data_8UDR # _model_server_result.job_id fIoneb4WhkTTXIN0a1zKYQ _model_server_result.datetime_utc '2024-11-22 00:28:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8udr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 8UDR # _exptl.entry_id 8UDR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 562.61 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMG 510 (bound form)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UDR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 25 B CYS 45 1_555 B SG CYS 80 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf4 D SG CYS 21 D CYS 41 1_555 D SG CYS 98 D CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 D SG CYS 150 D CYS 170 1_555 D SG CYS 206 D CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 E SG CYS 20 E CYS 42 1_555 E SG CYS 88 E CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 E SG CYS 137 E CYS 162 1_555 E SG CYS 196 E CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 C SG CYS 6 C CYS 12 1_555 F C25 MOV . D MOV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? # _chem_comp.formula 'C30 H32 F2 N6 O3' _chem_comp.formula_weight 562.61 _chem_comp.id MOV _chem_comp.mon_nstd_flag . _chem_comp.name 'AMG 510 (bound form)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 6-fluoro-7-(2-fluoro-6-hydroxyphenyl)-4-[(2S)-2-methyl-4-propanoylpiperazin-1-yl]-1-[4-methyl-2-(propan-2-yl)pyridin-3-yl]pyrido[2,3-d]pyrimidin-2(1H)-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C13 MOV sing 235 n n O3 C26 MOV sing 236 n n C27 C26 MOV doub 237 n y C27 C28 MOV sing 238 n y C26 C6 MOV sing 239 n y C13 C12 MOV doub 240 n y C13 C9 MOV sing 241 n y C12 C11 MOV sing 242 n y C19 C20 MOV sing 243 n n C19 N6 MOV sing 244 n n C28 C29 MOV doub 245 n y C6 C3 MOV sing 246 n n C6 C30 MOV doub 247 n y F1 C4 MOV sing 248 n n C3 C4 MOV doub 249 n y C3 N1 MOV sing 250 n y C4 C5 MOV sing 251 n y N1 C2 MOV doub 252 n y C5 C1 MOV doub 253 n y C2 C1 MOV sing 254 n y C2 N4 MOV sing 255 n n C20 N2 MOV sing 256 n n C20 C21 MOV sing 257 n n C1 C7 MOV sing 258 n n C9 N4 MOV sing 259 n n C9 C10 MOV doub 260 n y C11 N5 MOV doub 261 n y N4 C8 MOV sing 262 n n C7 N3 MOV doub 263 n n C7 N2 MOV sing 264 n n C8 N3 MOV sing 265 n n C8 O1 MOV doub 266 n n N2 C17 MOV sing 267 n n C24 C23 MOV sing 268 n n C24 C25 MOV sing 269 n n C17 C18 MOV sing 270 n n N6 C23 MOV sing 271 n n N6 C18 MOV sing 272 n n C29 C30 MOV sing 273 n y C30 F2 MOV sing 274 n n C23 O2 MOV doub 275 n n N5 C10 MOV sing 276 n y C10 C14 MOV sing 277 n n C14 C16 MOV sing 278 n n C14 C15 MOV sing 279 n n C21 H1 MOV sing 280 n n C21 H2 MOV sing 281 n n C21 H3 MOV sing 282 n n C20 H4 MOV sing 283 n n C19 H5 MOV sing 284 n n C19 H6 MOV sing 285 n n C24 H7 MOV sing 286 n n C24 H8 MOV sing 287 n n C25 H9 MOV sing 288 n n C25 H10 MOV sing 289 n n C25 H11 MOV sing 290 n n C18 H12 MOV sing 291 n n C18 H13 MOV sing 292 n n C17 H14 MOV sing 293 n n C17 H15 MOV sing 294 n n C22 H16 MOV sing 295 n n C22 H17 MOV sing 296 n n C22 H18 MOV sing 297 n n C12 H19 MOV sing 298 n n C11 H20 MOV sing 299 n n C14 H21 MOV sing 300 n n C16 H22 MOV sing 301 n n C16 H23 MOV sing 302 n n C16 H24 MOV sing 303 n n C15 H25 MOV sing 304 n n C15 H26 MOV sing 305 n n C15 H27 MOV sing 306 n n C5 H28 MOV sing 307 n n C29 H29 MOV sing 308 n n C28 H30 MOV sing 309 n n C27 H31 MOV sing 310 n n O3 H32 MOV sing 311 n n # _atom_sites.entry_id 8UDR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id MOV _pdbx_nonpoly_scheme.pdb_strand_id D _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 17 _pdbx_nonpoly_scheme.pdb_mon_id MOV _pdbx_nonpoly_scheme.auth_mon_id MOV _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 MOV . . . F 6 146.156 158.259 136.536 1 20.05 ? C21 MOV 301 D 1 HETATM 2 C C20 MOV . . . F 6 146.29 158.758 137.978 1 20.05 ? C20 MOV 301 D 1 HETATM 3 C C19 MOV . . . F 6 146.223 160.28 137.912 1 20.05 ? C19 MOV 301 D 1 HETATM 4 N N6 MOV . . . F 6 144.887 160.792 137.764 1 20.05 ? N6 MOV 301 D 1 HETATM 5 C C23 MOV . . . F 6 144.447 161.734 136.761 1 20.05 ? C23 MOV 301 D 1 HETATM 6 O O2 MOV . . . F 6 143.318 162.069 136.74 1 20.05 ? O2 MOV 301 D 1 HETATM 7 C C24 MOV . . . F 6 145.425 162.28 135.736 1 20.05 ? C24 MOV 301 D 1 HETATM 8 C C25 MOV . . . F 6 144.682 163.216 134.791 1 20.05 ? C25 MOV 301 D 1 HETATM 9 C C18 MOV . . . F 6 144.029 160.209 138.757 1 20.05 ? C18 MOV 301 D 1 HETATM 10 C C17 MOV . . . F 6 143.962 158.712 138.482 1 20.05 ? C17 MOV 301 D 1 HETATM 11 N N2 MOV . . . F 6 145.237 158.058 138.687 1 20.05 ? N2 MOV 301 D 1 HETATM 12 C C7 MOV . . . F 6 145.517 156.842 139.444 1 20.05 ? C7 MOV 301 D 1 HETATM 13 N N3 MOV . . . F 6 146.881 156.458 139.445 1 20.05 ? N3 MOV 301 D 1 HETATM 14 C C8 MOV . . . F 6 147.323 155.296 140.158 1 20.05 ? C8 MOV 301 D 1 HETATM 15 O O1 MOV . . . F 6 148.462 154.999 140.144 1 20.05 ? O1 MOV 301 D 1 HETATM 16 N N4 MOV . . . F 6 146.356 154.49 140.889 1 20.05 ? N4 MOV 301 D 1 HETATM 17 C C9 MOV . . . F 6 146.791 153.311 141.622 1 20.05 ? C9 MOV 301 D 1 HETATM 18 C C13 MOV . . . F 6 147.101 153.427 142.941 1 20.05 ? C13 MOV 301 D 1 HETATM 19 C C22 MOV . . . F 6 146.986 154.772 143.645 1 20.05 ? C22 MOV 301 D 1 HETATM 20 C C12 MOV . . . F 6 147.509 152.351 143.643 1 20.05 ? C12 MOV 301 D 1 HETATM 21 C C11 MOV . . . F 6 147.606 151.134 143.008 1 20.05 ? C11 MOV 301 D 1 HETATM 22 N N5 MOV . . . F 6 147.295 151.016 141.7 1 20.05 ? N5 MOV 301 D 1 HETATM 23 C C10 MOV . . . F 6 146.893 152.086 140.988 1 20.05 ? C10 MOV 301 D 1 HETATM 24 C C14 MOV . . . F 6 146.529 151.951 139.513 1 20.05 ? C14 MOV 301 D 1 HETATM 25 C C16 MOV . . . F 6 147.574 151.135 138.774 1 20.05 ? C16 MOV 301 D 1 HETATM 26 C C15 MOV . . . F 6 145.208 151.205 139.442 1 20.05 ? C15 MOV 301 D 1 HETATM 27 C C2 MOV . . . F 6 144.934 154.876 140.894 1 20.05 ? C2 MOV 301 D 1 HETATM 28 N N1 MOV . . . F 6 144.072 154.093 141.587 1 20.05 ? N1 MOV 301 D 1 HETATM 29 C C1 MOV . . . F 6 144.503 155.988 140.219 1 20.05 ? C1 MOV 301 D 1 HETATM 30 C C5 MOV . . . F 6 143.171 156.281 140.268 1 20.05 ? C5 MOV 301 D 1 HETATM 31 C C4 MOV . . . F 6 142.307 155.511 140.952 1 20.05 ? C4 MOV 301 D 1 HETATM 32 F F1 MOV . . . F 6 140.974 155.773 141.023 1 20.05 ? F1 MOV 301 D 1 HETATM 33 C C3 MOV . . . F 6 142.767 154.392 141.617 1 20.05 ? C3 MOV 301 D 1 HETATM 34 C C6 MOV . . . F 6 141.897 153.459 142.434 1 20.05 ? C6 MOV 301 D 1 HETATM 35 C C30 MOV . . . F 6 140.882 152.737 141.849 1 20.05 ? C30 MOV 301 D 1 HETATM 36 F F2 MOV . . . F 6 140.647 152.822 140.511 1 20.05 ? F2 MOV 301 D 1 HETATM 37 C C29 MOV . . . F 6 140.102 151.915 142.63 1 20.05 ? C29 MOV 301 D 1 HETATM 38 C C28 MOV . . . F 6 140.329 151.82 143.984 1 20.05 ? C28 MOV 301 D 1 HETATM 39 C C27 MOV . . . F 6 141.338 152.548 144.564 1 20.05 ? C27 MOV 301 D 1 HETATM 40 C C26 MOV . . . F 6 142.118 153.363 143.785 1 20.05 ? C26 MOV 301 D 1 HETATM 41 O O3 MOV . . . F 6 143.145 154.109 144.361 1 20.05 ? O3 MOV 301 D 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #