data_8UE9 # _model_server_result.job_id 1Gdo2WYouQQv6jenePNEVg _model_server_result.datetime_utc '2024-11-22 18:51:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ue9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":404}' # _entry.id 8UE9 # _exptl.entry_id 8UE9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2,4-dichlorophenyl)methyl]-4-(2,5-dioxopyrrolidin-1-yl)benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UE9 _cell.length_a 67.069 _cell.length_b 119.776 _cell.length_c 129.708 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UE9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 59 A CYS 93 1_555 B SG CYS 59 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A SG CYS 97 A CYS 131 1_555 E C17 WUU . A WUU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale2 B SG CYS 97 B CYS 131 1_555 U C17 WUU . B WUU 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc1 A O THR 108 A THR 142 1_555 G K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.221 ? metalc ? metalc2 A OG1 THR 108 A THR 142 1_555 G K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc3 A O THR 108 A THR 142 1_555 J K K . A K 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc4 A O GLY 110 A GLY 144 1_555 H K K . A K 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? metalc ? metalc5 A O GLY 110 A GLY 144 1_555 I K K . A K 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc6 A O PHE 111 A PHE 145 1_555 H K K . A K 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc7 A O THR 217 A THR 251 1_555 G K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc8 A OG1 THR 217 A THR 251 1_555 G K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc9 A O THR 217 A THR 251 1_555 J K K . A K 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc10 A O ILE 218 A ILE 252 1_555 I K K . A K 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc11 A O ILE 218 A ILE 252 1_555 J K K . A K 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc12 A O GLY 219 A GLY 253 1_555 H K K . A K 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? metalc ? metalc13 A O GLY 219 A GLY 253 1_555 I K K . A K 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc14 A O PHE 220 A PHE 254 1_555 H K K . A K 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc15 G K K . A K 605 1_555 B O THR 108 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.26 ? metalc ? metalc16 G K K . A K 605 1_555 B OG1 THR 108 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc17 G K K . A K 605 1_555 B O THR 217 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc18 G K K . A K 605 1_555 B OG1 THR 217 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc19 H K K . A K 606 1_555 B O GLY 110 B GLY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc20 H K K . A K 606 1_555 B O PHE 111 B PHE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc21 H K K . A K 606 1_555 B O GLY 219 B GLY 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.198 ? metalc ? metalc22 H K K . A K 606 1_555 B O PHE 220 B PHE 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc23 I K K . A K 607 1_555 B O GLY 110 B GLY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc24 I K K . A K 607 1_555 B O ILE 218 B ILE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc25 I K K . A K 607 1_555 B O GLY 219 B GLY 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc26 J K K . A K 608 1_555 B O THR 108 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc27 J K K . A K 608 1_555 B O THR 217 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc28 J K K . A K 608 1_555 B O ILE 218 B ILE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? # _chem_comp.formula 'C18 H14 Cl2 N2 O3' _chem_comp.formula_weight 377.221 _chem_comp.id WUU _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2,4-dichlorophenyl)methyl]-4-(2,5-dioxopyrrolidin-1-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 WUU sing 529 n n C17 C16 WUU sing 530 n n O3 C18 WUU doub 531 n n C18 N2 WUU sing 532 n n C1 C6 WUU doub 533 n y C1 C2 WUU sing 534 n y C16 C15 WUU sing 535 n n C6 C5 WUU sing 536 n y N2 C15 WUU sing 537 n n N2 C2 WUU sing 538 n n C15 O2 WUU doub 539 n n C2 C3 WUU doub 540 n y O1 C7 WUU doub 541 n n C10 C9 WUU doub 542 n y C10 C11 WUU sing 543 n y CL1 C11 WUU sing 544 n n C5 C7 WUU sing 545 n n C5 C4 WUU doub 546 n y C9 C8 WUU sing 547 n y C7 N1 WUU sing 548 n n C3 C4 WUU sing 549 n y C11 C12 WUU doub 550 n y C8 C14 WUU sing 551 n n C8 C13 WUU doub 552 n y N1 C14 WUU sing 553 n n C12 C13 WUU sing 554 n y C13 CL2 WUU sing 555 n n C1 H1 WUU sing 556 n n C3 H2 WUU sing 557 n n C10 H3 WUU sing 558 n n C12 H4 WUU sing 559 n n C14 H5 WUU sing 560 n n C14 H6 WUU sing 561 n n C16 H7 WUU sing 562 n n C16 H8 WUU sing 563 n n C17 H9 WUU sing 564 n n C17 H10 WUU sing 565 n n C4 H11 WUU sing 566 n n C6 H12 WUU sing 567 n n C9 H13 WUU sing 568 n n N1 H14 WUU sing 569 n n # _atom_sites.entry_id 8UE9 _atom_sites.fract_transf_matrix[1][1] 0.01491 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 R16 A 1 601 601 R16 R16 . D 2 R16 A 1 602 701 R16 R16 . E 3 WUU A 1 603 1001 WUU MLA . F 4 16C A 1 604 701 16C 16C . G 5 K A 1 605 1 K K . H 5 K A 1 606 3 K K . I 5 K A 1 607 4 K K . J 5 K A 1 608 6 K K . K 5 K A 1 609 7 K K . L 2 R16 A 1 610 15 R16 R16 . M 2 R16 A 1 611 16 R16 R16 . N 2 R16 A 1 612 18 R16 R16 . O 2 R16 A 1 613 19 R16 R16 . P 2 R16 A 1 614 20 R16 R16 . Q 2 R16 A 1 615 21 R16 R16 . R 2 R16 B 1 401 401 R16 R16 . S 2 R16 B 1 402 501 R16 R16 . T 2 R16 B 1 403 601 R16 R16 . U 3 WUU B 1 404 801 WUU MLA . V 2 R16 B 1 405 2 R16 R16 . W 2 R16 B 1 406 17 R16 R16 . X 6 CD B 1 407 1 CD CD . Y 7 HOH B 1 501 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 WUU . . . U 3 9.379 -38.099 -21.37 1 128.65 ? C1 WUU 404 B 1 HETATM 2 C C2 WUU . . . U 3 8.131 -38.339 -21.877 1 135.37 ? C2 WUU 404 B 1 HETATM 3 C C3 WUU . . . U 3 7.791 -37.833 -23.11 1 137.26 ? C3 WUU 404 B 1 HETATM 4 C C10 WUU . . . U 3 11.699 -31.441 -24.531 1 107.7 ? C10 WUU 404 B 1 HETATM 5 C C11 WUU . . . U 3 10.665 -30.805 -25.201 1 109.06 ? C11 WUU 404 B 1 HETATM 6 C C12 WUU . . . U 3 9.966 -31.471 -26.196 1 108.28 ? C12 WUU 404 B 1 HETATM 7 C C13 WUU . . . U 3 10.306 -32.775 -26.517 1 122.15 ? C13 WUU 404 B 1 HETATM 8 C C14 WUU . . . U 3 11.696 -34.846 -26.203 1 122.75 ? C14 WUU 404 B 1 HETATM 9 C C15 WUU . . . U 3 7.058 -40.579 -20.95 1 161.94 ? C15 WUU 404 B 1 HETATM 10 C C16 WUU . . . U 3 5.918 -40.833 -19.991 1 167.84 ? C16 WUU 404 B 1 HETATM 11 C C17 WUU . . . U 3 5.722 -39.584 -19.245 1 168.2 ? C17 WUU 404 B 1 HETATM 12 C C18 WUU . . . U 3 6.121 -38.491 -20.203 1 162.67 ? C18 WUU 404 B 1 HETATM 13 C C4 WUU . . . U 3 8.712 -37.102 -23.854 1 133.23 ? C4 WUU 404 B 1 HETATM 14 C C5 WUU . . . U 3 9.996 -36.88 -23.335 1 132.31 ? C5 WUU 404 B 1 HETATM 15 C C6 WUU . . . U 3 10.323 -37.384 -22.076 1 135.06 ? C6 WUU 404 B 1 HETATM 16 C C7 WUU . . . U 3 11.021 -36.068 -24.123 1 132.52 ? C7 WUU 404 B 1 HETATM 17 C C8 WUU . . . U 3 11.345 -33.405 -25.852 1 131.98 ? C8 WUU 404 B 1 HETATM 18 C C9 WUU . . . U 3 12.04 -32.744 -24.853 1 99.68 ? C9 WUU 404 B 1 HETATM 19 N N1 WUU . . . U 3 10.729 -35.646 -25.478 1 128.28 ? N1 WUU 404 B 1 HETATM 20 N N2 WUU . . . U 3 7.18 -39.089 -21.079 1 156.26 ? N2 WUU 404 B 1 HETATM 21 O O1 WUU . . . U 3 12.052 -35.765 -23.624 1 123.87 ? O1 WUU 404 B 1 HETATM 22 O O2 WUU . . . U 3 7.731 -41.394 -21.485 1 147.86 ? O2 WUU 404 B 1 HETATM 23 O O3 WUU . . . U 3 5.7 -37.383 -20.26 1 156.72 ? O3 WUU 404 B 1 HETATM 24 CL CL1 WUU . . . U 3 10.234 -29.126 -24.776 1 108.59 ? CL1 WUU 404 B 1 HETATM 25 CL CL2 WUU . . . U 3 9.417 -33.649 -27.794 1 123.17 ? CL2 WUU 404 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #