data_8UDW # _model_server_result.job_id iIdD9Dd39aQenq8DQFnk1Q _model_server_result.datetime_utc '2025-01-18 07:52:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8udw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8UDW # _exptl.entry_id 8UDW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 669.616 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-4-{[3-(dimethylamino)propyl]amino}-1-(4-fluorophenyl)-4-oxobutan-2-yl]-D-phenylalaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.89 _cell.angle_gamma 90 _cell.entry_id 8UDW _cell.length_a 96.634 _cell.length_b 82.381 _cell.length_c 51.948 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -43.727489 0 94.245878 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H39 Cl2 F N6 O3' _chem_comp.formula_weight 669.616 _chem_comp.id WDK _chem_comp.mon_nstd_flag . _chem_comp.name 2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-4-{[3-(dimethylamino)propyl]amino}-1-(4-fluorophenyl)-4-oxobutan-2-yl]-D-phenylalaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 N4 WDK sing 376 n n C25 N4 WDK sing 377 n n N4 C23 WDK sing 378 n n N6 C30 WDK trip 379 n n C23 C22 WDK sing 380 n n C31 C32 WDK doub 381 n y C31 C29 WDK sing 382 n y C30 C29 WDK sing 383 n n C32 C33 WDK sing 384 n y C29 C28 WDK doub 385 n y C22 C21 WDK sing 386 n n C21 N3 WDK sing 387 n n C33 C34 WDK doub 388 n y C28 C34 WDK sing 389 n y C28 C27 WDK sing 390 n n N3 C20 WDK sing 391 n n C27 C26 WDK sing 392 n n C20 O2 WDK doub 393 n n C20 C19 WDK sing 394 n n C19 C11 WDK sing 395 n n C26 N5 WDK sing 396 n n C26 C1 WDK sing 397 n n O1 C1 WDK doub 398 n n C1 N1 WDK sing 399 n n C11 N2 WDK sing 400 n n C11 C12 WDK sing 401 n n N1 C2 WDK sing 402 n n N2 C10 WDK sing 403 n n O3 C10 WDK doub 404 n n C12 C13 WDK sing 405 n n C10 C2 WDK sing 406 n n C2 C3 WDK sing 407 n n C13 C18 WDK doub 408 n y C13 C14 WDK sing 409 n y C3 C4 WDK sing 410 n n C18 C17 WDK sing 411 n y C14 C15 WDK doub 412 n y C9 C4 WDK doub 413 n y C9 C8 WDK sing 414 n y C4 C5 WDK sing 415 n y C8 C7 WDK doub 416 n y C5 CL1 WDK sing 417 n n C5 C6 WDK doub 418 n y C17 C16 WDK doub 419 n y C15 C16 WDK sing 420 n y C7 C6 WDK sing 421 n y C7 CL2 WDK sing 422 n n C16 F1 WDK sing 423 n n C11 H1 WDK sing 424 n n C12 H2 WDK sing 425 n n C12 H3 WDK sing 426 n n C14 H4 WDK sing 427 n n C15 H5 WDK sing 428 n n C17 H6 WDK sing 429 n n C18 H7 WDK sing 430 n n C19 H8 WDK sing 431 n n C19 H9 WDK sing 432 n n C2 H10 WDK sing 433 n n C21 H11 WDK sing 434 n n C21 H12 WDK sing 435 n n C22 H13 WDK sing 436 n n C22 H14 WDK sing 437 n n C23 H15 WDK sing 438 n n C23 H16 WDK sing 439 n n C24 H17 WDK sing 440 n n C24 H18 WDK sing 441 n n C24 H19 WDK sing 442 n n C25 H20 WDK sing 443 n n C25 H21 WDK sing 444 n n C25 H22 WDK sing 445 n n C26 H23 WDK sing 446 n n C27 H24 WDK sing 447 n n C27 H25 WDK sing 448 n n C3 H26 WDK sing 449 n n C3 H27 WDK sing 450 n n C31 H28 WDK sing 451 n n C32 H29 WDK sing 452 n n C33 H30 WDK sing 453 n n C34 H31 WDK sing 454 n n C6 H32 WDK sing 455 n n C8 H33 WDK sing 456 n n C9 H34 WDK sing 457 n n N1 H35 WDK sing 458 n n N2 H36 WDK sing 459 n n N3 H37 WDK sing 460 n n N5 H39 WDK sing 461 n n N5 H40 WDK sing 462 n n # _atom_sites.entry_id 8UDW _atom_sites.fract_transf_matrix[1][1] 0.010348 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004801 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WDK A 1 401 401 WDK 75b . C 3 HOH A 1 501 11 HOH HOH . C 3 HOH A 2 502 50 HOH HOH . C 3 HOH A 3 503 45 HOH HOH . C 3 HOH A 4 504 34 HOH HOH . C 3 HOH A 5 505 17 HOH HOH . C 3 HOH A 6 506 12 HOH HOH . C 3 HOH A 7 507 63 HOH HOH . C 3 HOH A 8 508 38 HOH HOH . C 3 HOH A 9 509 69 HOH HOH . C 3 HOH A 10 510 88 HOH HOH . C 3 HOH A 11 511 54 HOH HOH . C 3 HOH A 12 512 43 HOH HOH . C 3 HOH A 13 513 28 HOH HOH . C 3 HOH A 14 514 51 HOH HOH . C 3 HOH A 15 515 66 HOH HOH . C 3 HOH A 16 516 24 HOH HOH . C 3 HOH A 17 517 53 HOH HOH . C 3 HOH A 18 518 3 HOH HOH . C 3 HOH A 19 519 20 HOH HOH . C 3 HOH A 20 520 41 HOH HOH . C 3 HOH A 21 521 52 HOH HOH . C 3 HOH A 22 522 46 HOH HOH . C 3 HOH A 23 523 1 HOH HOH . C 3 HOH A 24 524 27 HOH HOH . C 3 HOH A 25 525 5 HOH HOH . C 3 HOH A 26 526 8 HOH HOH . C 3 HOH A 27 527 19 HOH HOH . C 3 HOH A 28 528 55 HOH HOH . C 3 HOH A 29 529 2 HOH HOH . C 3 HOH A 30 530 21 HOH HOH . C 3 HOH A 31 531 13 HOH HOH . C 3 HOH A 32 532 40 HOH HOH . C 3 HOH A 33 533 4 HOH HOH . C 3 HOH A 34 534 29 HOH HOH . C 3 HOH A 35 535 31 HOH HOH . C 3 HOH A 36 536 60 HOH HOH . C 3 HOH A 37 537 26 HOH HOH . C 3 HOH A 38 538 36 HOH HOH . C 3 HOH A 39 539 37 HOH HOH . C 3 HOH A 40 540 9 HOH HOH . C 3 HOH A 41 541 82 HOH HOH . C 3 HOH A 42 542 78 HOH HOH . C 3 HOH A 43 543 25 HOH HOH . C 3 HOH A 44 544 74 HOH HOH . C 3 HOH A 45 545 65 HOH HOH . C 3 HOH A 46 546 59 HOH HOH . C 3 HOH A 47 547 30 HOH HOH . C 3 HOH A 48 548 7 HOH HOH . C 3 HOH A 49 549 32 HOH HOH . C 3 HOH A 50 550 48 HOH HOH . C 3 HOH A 51 551 91 HOH HOH . C 3 HOH A 52 552 58 HOH HOH . C 3 HOH A 53 553 42 HOH HOH . C 3 HOH A 54 554 15 HOH HOH . C 3 HOH A 55 555 49 HOH HOH . C 3 HOH A 56 556 83 HOH HOH . C 3 HOH A 57 557 10 HOH HOH . C 3 HOH A 58 558 23 HOH HOH . C 3 HOH A 59 559 57 HOH HOH . C 3 HOH A 60 560 6 HOH HOH . C 3 HOH A 61 561 68 HOH HOH . C 3 HOH A 62 562 33 HOH HOH . C 3 HOH A 63 563 18 HOH HOH . C 3 HOH A 64 564 90 HOH HOH . C 3 HOH A 65 565 35 HOH HOH . C 3 HOH A 66 566 84 HOH HOH . C 3 HOH A 67 567 64 HOH HOH . C 3 HOH A 68 568 89 HOH HOH . C 3 HOH A 69 569 14 HOH HOH . C 3 HOH A 70 570 85 HOH HOH . C 3 HOH A 71 571 56 HOH HOH . C 3 HOH A 72 572 87 HOH HOH . C 3 HOH A 73 573 62 HOH HOH . C 3 HOH A 74 574 72 HOH HOH . C 3 HOH A 75 575 71 HOH HOH . C 3 HOH A 76 576 67 HOH HOH . C 3 HOH A 77 577 75 HOH HOH . C 3 HOH A 78 578 77 HOH HOH . C 3 HOH A 79 579 73 HOH HOH . C 3 HOH A 80 580 44 HOH HOH . C 3 HOH A 81 581 76 HOH HOH . C 3 HOH A 82 582 47 HOH HOH . C 3 HOH A 83 583 22 HOH HOH . C 3 HOH A 84 584 16 HOH HOH . C 3 HOH A 85 585 39 HOH HOH . C 3 HOH A 86 586 61 HOH HOH . C 3 HOH A 87 587 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 WDK . . . B 2 -11.416 13.56 67.374 1 48.67 ? C1 WDK 401 A 1 HETATM 2 C C10 WDK . . . B 2 -10.07 10.683 68.514 1 62.34 ? C10 WDK 401 A 1 HETATM 3 C C11 WDK . . . B 2 -9.916 8.345 67.833 1 54.86 ? C11 WDK 401 A 1 HETATM 4 C C12 WDK . . . B 2 -10.573 7.1 68.432 1 58.34 ? C12 WDK 401 A 1 HETATM 5 C C13 WDK . . . B 2 -10.473 7.256 69.95 1 67.71 ? C13 WDK 401 A 1 HETATM 6 C C14 WDK . . . B 2 -11.547 7.761 70.669 1 66.41 ? C14 WDK 401 A 1 HETATM 7 C C15 WDK . . . B 2 -11.459 7.914 72.045 1 69.91 ? C15 WDK 401 A 1 HETATM 8 C C16 WDK . . . B 2 -10.291 7.563 72.707 1 76.46 ? C16 WDK 401 A 1 HETATM 9 C C17 WDK . . . B 2 -9.211 7.055 71.992 1 76.62 ? C17 WDK 401 A 1 HETATM 10 C C18 WDK . . . B 2 -9.302 6.904 70.612 1 70.28 ? C18 WDK 401 A 1 HETATM 11 C C19 WDK . . . B 2 -9.913 8.286 66.308 1 57.73 ? C19 WDK 401 A 1 HETATM 12 C C2 WDK . . . B 2 -10.914 11.847 69.023 1 52.37 ? C2 WDK 401 A 1 HETATM 13 C C20 WDK . . . B 2 -9.078 7.101 65.816 1 64.55 ? C20 WDK 401 A 1 HETATM 14 C C21 WDK . . . B 2 -8.936 4.988 64.574 1 69.44 ? C21 WDK 401 A 1 HETATM 15 C C22 WDK . . . B 2 -9.934 3.867 64.27 1 71.17 ? C22 WDK 401 A 1 HETATM 16 C C23 WDK . . . B 2 -9.35 2.82 63.314 1 79.09 ? C23 WDK 401 A 1 HETATM 17 C C24 WDK . . . B 2 -8.276 2.612 61.193 1 73.58 ? C24 WDK 401 A 1 HETATM 18 C C25 WDK . . . B 2 -10.618 2.988 61.286 1 77.9 ? C25 WDK 401 A 1 HETATM 19 C C26 WDK . . . B 2 -10.984 14.807 66.607 1 48.6 ? C26 WDK 401 A 1 HETATM 20 C C27 WDK . . . B 2 -11.224 14.622 65.092 1 45.3 ? C27 WDK 401 A 1 HETATM 21 C C28 WDK . . . B 2 -10.411 13.417 64.614 1 47.09 ? C28 WDK 401 A 1 HETATM 22 C C29 WDK . . . B 2 -10.98 12.434 63.814 1 45.95 ? C29 WDK 401 A 1 HETATM 23 C C3 WDK . . . B 2 -10.611 12.08 70.503 1 56.92 ? C3 WDK 401 A 1 HETATM 24 C C30 WDK . . . B 2 -12.435 12.558 63.39 1 45.58 ? C30 WDK 401 A 1 HETATM 25 C C31 WDK . . . B 2 -10.236 11.336 63.386 1 46.04 ? C31 WDK 401 A 1 HETATM 26 C C32 WDK . . . B 2 -8.905 11.219 63.78 1 49.88 ? C32 WDK 401 A 1 HETATM 27 C C33 WDK . . . B 2 -8.328 12.196 64.589 1 45.11 ? C33 WDK 401 A 1 HETATM 28 C C34 WDK . . . B 2 -9.076 13.291 65.008 1 50.31 ? C34 WDK 401 A 1 HETATM 29 C C4 WDK . . . B 2 -11.69 13.005 71.067 1 65.64 ? C4 WDK 401 A 1 HETATM 30 C C5 WDK . . . B 2 -12.834 12.469 71.654 1 78.97 ? C5 WDK 401 A 1 HETATM 31 C C6 WDK . . . B 2 -13.818 13.306 72.157 1 76.51 ? C6 WDK 401 A 1 HETATM 32 C C7 WDK . . . B 2 -13.672 14.68 72.069 1 81.94 ? C7 WDK 401 A 1 HETATM 33 C C8 WDK . . . B 2 -12.531 15.222 71.477 1 67.3 ? C8 WDK 401 A 1 HETATM 34 C C9 WDK . . . B 2 -11.541 14.385 70.978 1 62.01 ? C9 WDK 401 A 1 HETATM 35 CL CL1 WDK . . . B 2 -13.063 10.76 71.775 1 96.3 ? CL1 WDK 401 A 1 HETATM 36 CL CL2 WDK . . . B 2 -14.926 15.691 72.702 1 104.85 ? CL2 WDK 401 A 1 HETATM 37 F F1 WDK . . . B 2 -10.216 7.718 74.042 1 69.7 ? F1 WDK 401 A 1 HETATM 38 N N1 WDK . . . B 2 -10.58 13.03 68.258 1 49.66 ? N1 WDK 401 A 1 HETATM 39 N N2 WDK . . . B 2 -10.651 9.504 68.303 1 60.24 ? N2 WDK 401 A 1 HETATM 40 N N3 WDK . . . B 2 -9.66 6.146 65.082 1 69.35 ? N3 WDK 401 A 1 HETATM 41 N N4 WDK . . . B 2 -9.344 3.277 61.926 1 81.1 ? N4 WDK 401 A 1 HETATM 42 N N5 WDK . . . B 2 -11.706 15.955 67.138 1 54.43 ? N5 WDK 401 A 1 HETATM 43 N N6 WDK . . . B 2 -13.494 12.639 63.083 1 31.61 ? N6 WDK 401 A 1 HETATM 44 O O1 WDK . . . B 2 -12.482 13.07 67.171 1 48.95 ? O1 WDK 401 A 1 HETATM 45 O O2 WDK . . . B 2 -7.924 7.046 66.083 1 65.29 ? O2 WDK 401 A 1 HETATM 46 O O3 WDK . . . B 2 -8.91 10.838 68.314 1 62.05 ? O3 WDK 401 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 46 #