data_8UF3 # _model_server_result.job_id 4DY4i8T-iGV5sXMJz2br4w _model_server_result.datetime_utc '2024-11-22 08:15:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uf3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8UF3 # _exptl.entry_id 8UF3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UF3 _cell.length_a 168.047 _cell.length_b 168.047 _cell.length_c 168.047 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UF3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall 'I 2 2 3' _symmetry.space_group_name_H-M 'I 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 17 1_555 C CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale2 A SG CYS 22 A CYS 20 1_555 C CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? covale ? covale3 A SG CYS 119 A CYS 117 1_555 D CAB HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale4 A SG CYS 122 A CYS 120 1_555 D CAC HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? covale ? covale5 B SG CYS 19 B CYS 17 1_555 F CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale6 B SG CYS 22 B CYS 20 1_555 F CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? covale ? covale7 B SG CYS 119 B CYS 117 1_555 G CAB HEC . B HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale8 B SG CYS 122 B CYS 120 1_555 G CAC HEC . B HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? metalc ? metalc1 A NE2 HIS 23 A HIS 21 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc2 A SD MET 65 A MET 63 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc3 A NE2 HIS 123 A HIS 121 1_555 D FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc4 A SD MET 168 A MET 166 1_555 D FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc5 B NE2 HIS 23 B HIS 21 1_555 F FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc6 B SD MET 65 B MET 63 1_555 F FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc7 B NE2 HIS 123 B HIS 121 1_555 G FE HEC . B HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc8 B SD MET 168 B MET 166 1_555 G FE HEC . B HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 8UF3 _atom_sites.fract_transf_matrix[1][1] 0.005951 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005951 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 201 201 HEC HEC . D 2 HEC A 1 202 202 HEC HEC . E 3 SO4 A 1 203 57 SO4 SO4 . F 2 HEC B 1 201 201 HEC HEC . G 2 HEC B 1 202 202 HEC HEC . H 3 SO4 B 1 203 56 SO4 SO4 . I 3 SO4 B 1 204 58 SO4 SO4 . J 4 HOH A 1 301 3 HOH HOH . J 4 HOH A 2 302 7 HOH HOH . J 4 HOH A 3 303 2 HOH HOH . J 4 HOH A 4 304 15 HOH HOH . J 4 HOH A 5 305 10 HOH HOH . J 4 HOH A 6 306 11 HOH HOH . J 4 HOH A 7 307 9 HOH HOH . J 4 HOH A 8 308 12 HOH HOH . J 4 HOH A 9 309 43 HOH HOH . J 4 HOH A 10 310 39 HOH HOH . J 4 HOH A 11 311 26 HOH HOH . J 4 HOH A 12 312 13 HOH HOH . J 4 HOH A 13 313 1 HOH HOH . J 4 HOH A 14 314 4 HOH HOH . J 4 HOH A 15 315 21 HOH HOH . J 4 HOH A 16 316 38 HOH HOH . J 4 HOH A 17 317 19 HOH HOH . J 4 HOH A 18 318 27 HOH HOH . J 4 HOH A 19 319 14 HOH HOH . J 4 HOH A 20 320 40 HOH HOH . J 4 HOH A 21 321 20 HOH HOH . J 4 HOH A 22 322 31 HOH HOH . J 4 HOH A 23 323 37 HOH HOH . J 4 HOH A 24 324 16 HOH HOH . J 4 HOH A 25 325 52 HOH HOH . J 4 HOH A 26 326 18 HOH HOH . J 4 HOH A 27 327 33 HOH HOH . J 4 HOH A 28 328 17 HOH HOH . J 4 HOH A 29 329 47 HOH HOH . J 4 HOH A 30 330 28 HOH HOH . J 4 HOH A 31 331 30 HOH HOH . K 4 HOH B 1 301 6 HOH HOH . K 4 HOH B 2 302 24 HOH HOH . K 4 HOH B 3 303 8 HOH HOH . K 4 HOH B 4 304 25 HOH HOH . K 4 HOH B 5 305 22 HOH HOH . K 4 HOH B 6 306 23 HOH HOH . K 4 HOH B 7 307 5 HOH HOH . K 4 HOH B 8 308 48 HOH HOH . K 4 HOH B 9 309 49 HOH HOH . K 4 HOH B 10 310 51 HOH HOH . K 4 HOH B 11 311 32 HOH HOH . K 4 HOH B 12 312 45 HOH HOH . K 4 HOH B 13 313 36 HOH HOH . K 4 HOH B 14 314 35 HOH HOH . K 4 HOH B 15 315 41 HOH HOH . K 4 HOH B 16 316 50 HOH HOH . K 4 HOH B 17 317 34 HOH HOH . K 4 HOH B 18 318 29 HOH HOH . K 4 HOH B 19 319 42 HOH HOH . K 4 HOH B 20 320 46 HOH HOH . K 4 HOH B 21 321 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 2 -45.393 -58.934 -8.429 1 42.27 ? FE HEC 201 A 1 HETATM 2 C CHA HEC . . . C 2 -46.098 -61.741 -10.239 1 37.07 ? CHA HEC 201 A 1 HETATM 3 C CHB HEC . . . C 2 -46.242 -57.061 -11.252 1 40.64 ? CHB HEC 201 A 1 HETATM 4 C CHC HEC . . . C 2 -44.788 -55.977 -6.767 1 46.67 ? CHC HEC 201 A 1 HETATM 5 C CHD HEC . . . C 2 -44.399 -60.674 -5.712 1 43.79 ? CHD HEC 201 A 1 HETATM 6 N NA HEC . . . C 2 -46.072 -59.327 -10.402 1 41.76 ? NA HEC 201 A 1 HETATM 7 C C1A HEC . . . C 2 -46.239 -60.574 -10.948 1 38.63 ? C1A HEC 201 A 1 HETATM 8 C C2A HEC . . . C 2 -46.576 -60.411 -12.37 1 42.16 ? C2A HEC 201 A 1 HETATM 9 C C3A HEC . . . C 2 -46.608 -59.1 -12.637 1 43.16 ? C3A HEC 201 A 1 HETATM 10 C C4A HEC . . . C 2 -46.293 -58.411 -11.401 1 41.13 ? C4A HEC 201 A 1 HETATM 11 C CMA HEC . . . C 2 -46.929 -58.419 -13.987 1 32.67 ? CMA HEC 201 A 1 HETATM 12 C CAA HEC . . . C 2 -46.859 -61.531 -13.396 1 37.73 ? CAA HEC 201 A 1 HETATM 13 C CBA HEC . . . C 2 -45.566 -61.849 -14.118 1 36.07 ? CBA HEC 201 A 1 HETATM 14 C CGA HEC . . . C 2 -45.8 -62.876 -15.2 1 40.07 ? CGA HEC 201 A 1 HETATM 15 O O1A HEC . . . C 2 -44.804 -63.201 -15.905 1 42.15 ? O1A HEC 201 A 1 HETATM 16 O O2A HEC . . . C 2 -46.939 -63.357 -15.371 1 36.83 ? O2A HEC 201 A 1 HETATM 17 N NB HEC . . . C 2 -45.52 -56.968 -8.891 1 39.17 ? NB HEC 201 A 1 HETATM 18 C C1B HEC . . . C 2 -45.872 -56.421 -10.108 1 43.06 ? C1B HEC 201 A 1 HETATM 19 C C2B HEC . . . C 2 -45.86 -54.996 -10.015 1 42.27 ? C2B HEC 201 A 1 HETATM 20 C C3B HEC . . . C 2 -45.438 -54.663 -8.792 1 45.68 ? C3B HEC 201 A 1 HETATM 21 C C4B HEC . . . C 2 -45.242 -55.899 -8.059 1 45.43 ? C4B HEC 201 A 1 HETATM 22 C CMB HEC . . . C 2 -46.18 -54.105 -11.228 1 42.51 ? CMB HEC 201 A 1 HETATM 23 C CAB HEC . . . C 2 -45.223 -53.234 -8.227 1 45.54 ? CAB HEC 201 A 1 HETATM 24 C CBB HEC . . . C 2 -46.526 -52.42 -8.385 1 42.37 ? CBB HEC 201 A 1 HETATM 25 N NC HEC . . . C 2 -44.714 -58.417 -6.574 1 46.54 ? NC HEC 201 A 1 HETATM 26 C C1C HEC . . . C 2 -44.529 -57.138 -6.095 1 43.57 ? C1C HEC 201 A 1 HETATM 27 C C2C HEC . . . C 2 -44.183 -57.215 -4.704 1 45.36 ? C2C HEC 201 A 1 HETATM 28 C C3C HEC . . . C 2 -43.925 -58.508 -4.44 1 43.91 ? C3C HEC 201 A 1 HETATM 29 C C4C HEC . . . C 2 -44.357 -59.299 -5.587 1 42.38 ? C4C HEC 201 A 1 HETATM 30 C CMC HEC . . . C 2 -43.727 -55.969 -3.898 1 46.25 ? CMC HEC 201 A 1 HETATM 31 C CAC HEC . . . C 2 -43.388 -59.089 -3.102 1 46.34 ? CAC HEC 201 A 1 HETATM 32 C CBC HEC . . . C 2 -44.434 -59.04 -1.973 1 45.78 ? CBC HEC 201 A 1 HETATM 33 N ND HEC . . . C 2 -45.27 -60.865 -8.04 1 42.07 ? ND HEC 201 A 1 HETATM 34 C C1D HEC . . . C 2 -44.823 -61.393 -6.821 1 45.84 ? C1D HEC 201 A 1 HETATM 35 C C2D HEC . . . C 2 -44.896 -62.85 -6.911 1 44.49 ? C2D HEC 201 A 1 HETATM 36 C C3D HEC . . . C 2 -45.422 -63.169 -8.32 1 43.37 ? C3D HEC 201 A 1 HETATM 37 C C4D HEC . . . C 2 -45.627 -61.88 -8.95 1 41.34 ? C4D HEC 201 A 1 HETATM 38 C CMD HEC . . . C 2 -44.526 -63.906 -5.854 1 45.54 ? CMD HEC 201 A 1 HETATM 39 C CAD HEC . . . C 2 -45.677 -64.58 -8.937 1 42.25 ? CAD HEC 201 A 1 HETATM 40 C CBD HEC . . . C 2 -46.968 -65.182 -8.421 1 39.6 ? CBD HEC 201 A 1 HETATM 41 C CGD HEC . . . C 2 -47.075 -66.578 -8.964 1 43.68 ? CGD HEC 201 A 1 HETATM 42 O O1D HEC . . . C 2 -47.874 -66.806 -9.921 1 47.81 ? O1D HEC 201 A 1 HETATM 43 O O2D HEC . . . C 2 -46.377 -67.47 -8.427 1 43.2 ? O2D HEC 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #