data_8UFD
#
_model_server_result.job_id            EbhsRsldBoWDiLlEHWIGoA 
_model_server_result.datetime_utc      '2024-10-10 07:25:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ufd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    8UFD 
#
_exptl.entry_id    8UFD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              734.039 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHOSPHATIDYLETHANOLAMINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8UFD 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UFD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 F N N 
? 2 G N N 
#
_chem_comp.formula           'C40 H80 N O8 P' 
_chem_comp.formula_weight    734.039 
_chem_comp.id                PTY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHOSPHATIDYLETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O4 PTY sing 275 n n 
C1 C6 PTY sing 276 n n 
C1 HC11 PTY sing 277 n n 
C1 HC12 PTY sing 278 n n 
C2 C3 PTY sing 279 n n 
C2 N1 PTY sing 280 n n 
C2 HC21 PTY sing 281 n n 
C2 HC22 PTY sing 282 n n 
C3 O11 PTY sing 283 n n 
C3 HC31 PTY sing 284 n n 
C3 HC32 PTY sing 285 n n 
O4 C30 PTY sing 286 n n 
C5 C6 PTY sing 287 n n 
C5 O14 PTY sing 288 n n 
C5 HC51 PTY sing 289 n n 
C5 HC52 PTY sing 290 n n 
C6 O7 PTY sing 291 n n 
C6 HC6 PTY sing 292 n n 
O7 C8 PTY sing 293 n n 
C8 O10 PTY doub 294 n n 
C8 C11 PTY sing 295 n n 
C11 C12 PTY sing 296 n n 
C11 H111 PTY sing 297 n n 
C11 H112 PTY sing 298 n n 
C12 C13 PTY sing 299 n n 
C12 H121 PTY sing 300 n n 
C12 H122 PTY sing 301 n n 
C13 C14 PTY sing 302 n n 
C13 H131 PTY sing 303 n n 
C13 H132 PTY sing 304 n n 
C14 C15 PTY sing 305 n n 
C14 H141 PTY sing 306 n n 
C14 H142 PTY sing 307 n n 
C15 C16 PTY sing 308 n n 
C15 H151 PTY sing 309 n n 
C15 H152 PTY sing 310 n n 
C16 C17 PTY sing 311 n n 
C16 H161 PTY sing 312 n n 
C16 H162 PTY sing 313 n n 
C17 C18 PTY sing 314 n n 
C17 H171 PTY sing 315 n n 
C17 H172 PTY sing 316 n n 
C18 C19 PTY sing 317 n n 
C18 H181 PTY sing 318 n n 
C18 H182 PTY sing 319 n n 
C19 C20 PTY sing 320 n n 
C19 H191 PTY sing 321 n n 
C19 H192 PTY sing 322 n n 
C20 C21 PTY sing 323 n n 
C20 H201 PTY sing 324 n n 
C20 H202 PTY sing 325 n n 
C21 C22 PTY sing 326 n n 
C21 H211 PTY sing 327 n n 
C21 H212 PTY sing 328 n n 
C22 C23 PTY sing 329 n n 
C22 H221 PTY sing 330 n n 
C22 H222 PTY sing 331 n n 
C23 C24 PTY sing 332 n n 
C23 H231 PTY sing 333 n n 
C23 H232 PTY sing 334 n n 
C24 C25 PTY sing 335 n n 
C24 H241 PTY sing 336 n n 
C24 H242 PTY sing 337 n n 
C25 C26 PTY sing 338 n n 
C25 H251 PTY sing 339 n n 
C25 H252 PTY sing 340 n n 
C26 C27 PTY sing 341 n n 
C26 H261 PTY sing 342 n n 
C26 H262 PTY sing 343 n n 
C27 C28 PTY sing 344 n n 
C27 H271 PTY sing 345 n n 
C27 H272 PTY sing 346 n n 
C28 C29 PTY sing 347 n n 
C28 H281 PTY sing 348 n n 
C28 H282 PTY sing 349 n n 
C29 H291 PTY sing 350 n n 
C29 H292 PTY sing 351 n n 
C29 H293 PTY sing 352 n n 
C30 C31 PTY sing 353 n n 
C30 O30 PTY doub 354 n n 
C31 C32 PTY sing 355 n n 
C31 H311 PTY sing 356 n n 
C31 H312 PTY sing 357 n n 
C32 C33 PTY sing 358 n n 
C32 H321 PTY sing 359 n n 
C32 H322 PTY sing 360 n n 
C33 C34 PTY sing 361 n n 
C33 H331 PTY sing 362 n n 
C33 H332 PTY sing 363 n n 
C34 C35 PTY sing 364 n n 
C34 H341 PTY sing 365 n n 
C34 H342 PTY sing 366 n n 
C35 C36 PTY sing 367 n n 
C35 H351 PTY sing 368 n n 
C35 H352 PTY sing 369 n n 
C36 C37 PTY sing 370 n n 
C36 H361 PTY sing 371 n n 
C36 H362 PTY sing 372 n n 
C37 C38 PTY sing 373 n n 
C37 H371 PTY sing 374 n n 
C37 H372 PTY sing 375 n n 
C38 C39 PTY sing 376 n n 
C38 H381 PTY sing 377 n n 
C38 H382 PTY sing 378 n n 
C39 C40 PTY sing 379 n n 
C39 H391 PTY sing 380 n n 
C39 H392 PTY sing 381 n n 
C40 C41 PTY sing 382 n n 
C40 H401 PTY sing 383 n n 
C40 H402 PTY sing 384 n n 
C41 C42 PTY sing 385 n n 
C41 H411 PTY sing 386 n n 
C41 H412 PTY sing 387 n n 
C42 C43 PTY sing 388 n n 
C42 H421 PTY sing 389 n n 
C42 H422 PTY sing 390 n n 
C43 C44 PTY sing 391 n n 
C43 H431 PTY sing 392 n n 
C43 H432 PTY sing 393 n n 
C44 H441 PTY sing 394 n n 
C44 H442 PTY sing 395 n n 
C44 H443 PTY sing 396 n n 
P1 O11 PTY sing 397 n n 
P1 O12 PTY sing 398 n n 
P1 O13 PTY doub 399 n n 
P1 O14 PTY sing 400 n n 
O12 H12O PTY sing 401 n n 
N1 HN11 PTY sing 402 n n 
N1 HN12 PTY sing 403 n n 
#
_atom_sites.entry_id                     8UFD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PTY A 1 601 601 PTY PTY . 
D 2 PTY A 1 602 701 PTY PTY . 
E 3 WJI A 1 603 702 WJI LIG . 
F 2 PTY B 1 601 601 PTY PTY . 
G 2 PTY B 1 602 701 PTY PTY . 
H 3 WJI B 1 603 702 WJI LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PTY . . . D 2 107.152 116.395 134.554 1 72.88 ? C1 PTY 602 A 1 
HETATM 2 C C2 PTY . . . D 2 104.979 112.454 129.56 1 72.88 ? C2 PTY 602 A 1 
HETATM 3 C C3 PTY . . . D 2 104.45 113.894 129.478 1 72.88 ? C3 PTY 602 A 1 
HETATM 4 O O4 PTY . . . D 2 107.937 115.341 134 1 72.88 ? O4 PTY 602 A 1 
HETATM 5 C C5 PTY . . . D 2 106.396 116.67 132.162 1 72.88 ? C5 PTY 602 A 1 
HETATM 6 C C6 PTY . . . D 2 105.99 116.783 133.624 1 72.88 ? C6 PTY 602 A 1 
HETATM 7 O O7 PTY . . . D 2 105.56 118.088 133.951 1 72.88 ? O7 PTY 602 A 1 
HETATM 8 C C8 PTY . . . D 2 106.224 119.193 133.32 1 72.88 ? C8 PTY 602 A 1 
HETATM 9 O O10 PTY . . . D 2 107.37 119.379 133.48 1 72.88 ? O10 PTY 602 A 1 
HETATM 10 C C11 PTY . . . D 2 105.406 120.161 132.435 1 72.88 ? C11 PTY 602 A 1 
HETATM 11 C C12 PTY . . . D 2 106.152 121.516 132.298 1 72.88 ? C12 PTY 602 A 1 
HETATM 12 C C13 PTY . . . D 2 105.451 122.371 131.212 1 72.88 ? C13 PTY 602 A 1 
HETATM 13 C C14 PTY . . . D 2 104.185 123.047 131.825 1 72.88 ? C14 PTY 602 A 1 
HETATM 14 C C15 PTY . . . D 2 103.139 123.325 130.695 1 72.88 ? C15 PTY 602 A 1 
HETATM 15 C C16 PTY . . . D 2 102.598 124.778 130.839 1 72.88 ? C16 PTY 602 A 1 
HETATM 16 C C17 PTY . . . D 2 101.795 125.163 129.558 1 72.88 ? C17 PTY 602 A 1 
HETATM 17 C C18 PTY . . . D 2 102.401 126.444 128.946 1 72.88 ? C18 PTY 602 A 1 
HETATM 18 C C19 PTY . . . D 2 103.473 126.056 127.894 1 72.88 ? C19 PTY 602 A 1 
HETATM 19 C C20 PTY . . . D 2 104.284 127.325 127.492 1 72.88 ? C20 PTY 602 A 1 
HETATM 20 C C21 PTY . . . D 2 105.685 127.287 128.158 1 72.88 ? C21 PTY 602 A 1 
HETATM 21 C C22 PTY . . . D 2 106.359 125.918 127.884 1 72.88 ? C22 PTY 602 A 1 
HETATM 22 C C23 PTY . . . D 2 107.587 125.754 128.818 1 72.88 ? C23 PTY 602 A 1 
HETATM 23 C C24 PTY . . . D 2 107.802 124.248 129.129 1 72.88 ? C24 PTY 602 A 1 
HETATM 24 C C30 PTY . . . D 2 108.21 114.27 134.918 1 72.88 ? C30 PTY 602 A 1 
HETATM 25 C C31 PTY . . . D 2 109.672 113.92 135.324 1 72.88 ? C31 PTY 602 A 1 
HETATM 26 O O30 PTY . . . D 2 107.31 113.646 135.371 1 72.88 ? O30 PTY 602 A 1 
HETATM 27 C C32 PTY . . . D 2 110.683 114.713 134.432 1 72.88 ? C32 PTY 602 A 1 
HETATM 28 C C33 PTY . . . D 2 112.139 114.217 134.686 1 72.88 ? C33 PTY 602 A 1 
HETATM 29 C C34 PTY . . . D 2 113.146 115.248 134.085 1 72.88 ? C34 PTY 602 A 1 
HETATM 30 C C35 PTY . . . D 2 114.27 115.511 135.105 1 72.88 ? C35 PTY 602 A 1 
HETATM 31 C C36 PTY . . . D 2 115.543 116.038 134.376 1 72.88 ? C36 PTY 602 A 1 
HETATM 32 C C37 PTY . . . D 2 116.794 115.648 135.208 1 72.88 ? C37 PTY 602 A 1 
HETATM 33 C C38 PTY . . . D 2 118.072 115.833 134.363 1 72.88 ? C38 PTY 602 A 1 
HETATM 34 C C39 PTY . . . D 2 118.561 114.461 133.827 1 72.88 ? C39 PTY 602 A 1 
HETATM 35 C C40 PTY . . . D 2 118.637 113.435 134.986 1 72.88 ? C40 PTY 602 A 1 
HETATM 36 C C41 PTY . . . D 2 119.731 112.367 134.705 1 72.88 ? C41 PTY 602 A 1 
HETATM 37 C C42 PTY . . . D 2 119.781 112.037 133.181 1 72.88 ? C42 PTY 602 A 1 
HETATM 38 C C43 PTY . . . D 2 119.858 110.507 132.935 1 72.88 ? C43 PTY 602 A 1 
HETATM 39 C C44 PTY . . . D 2 119.828 110.197 131.432 1 72.88 ? C44 PTY 602 A 1 
HETATM 40 P P1 PTY . . . D 2 105.135 116.432 129.829 1 72.88 ? P1 PTY 602 A 1 
HETATM 41 O O11 PTY . . . D 2 105.458 114.797 129.9 1 72.88 ? O11 PTY 602 A 1 
HETATM 42 O O12 PTY . . . D 2 106.082 117.092 128.848 1 72.88 ? O12 PTY 602 A 1 
HETATM 43 O O13 PTY . . . D 2 103.706 116.643 129.373 1 72.88 ? O13 PTY 602 A 1 
HETATM 44 O O14 PTY . . . D 2 105.336 117.113 131.34 1 72.88 ? O14 PTY 602 A 1 
HETATM 45 N N1 PTY . . . D 2 103.995 111.541 128.999 1 72.88 ? N1 PTY 602 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           45 
#