data_8UEC # _model_server_result.job_id dbolZ7oYNmsfHBSyeNMWyg _model_server_result.datetime_utc '2024-11-27 01:09:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 8UEC # _exptl.entry_id 8UEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.248 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2,4-dichlorophenyl)methyl]-4-[(3R)-3-methyl-2,5-dioxopyrrolidin-1-yl]benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UEC _cell.length_a 67.213 _cell.length_b 120.568 _cell.length_c 128.613 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 97 A CYS 131 1_555 G C17 WUZ . A WUZ 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale2 B SG CYS 97 B CYS 131 1_555 U C17 WUZ . B WUZ 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? metalc ? metalc1 A O THR 108 A THR 142 1_555 J K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc2 A O GLY 110 A GLY 144 1_555 I K K . A K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc3 A O GLY 110 A GLY 144 1_555 K K K . A K 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc4 A O PHE 111 A PHE 145 1_555 K K K . A K 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc5 A O THR 217 A THR 251 1_555 J K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc6 A O THR 217 A THR 251 1_555 V K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc7 A OG1 THR 217 A THR 251 1_555 V K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.353 ? metalc ? metalc8 A O ILE 218 A ILE 252 1_555 I K K . A K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc9 A O ILE 218 A ILE 252 1_555 J K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc10 A O GLY 219 A GLY 253 1_555 I K K . A K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc11 A O GLY 219 A GLY 253 1_555 K K K . A K 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc12 A O PHE 220 A PHE 254 1_555 K K K . A K 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc13 A OE2 GLU 275 A GLU 309 1_555 N CD CD . A CD 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc14 I K K . A K 407 1_555 B O ILE 109 B ILE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc15 I K K . A K 407 1_555 B O GLY 110 B GLY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc16 I K K . A K 407 1_555 B O ILE 218 B ILE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc17 I K K . A K 407 1_555 B O GLY 219 B GLY 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? metalc ? metalc18 J K K . A K 408 1_555 B O THR 108 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc19 J K K . A K 408 1_555 B O ILE 109 B ILE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? metalc ? metalc20 J K K . A K 408 1_555 B O THR 217 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc21 J K K . A K 408 1_555 B O ILE 218 B ILE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc22 K K K . A K 409 1_555 B O GLY 110 B GLY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.363 ? metalc ? metalc23 K K K . A K 409 1_555 B O PHE 111 B PHE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.104 ? metalc ? metalc24 K K K . A K 409 1_555 B O GLY 219 B GLY 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.213 ? metalc ? metalc25 K K K . A K 409 1_555 B O PHE 220 B PHE 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc26 B O THR 108 B THR 142 1_555 V K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.153 ? metalc ? metalc27 B OG1 THR 108 B THR 142 1_555 V K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc28 B O THR 217 B THR 251 1_555 V K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc29 B OG1 THR 217 B THR 251 1_555 V K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? # _chem_comp.formula 'C19 H16 Cl2 N2 O3' _chem_comp.formula_weight 391.248 _chem_comp.id WUZ _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2,4-dichlorophenyl)methyl]-4-[(3R)-3-methyl-2,5-dioxopyrrolidin-1-yl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 WUZ sing 558 n n C17 C16 WUZ sing 559 n n O3 C18 WUZ doub 560 n n C18 N2 WUZ sing 561 n n C1 C6 WUZ doub 562 n y C1 C2 WUZ sing 563 n y C6 C5 WUZ sing 564 n y C16 C15 WUZ sing 565 n n C16 C01 WUZ sing 566 n n N2 C2 WUZ sing 567 n n N2 C15 WUZ sing 568 n n C2 C3 WUZ doub 569 n y C15 O2 WUZ doub 570 n n O1 C7 WUZ doub 571 n n C10 C9 WUZ doub 572 n y C10 C11 WUZ sing 573 n y CL1 C11 WUZ sing 574 n n C5 C7 WUZ sing 575 n n C5 C4 WUZ doub 576 n y C9 C8 WUZ sing 577 n y C11 C12 WUZ doub 578 n y C7 N1 WUZ sing 579 n n C3 C4 WUZ sing 580 n y C8 C14 WUZ sing 581 n n C8 C13 WUZ doub 582 n y C12 C13 WUZ sing 583 n y N1 C14 WUZ sing 584 n n C13 CL2 WUZ sing 585 n n C1 H1 WUZ sing 586 n n C3 H2 WUZ sing 587 n n C4 H3 WUZ sing 588 n n C6 H4 WUZ sing 589 n n C01 H5 WUZ sing 590 n n C01 H6 WUZ sing 591 n n C01 H7 WUZ sing 592 n n C10 H8 WUZ sing 593 n n C12 H9 WUZ sing 594 n n C14 H10 WUZ sing 595 n n C14 H11 WUZ sing 596 n n C16 H12 WUZ sing 597 n n C17 H13 WUZ sing 598 n n C17 H14 WUZ sing 599 n n C9 H15 WUZ sing 600 n n N1 H16 WUZ sing 601 n n # _atom_sites.entry_id 8UEC _atom_sites.fract_transf_matrix[1][1] 0.014878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 16C A 1 401 703 16C 16C . D 3 D10 A 1 402 704 D10 D10 . E 3 D10 A 1 403 706 D10 D10 . F 3 D10 A 1 404 707 D10 D10 . G 4 WUZ A 1 405 708 WUZ MLB . H 3 D10 A 1 406 802 D10 D10 . I 5 K A 1 407 9 K K . J 5 K A 1 408 13 K K . K 5 K A 1 409 17 K K . L 6 R16 A 1 410 21 R16 R16 . M 7 CD A 1 411 4 CD CD . N 7 CD A 1 412 5 CD CD . O 3 D10 A 1 413 1 D10 D10 . P 3 D10 A 1 414 3 D10 D10 . Q 3 D10 B 1 401 803 D10 D10 . R 3 D10 B 1 402 804 D10 D10 . S 3 D10 B 1 403 807 D10 D10 . T 3 D10 B 1 404 808 D10 D10 . U 4 WUZ B 1 405 809 WUZ MLB . V 5 K B 1 406 12 K K . W 5 K B 1 407 19 K K . X 6 R16 B 1 408 19 R16 R16 . Y 6 R16 B 1 409 22 R16 R16 . Z 7 CD B 1 410 1 CD CD . AA 3 D10 B 1 411 2 D10 D10 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 WUZ . . . G 4 -13.682 -19.877 -31.038 1 97.32 ? O1 WUZ 405 A 1 HETATM 2 C C1 WUZ . . . G 4 -15.201 -23.68 -31.935 1 131.55 ? C1 WUZ 405 A 1 HETATM 3 C C2 WUZ . . . G 4 -14.853 -24.717 -31.1 1 117.81 ? C2 WUZ 405 A 1 HETATM 4 C C3 WUZ . . . G 4 -14.101 -24.475 -29.963 1 91.53 ? C3 WUZ 405 A 1 HETATM 5 C C4 WUZ . . . G 4 -13.709 -23.178 -29.659 1 89.15 ? C4 WUZ 405 A 1 HETATM 6 C C5 WUZ . . . G 4 -14.086 -22.132 -30.5 1 94.29 ? C5 WUZ 405 A 1 HETATM 7 C C6 WUZ . . . G 4 -14.829 -22.388 -31.646 1 114.81 ? C6 WUZ 405 A 1 HETATM 8 O O2 WUZ . . . G 4 -17.444 -26.262 -30.454 1 138.42 ? O2 WUZ 405 A 1 HETATM 9 O O3 WUZ . . . G 4 -13.276 -27.066 -32.432 1 123.06 ? O3 WUZ 405 A 1 HETATM 10 C C01 WUZ . . . G 4 -16.029 -29.11 -30.52 1 155.9 ? C01 WUZ 405 A 1 HETATM 11 C C10 WUZ . . . G 4 -9.808 -18.254 -30.874 1 109.97 ? C10 WUZ 405 A 1 HETATM 12 C C11 WUZ . . . G 4 -8.767 -18.875 -30.192 1 120.46 ? C11 WUZ 405 A 1 HETATM 13 C C12 WUZ . . . G 4 -9.014 -19.537 -28.998 1 114.19 ? C12 WUZ 405 A 1 HETATM 14 C C13 WUZ . . . G 4 -10.302 -19.576 -28.488 1 98.53 ? C13 WUZ 405 A 1 HETATM 15 C C14 WUZ . . . G 4 -12.756 -18.999 -28.605 1 109.21 ? C14 WUZ 405 A 1 HETATM 16 C C15 WUZ . . . G 4 -16.543 -26.734 -31.066 1 138.46 ? C15 WUZ 405 A 1 HETATM 17 C C16 WUZ . . . G 4 -16.479 -28.131 -31.64 1 150.55 ? C16 WUZ 405 A 1 HETATM 18 C C17 WUZ . . . G 4 -15.447 -28.123 -32.712 1 148.94 ? C17 WUZ 405 A 1 HETATM 19 C C18 WUZ . . . G 4 -14.442 -27.082 -32.222 1 129.36 ? C18 WUZ 405 A 1 HETATM 20 C C7 WUZ . . . G 4 -13.649 -20.704 -30.184 1 95.58 ? C7 WUZ 405 A 1 HETATM 21 C C8 WUZ . . . G 4 -11.335 -18.944 -29.164 1 106.9 ? C8 WUZ 405 A 1 HETATM 22 C C9 WUZ . . . G 4 -11.091 -18.293 -30.362 1 96.77 ? C9 WUZ 405 A 1 HETATM 23 N N1 WUZ . . . G 4 -13.19 -20.36 -28.851 1 88.71 ? N1 WUZ 405 A 1 HETATM 24 N N2 WUZ . . . G 4 -15.256 -26.069 -31.432 1 138.02 ? N2 WUZ 405 A 1 HETATM 25 CL CL1 WUZ . . . G 4 -7.115 -18.824 -30.859 1 104.69 ? CL1 WUZ 405 A 1 HETATM 26 CL CL2 WUZ . . . G 4 -10.619 -20.423 -26.947 1 95.78 ? CL2 WUZ 405 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #