 WC0 D75 . C 3 NA A 1 402 402 NA NA . D 4 HOH A 1 501 17 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 5 HOH HOH . D 4 HOH A 4 504 3 HOH HOH . D 4 HOH A 5 505 15 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 1 HOH HOH . D 4 HOH A 8 508 7 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 12 HOH HOH . D 4 HOH A 11 511 13 HOH HOH . D 4 HOH A 12 512 8 HOH HOH . D 4 HOH A 13 513 16 HOH HOH . D 4 HOH A 14 514 14 HOH HOH . D 4 HOH A 15 515 10 HOH HOH . D 4 HOH A 16 516 4 HOH HOH . D 4 HOH A 17 517 11 HOH HOH . D 4 HOH A 18 518 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 WC0 . . . B 2 -11.265 13.076 68.109 1 68.97 ? C1 WC0 401 A 1 HETATM 2 C C2 WC0 . . . B 2 -10.732 11.179 69.537 1 79.23 ? C2 WC0 401 A 1 HETATM 3 O O2 WC0 . . . B 2 -8.076 6.429 66.421 1 90.23 ? O2 WC0 401 A 1 HETATM 4 C C3 WC0 . . . B 2 -10.472 11.34 71.037 1 92.98 ? C3 WC0 401 A 1 HETATM 5 O O3 WC0 . . . B 2 -8.753 10.015 68.878 1 77.83 ? O3 WC0 401 A 1 HETATM 6 C C4 WC0 . . . B 2 -11.496 12.431 71.559 1 110.2 ? C4 WC0 401 A 1 HETATM 7 C C5 WC0 . . . B 2 -12.741 12.035 72.046 1 118.52 ? C5 WC0 401 A 1 HETATM 8 C C6 WC0 . . . B 2 -13.635 13 72.489 1 124 ? C6 WC0 401 A 1 HETATM 9 C C11 WC0 . . . B 2 -9.954 7.568 68.349 1 73 ? C11 WC0 401 A 1 HETATM 10 C C12 WC0 . . . B 2 -10.569 6.387 69.089 1 86.81 ? C12 WC0 401 A 1 HETATM 11 C C13 WC0 . . . B 2 -10.502 6.577 70.649 1 97.68 ? C13 WC0 401 A 1 HETATM 12 C C14 WC0 . . . B 2 -9.475 5.988 71.382 1 100.25 ? C14 WC0 401 A 1 HETATM 13 C C15 WC0 . . . B 2 -9.418 6.156 72.764 1 102.96 ? C15 WC0 401 A 1 HETATM 14 C C16 WC0 . . . B 2 -10.389 6.911 73.418 1 105.33 ? C16 WC0 401 A 1 HETATM 15 C C17 WC0 . . . B 2 -11.417 7.498 72.689 1 101.58 ? C17 WC0 401 A 1 HETATM 16 C C18 WC0 . . . B 2 -11.473 7.326 71.311 1 98.95 ? C18 WC0 401 A 1 HETATM 17 C C19 WC0 . . . B 2 -10.2 7.408 66.851 1 82.83 ? C19 WC0 401 A 1 HETATM 18 C C21 WC0 . . . B 2 -8.834 4.261 65.091 1 104.67 ? C21 WC0 401 A 1 HETATM 19 C C22 WC0 . . . B 2 -9.431 3.559 63.853 1 111.83 ? C22 WC0 401 A 1 HETATM 20 C C23 WC0 . . . B 2 -7.073 3.647 63.197 1 118.03 ? C23 WC0 401 A 1 HETATM 21 C C24 WC0 . . . B 2 -8.534 2.027 62.238 1 116.23 ? C24 WC0 401 A 1 HETATM 22 C C25 WC0 . . . B 2 -10.859 14.427 67.472 1 69.69 ? C25 WC0 401 A 1 HETATM 23 C C26 WC0 . . . B 2 -10.925 14.373 65.938 1 71.46 ? C26 WC0 401 A 1 HETATM 24 C C10 WC0 . . . B 2 -9.924 9.943 69.034 1 80.47 ? C10 WC0 401 A 1 HETATM 25 C C20 WC0 . . . B 2 -9.25 6.318 66.277 1 89.96 ? C20 WC0 401 A 1 HETATM 26 C C27 WC0 . . . B 2 -10.087 13.149 65.439 1 73.62 ? C27 WC0 401 A 1 HETATM 27 C C28 WC0 . . . B 2 -10.686 12.258 64.566 1 64.45 ? C28 WC0 401 A 1 HETATM 28 C C29 WC0 . . . B 2 -12.125 12.531 64.158 1 61.53 ? C29 WC0 401 A 1 HETATM 29 C C30 WC0 . . . B 2 -9.993 11.148 64.094 1 68.6 ? C30 WC0 401 A 1 HETATM 30 C C31 WC0 . . . B 2 -8.681 10.939 64.508 1 71.68 ? C31 WC0 401 A 1 HETATM 31 C C32 WC0 . . . B 2 -8.076 11.838 65.385 1 76.27 ? C32 WC0 401 A 1 HETATM 32 C C33 WC0 . . . B 2 -8.775 12.946 65.861 1 75.08 ? C33 WC0 401 A 1 HETATM 33 C C7 WC0 . . . B 2 -13.295 14.345 72.439 1 131.22 ? C7 WC0 401 A 1 HETATM 34 C C8 WC0 . . . B 2 -12.055 14.741 71.945 1 125.17 ? C8 WC0 401 A 1 HETATM 35 C C9 WC0 . . . B 2 -11.153 13.781 71.508 1 117.87 ? C9 WC0 401 A 1 HETATM 36 CL CL1 WC0 . . . B 2 -13.199 10.361 72.113 1 115.36 ? CL1 WC0 401 A 1 HETATM 37 CL CL2 WC0 . . . B 2 -14.436 15.52 72.998 1 142.06 ? CL2 WC0 401 A 1 HETATM 38 F F1 WC0 . . . B 2 -10.34 7.079 74.757 1 104.71 ? F1 WC0 401 A 1 HETATM 39 N N1 WC0 . . . B 2 -10.393 12.425 68.883 1 70.59 ? N1 WC0 401 A 1 HETATM 40 N N2 WC0 . . . B 2 -10.599 8.814 68.812 1 69.33 ? N2 WC0 401 A 1 HETATM 41 N N3 WC0 . . . B 2 -9.749 5.269 65.621 1 91.47 ? N3 WC0 401 A 1 HETATM 42 N N4 WC0 . . . B 2 -8.448 3.388 62.767 1 117.28 ? N4 WC0 401 A 1 HETATM 43 N N5 WC0 . . . B 2 -11.743 15.46 67.936 1 70.15 ? N5 WC0 401 A 1 HETATM 44 N N6 WC0 . . . B 2 -13.175 12.74 63.863 1 59.69 ? N6 WC0 401 A 1 HETATM 45 O O1 WC0 . . . B 2 -12.344 12.619 67.9 1 69.02 ? O1 WC0 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 45 #