data_8UF3
#
_model_server_result.job_id            zdKVKLdqqgI5IhVCyApInw 
_model_server_result.datetime_utc      '2024-11-22 08:43:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8uf3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":201}' 
#
_entry.id    8UF3 
#
_exptl.entry_id    8UF3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8UF3 
_cell.length_a            168.047 
_cell.length_b            168.047 
_cell.length_c            168.047 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UF3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    'I 2 2 3' 
_symmetry.space_group_name_H-M     'I 2 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,J 1 1 
B,F,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 F N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 19 A CYS 17 1_555 C CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
covale ? covale2 A SG CYS 22 A CYS 20 1_555 C CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? 
covale ? covale3 A SG CYS 119 A CYS 117 1_555 D CAB HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale4 A SG CYS 122 A CYS 120 1_555 D CAC HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? 
covale ? covale5 B SG CYS 19 B CYS 17 1_555 F CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale6 B SG CYS 22 B CYS 20 1_555 F CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? 
covale ? covale7 B SG CYS 119 B CYS 117 1_555 G CAB HEC . B HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale8 B SG CYS 122 B CYS 120 1_555 G CAC HEC . B HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? 
metalc ? metalc1 A NE2 HIS 23 A HIS 21 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc2 A SD MET 65 A MET 63 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc3 A NE2 HIS 123 A HIS 121 1_555 D FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc4 A SD MET 168 A MET 166 1_555 D FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc5 B NE2 HIS 23 B HIS 21 1_555 F FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc6 B SD MET 65 B MET 63 1_555 F FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc7 B NE2 HIS 123 B HIS 121 1_555 G FE HEC . B HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc8 B SD MET 168 B MET 166 1_555 G FE HEC . B HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 129 n n 
FE NB HEC sing 130 n n 
FE NC HEC sing 131 n n 
FE ND HEC sing 132 n n 
CHA C1A HEC doub 133 n n 
CHA C4D HEC sing 134 n n 
CHA HHA HEC sing 135 n n 
CHB C4A HEC doub 136 n n 
CHB C1B HEC sing 137 n n 
CHB HHB HEC sing 138 n n 
CHC C4B HEC doub 139 n n 
CHC C1C HEC sing 140 n n 
CHC HHC HEC sing 141 n n 
CHD C4C HEC doub 142 n n 
CHD C1D HEC sing 143 n n 
CHD HHD HEC sing 144 n n 
NA C1A HEC sing 145 n y 
NA C4A HEC sing 146 n y 
C1A C2A HEC sing 147 n y 
C2A C3A HEC doub 148 n y 
C2A CAA HEC sing 149 n n 
C3A C4A HEC sing 150 n y 
C3A CMA HEC sing 151 n n 
CMA HMA1 HEC sing 152 n n 
CMA HMA2 HEC sing 153 n n 
CMA HMA3 HEC sing 154 n n 
CAA CBA HEC sing 155 n n 
CAA HAA1 HEC sing 156 n n 
CAA HAA2 HEC sing 157 n n 
CBA CGA HEC sing 158 n n 
CBA HBA1 HEC sing 159 n n 
CBA HBA2 HEC sing 160 n n 
CGA O1A HEC doub 161 n n 
CGA O2A HEC sing 162 n n 
O2A H2A HEC sing 163 n n 
NB C1B HEC sing 164 n y 
NB C4B HEC sing 165 n y 
C1B C2B HEC doub 166 n y 
C2B C3B HEC sing 167 n y 
C2B CMB HEC sing 168 n n 
C3B C4B HEC sing 169 n y 
C3B CAB HEC doub 170 e n 
CMB HMB1 HEC sing 171 n n 
CMB HMB2 HEC sing 172 n n 
CMB HMB3 HEC sing 173 n n 
CAB CBB HEC sing 174 n n 
CAB HAB HEC sing 175 n n 
CBB HBB1 HEC sing 176 n n 
CBB HBB2 HEC sing 177 n n 
CBB HBB3 HEC sing 178 n n 
NC C1C HEC sing 179 n y 
NC C4C HEC sing 180 n y 
C1C C2C HEC doub 181 n y 
C2C C3C HEC sing 182 n y 
C2C CMC HEC sing 183 n n 
C3C C4C HEC sing 184 n y 
C3C CAC HEC doub 185 e n 
CMC HMC1 HEC sing 186 n n 
CMC HMC2 HEC sing 187 n n 
CMC HMC3 HEC sing 188 n n 
CAC CBC HEC sing 189 n n 
CAC HAC HEC sing 190 n n 
CBC HBC1 HEC sing 191 n n 
CBC HBC2 HEC sing 192 n n 
CBC HBC3 HEC sing 193 n n 
ND C1D HEC sing 194 n y 
ND C4D HEC sing 195 n y 
C1D C2D HEC doub 196 n y 
C2D C3D HEC sing 197 n y 
C2D CMD HEC sing 198 n n 
C3D C4D HEC doub 199 n y 
C3D CAD HEC sing 200 n n 
CMD HMD1 HEC sing 201 n n 
CMD HMD2 HEC sing 202 n n 
CMD HMD3 HEC sing 203 n n 
CAD CBD HEC sing 204 n n 
CAD HAD1 HEC sing 205 n n 
CAD HAD2 HEC sing 206 n n 
CBD CGD HEC sing 207 n n 
CBD HBD1 HEC sing 208 n n 
CBD HBD2 HEC sing 209 n n 
CGD O1D HEC doub 210 n n 
CGD O2D HEC sing 211 n n 
O2D H2D HEC sing 212 n n 
#
_atom_sites.entry_id                     8UF3 
_atom_sites.fract_transf_matrix[1][1]    0.005951 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005951 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005951 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEC A 1 201 201 HEC HEC . 
D 2 HEC A 1 202 202 HEC HEC . 
E 3 SO4 A 1 203 57 SO4 SO4 . 
F 2 HEC B 1 201 201 HEC HEC . 
G 2 HEC B 1 202 202 HEC HEC . 
H 3 SO4 B 1 203 56 SO4 SO4 . 
I 3 SO4 B 1 204 58 SO4 SO4 . 
J 4 HOH A 1 301 3 HOH HOH . 
J 4 HOH A 2 302 7 HOH HOH . 
J 4 HOH A 3 303 2 HOH HOH . 
J 4 HOH A 4 304 15 HOH HOH . 
J 4 HOH A 5 305 10 HOH HOH . 
J 4 HOH A 6 306 11 HOH HOH . 
J 4 HOH A 7 307 9 HOH HOH . 
J 4 HOH A 8 308 12 HOH HOH . 
J 4 HOH A 9 309 43 HOH HOH . 
J 4 HOH A 10 310 39 HOH HOH . 
J 4 HOH A 11 311 26 HOH HOH . 
J 4 HOH A 12 312 13 HOH HOH . 
J 4 HOH A 13 313 1 HOH HOH . 
J 4 HOH A 14 314 4 HOH HOH . 
J 4 HOH A 15 315 21 HOH HOH . 
J 4 HOH A 16 316 38 HOH HOH . 
J 4 HOH A 17 317 19 HOH HOH . 
J 4 HOH A 18 318 27 HOH HOH . 
J 4 HOH A 19 319 14 HOH HOH . 
J 4 HOH A 20 320 40 HOH HOH . 
J 4 HOH A 21 321 20 HOH HOH . 
J 4 HOH A 22 322 31 HOH HOH . 
J 4 HOH A 23 323 37 HOH HOH . 
J 4 HOH A 24 324 16 HOH HOH . 
J 4 HOH A 25 325 52 HOH HOH . 
J 4 HOH A 26 326 18 HOH HOH . 
J 4 HOH A 27 327 33 HOH HOH . 
J 4 HOH A 28 328 17 HOH HOH . 
J 4 HOH A 29 329 47 HOH HOH . 
J 4 HOH A 30 330 28 HOH HOH . 
J 4 HOH A 31 331 30 HOH HOH . 
K 4 HOH B 1 301 6 HOH HOH . 
K 4 HOH B 2 302 24 HOH HOH . 
K 4 HOH B 3 303 8 HOH HOH . 
K 4 HOH B 4 304 25 HOH HOH . 
K 4 HOH B 5 305 22 HOH HOH . 
K 4 HOH B 6 306 23 HOH HOH . 
K 4 HOH B 7 307 5 HOH HOH . 
K 4 HOH B 8 308 48 HOH HOH . 
K 4 HOH B 9 309 49 HOH HOH . 
K 4 HOH B 10 310 51 HOH HOH . 
K 4 HOH B 11 311 32 HOH HOH . 
K 4 HOH B 12 312 45 HOH HOH . 
K 4 HOH B 13 313 36 HOH HOH . 
K 4 HOH B 14 314 35 HOH HOH . 
K 4 HOH B 15 315 41 HOH HOH . 
K 4 HOH B 16 316 50 HOH HOH . 
K 4 HOH B 17 317 34 HOH HOH . 
K 4 HOH B 18 318 29 HOH HOH . 
K 4 HOH B 19 319 42 HOH HOH . 
K 4 HOH B 20 320 46 HOH HOH . 
K 4 HOH B 21 321 44 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . F 2 -75.693 -42.279 -24.366 1 42.69 ? FE HEC 201 B 1 
HETATM 2 C CHA HEC . . . F 2 -74.608 -45.136 -25.822 1 41.81 ? CHA HEC 201 B 1 
HETATM 3 C CHB HEC . . . F 2 -72.467 -41.45 -23.604 1 37.54 ? CHB HEC 201 B 1 
HETATM 4 C CHC HEC . . . F 2 -76.792 -39.297 -22.906 1 43.15 ? CHC HEC 201 B 1 
HETATM 5 C CHD HEC . . . F 2 -78.989 -43.158 -24.858 1 43.2 ? CHD HEC 201 B 1 
HETATM 6 N NA HEC . . . F 2 -73.869 -43.127 -24.671 1 41.47 ? NA HEC 201 B 1 
HETATM 7 C C1A HEC . . . F 2 -73.653 -44.338 -25.269 1 39.73 ? C1A HEC 201 B 1 
HETATM 8 C C2A HEC . . . F 2 -72.237 -44.64 -25.228 1 40.38 ? C2A HEC 201 B 1 
HETATM 9 C C3A HEC . . . F 2 -71.636 -43.623 -24.613 1 41.65 ? C3A HEC 201 B 1 
HETATM 10 C C4A HEC . . . F 2 -72.652 -42.645 -24.245 1 40.03 ? C4A HEC 201 B 1 
HETATM 11 C CMA HEC . . . F 2 -70.122 -43.511 -24.333 1 42.72 ? CMA HEC 201 B 1 
HETATM 12 C CAA HEC . . . F 2 -71.577 -45.929 -25.779 1 38.27 ? CAA HEC 201 B 1 
HETATM 13 C CBA HEC . . . F 2 -71.288 -46.83 -24.59 1 36.8 ? CBA HEC 201 B 1 
HETATM 14 C CGA HEC . . . F 2 -70.378 -48.003 -24.908 1 42.77 ? CGA HEC 201 B 1 
HETATM 15 O O1A HEC . . . F 2 -70.118 -48.784 -23.962 1 41.96 ? O1A HEC 201 B 1 
HETATM 16 O O2A HEC . . . F 2 -69.932 -48.17 -26.064 1 41.25 ? O2A HEC 201 B 1 
HETATM 17 N NB HEC . . . F 2 -74.826 -40.718 -23.441 1 39.84 ? NB HEC 201 B 1 
HETATM 18 C C1B HEC . . . F 2 -73.466 -40.564 -23.261 1 42.41 ? C1B HEC 201 B 1 
HETATM 19 C C2B HEC . . . F 2 -73.242 -39.253 -22.694 1 41.07 ? C2B HEC 201 B 1 
HETATM 20 C C3B HEC . . . F 2 -74.427 -38.673 -22.486 1 42 ? C3B HEC 201 B 1 
HETATM 21 C C4B HEC . . . F 2 -75.443 -39.56 -22.975 1 44.24 ? C4B HEC 201 B 1 
HETATM 22 C CMB HEC . . . F 2 -71.833 -38.749 -22.308 1 43.02 ? CMB HEC 201 B 1 
HETATM 23 C CAB HEC . . . F 2 -74.742 -37.293 -21.872 1 45.96 ? CAB HEC 201 B 1 
HETATM 24 C CBB HEC . . . F 2 -73.964 -36.193 -22.615 1 38.59 ? CBB HEC 201 B 1 
HETATM 25 N NC HEC . . . F 2 -77.565 -41.389 -23.939 1 40.21 ? NC HEC 201 B 1 
HETATM 26 C C1C HEC . . . F 2 -77.771 -40.162 -23.344 1 43.14 ? C1C HEC 201 B 1 
HETATM 27 C C2C HEC . . . F 2 -79.179 -39.852 -23.423 1 43.44 ? C2C HEC 201 B 1 
HETATM 28 C C3C HEC . . . F 2 -79.806 -40.976 -23.801 1 44.9 ? C3C HEC 201 B 1 
HETATM 29 C C4C HEC . . . F 2 -78.791 -41.934 -24.234 1 40.59 ? C4C HEC 201 B 1 
HETATM 30 C CMC HEC . . . F 2 -79.792 -38.679 -22.637 1 38.06 ? CMC HEC 201 B 1 
HETATM 31 C CAC HEC . . . F 2 -81.35 -41.181 -23.872 1 48.35 ? CAC HEC 201 B 1 
HETATM 32 C CBC HEC . . . F 2 -82.021 -40.177 -24.827 1 48.59 ? CBC HEC 201 B 1 
HETATM 33 N ND HEC . . . F 2 -76.647 -43.874 -25.206 1 39.01 ? ND HEC 201 B 1 
HETATM 34 C C1D HEC . . . F 2 -78.022 -44.037 -25.331 1 42.27 ? C1D HEC 201 B 1 
HETATM 35 C C2D HEC . . . F 2 -78.266 -45.287 -26.044 1 43.04 ? C2D HEC 201 B 1 
HETATM 36 C C3D HEC . . . F 2 -76.894 -45.88 -26.327 1 38.75 ? C3D HEC 201 B 1 
HETATM 37 C C4D HEC . . . F 2 -75.963 -44.94 -25.774 1 43.18 ? C4D HEC 201 B 1 
HETATM 38 C CMD HEC . . . F 2 -79.613 -45.917 -26.46 1 40.36 ? CMD HEC 201 B 1 
HETATM 39 C CAD HEC . . . F 2 -76.533 -47.198 -27.048 1 44.75 ? CAD HEC 201 B 1 
HETATM 40 C CBD HEC . . . F 2 -76.546 -47.072 -28.574 1 42.22 ? CBD HEC 201 B 1 
HETATM 41 C CGD HEC . . . F 2 -76.416 -48.471 -29.127 1 47.61 ? CGD HEC 201 B 1 
HETATM 42 O O1D HEC . . . F 2 -75.289 -48.885 -29.536 1 48.83 ? O1D HEC 201 B 1 
HETATM 43 O O2D HEC . . . F 2 -77.451 -49.181 -29.149 1 46.07 ? O2D HEC 201 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#