data_8UFH # _model_server_result.job_id mSkA4CfXxIJIYeOSRYqcXg _model_server_result.datetime_utc '2025-03-12 20:09:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ufh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 8UFH # _exptl.entry_id 8UFH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 797.411 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (7S,10S,13S,17P)-10-(4-aminobutyl)-7-(3-aminopropyl)-17-(6-aminopyridin-3-yl)-20-chloro-13-[(1H-indol-3-yl)methyl]-12-methyl-6,7,9,10,12,13,15,16-octahydropyrido[2,3-b][1,5,8,11,14]benzothiatetraazacycloheptadecine-8,11,14(5H)-trione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UFH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C41 H49 Cl N10 O3 S' _chem_comp.formula_weight 797.411 _chem_comp.id Y75 _chem_comp.mon_nstd_flag . _chem_comp.name (7S,10S,13S,17P)-10-(4-aminobutyl)-7-(3-aminopropyl)-17-(6-aminopyridin-3-yl)-20-chloro-13-[(1H-indol-3-yl)methyl]-12-methyl-6,7,9,10,12,13,15,16-octahydropyrido[2,3-b][1,5,8,11,14]benzothiatetraazacycloheptadecine-8,11,14(5H)-trione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N35 C34 Y75 sing 751 n n C34 C33 Y75 sing 752 n n C33 C32 Y75 sing 753 n n O01 C02 Y75 doub 754 n n C32 C06 Y75 sing 755 n n C06 C05 Y75 sing 756 n n C06 N07 Y75 sing 757 n n C02 C03 Y75 sing 758 n n C02 N42 Y75 sing 759 n n C43 N42 Y75 sing 760 n n N04 C05 Y75 sing 761 n n N04 C03 Y75 sing 762 n n C05 O36 Y75 doub 763 n n C37 C38 Y75 sing 764 n n C37 C03 Y75 sing 765 n n C38 C39 Y75 sing 766 n n N42 C44 Y75 sing 767 n n C40 C39 Y75 sing 768 n n C40 N41 Y75 sing 769 n n N07 C08 Y75 sing 770 n n C47 N48 Y75 sing 771 n y C47 C46 Y75 doub 772 n y N48 C49 Y75 sing 773 n y C44 C45 Y75 sing 774 n n C44 C55 Y75 sing 775 n n C08 C09 Y75 sing 776 n n C46 C45 Y75 sing 777 n n C46 C50 Y75 sing 778 n y C49 C50 Y75 doub 779 n y C49 C54 Y75 sing 780 n y C55 N27 Y75 sing 781 n n C55 O56 Y75 doub 782 n n C31 C09 Y75 doub 783 n y C31 C30 Y75 sing 784 n y N27 C26 Y75 sing 785 n n C09 C10 Y75 sing 786 n y C50 C51 Y75 sing 787 n y C54 C53 Y75 doub 788 n y C26 C25 Y75 sing 789 n n C30 C29 Y75 doub 790 n y C10 S11 Y75 sing 791 n n C10 N28 Y75 doub 792 n y C51 C52 Y75 doub 793 n y C53 C52 Y75 sing 794 n y S11 C12 Y75 sing 795 n n C29 N28 Y75 sing 796 n y N23 C24 Y75 doub 797 n y N23 C21 Y75 sing 798 n y N22 C21 Y75 sing 799 n n C25 C12 Y75 doub 800 n y C25 C17 Y75 sing 801 n y C24 C18 Y75 sing 802 n y C21 C20 Y75 doub 803 n y C12 C13 Y75 sing 804 n y C18 C19 Y75 doub 805 n y C18 C17 Y75 sing 806 n n C20 C19 Y75 sing 807 n y C17 C16 Y75 doub 808 n y C13 CL14 Y75 sing 809 n n C13 C15 Y75 doub 810 n y C16 C15 Y75 sing 811 n y C03 H1 Y75 sing 812 n n C06 H2 Y75 sing 813 n n C08 H3 Y75 sing 814 n n C08 H4 Y75 sing 815 n n C15 H5 Y75 sing 816 n n C16 H6 Y75 sing 817 n n C19 H7 Y75 sing 818 n n C20 H8 Y75 sing 819 n n C24 H9 Y75 sing 820 n n C26 H10 Y75 sing 821 n n C26 H11 Y75 sing 822 n n C29 H12 Y75 sing 823 n n C30 H13 Y75 sing 824 n n C31 H14 Y75 sing 825 n n C32 H15 Y75 sing 826 n n C32 H16 Y75 sing 827 n n C33 H17 Y75 sing 828 n n C33 H18 Y75 sing 829 n n C34 H19 Y75 sing 830 n n C34 H20 Y75 sing 831 n n C37 H21 Y75 sing 832 n n C37 H22 Y75 sing 833 n n C38 H23 Y75 sing 834 n n C38 H24 Y75 sing 835 n n C39 H25 Y75 sing 836 n n C39 H26 Y75 sing 837 n n C40 H27 Y75 sing 838 n n C40 H28 Y75 sing 839 n n C43 H29 Y75 sing 840 n n C43 H30 Y75 sing 841 n n C43 H31 Y75 sing 842 n n C44 H32 Y75 sing 843 n n C45 H33 Y75 sing 844 n n C45 H34 Y75 sing 845 n n C47 H35 Y75 sing 846 n n C51 H36 Y75 sing 847 n n C52 H37 Y75 sing 848 n n C53 H38 Y75 sing 849 n n C54 H39 Y75 sing 850 n n N04 H40 Y75 sing 851 n n N07 H41 Y75 sing 852 n n N22 H43 Y75 sing 853 n n N22 H44 Y75 sing 854 n n N27 H45 Y75 sing 855 n n N35 H46 Y75 sing 856 n n N35 H47 Y75 sing 857 n n N41 H49 Y75 sing 858 n n N41 H50 Y75 sing 859 n n N48 H52 Y75 sing 860 n n # _atom_sites.entry_id 8UFH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 WJW F 1 401 1 WJW JSG . F 5 Y75 F 1 402 1 Y75 KP4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 Y75 . . . F 5 120.321 95.364 104.092 1 40.69 ? C02 Y75 402 F 1 HETATM 2 C C03 Y75 . . . F 5 119.557 96.683 104.223 1 40.69 ? C03 Y75 402 F 1 HETATM 3 C C05 Y75 . . . F 5 120.527 98.658 103.17 1 40.69 ? C05 Y75 402 F 1 HETATM 4 C C06 Y75 . . . F 5 119.708 99.902 102.897 1 40.69 ? C06 Y75 402 F 1 HETATM 5 C C08 Y75 . . . F 5 120.543 100.791 105.132 1 40.69 ? C08 Y75 402 F 1 HETATM 6 C C09 Y75 . . . F 5 120.269 99.863 106.279 1 40.69 ? C09 Y75 402 F 1 HETATM 7 C C10 Y75 . . . F 5 121.289 99.371 107.074 1 40.69 ? C10 Y75 402 F 1 HETATM 8 C C12 Y75 . . . F 5 123.991 99.213 107.781 1 40.69 ? C12 Y75 402 F 1 HETATM 9 C C13 Y75 . . . F 5 124.046 99.554 109.121 1 40.69 ? C13 Y75 402 F 1 HETATM 10 C C15 Y75 . . . F 5 124.996 99.031 109.947 1 40.69 ? C15 Y75 402 F 1 HETATM 11 C C16 Y75 . . . F 5 125.915 98.14 109.445 1 40.69 ? C16 Y75 402 F 1 HETATM 12 C C17 Y75 . . . F 5 125.886 97.778 108.103 1 40.69 ? C17 Y75 402 F 1 HETATM 13 C C18 Y75 . . . F 5 126.959 96.865 107.636 1 40.69 ? C18 Y75 402 F 1 HETATM 14 C C19 Y75 . . . F 5 126.917 95.508 107.899 1 40.69 ? C19 Y75 402 F 1 HETATM 15 C C20 Y75 . . . F 5 127.992 94.7 107.596 1 40.69 ? C20 Y75 402 F 1 HETATM 16 C C21 Y75 . . . F 5 129.123 95.277 107.02 1 40.69 ? C21 Y75 402 F 1 HETATM 17 C C24 Y75 . . . F 5 128.12 97.347 107.06 1 40.69 ? C24 Y75 402 F 1 HETATM 18 C C25 Y75 . . . F 5 124.906 98.303 107.23 1 40.69 ? C25 Y75 402 F 1 HETATM 19 C C26 Y75 . . . F 5 124.826 97.927 105.768 1 40.69 ? C26 Y75 402 F 1 HETATM 20 C C29 Y75 . . . F 5 119.866 98.025 108.241 1 40.69 ? C29 Y75 402 F 1 HETATM 21 C C30 Y75 . . . F 5 118.788 98.441 107.516 1 40.69 ? C30 Y75 402 F 1 HETATM 22 C C31 Y75 . . . F 5 118.993 99.375 106.521 1 40.69 ? C31 Y75 402 F 1 HETATM 23 C C32 Y75 . . . F 5 120.523 100.582 101.797 1 40.69 ? C32 Y75 402 F 1 HETATM 24 C C33 Y75 . . . F 5 120.778 99.7 100.582 1 40.69 ? C33 Y75 402 F 1 HETATM 25 C C34 Y75 . . . F 5 119.601 98.804 100.297 1 40.69 ? C34 Y75 402 F 1 HETATM 26 C C37 Y75 . . . F 5 118.051 96.445 104.29 1 40.69 ? C37 Y75 402 F 1 HETATM 27 C C38 Y75 . . . F 5 117.562 95.776 105.556 1 40.69 ? C38 Y75 402 F 1 HETATM 28 C C39 Y75 . . . F 5 116.138 95.312 105.434 1 40.69 ? C39 Y75 402 F 1 HETATM 29 C C40 Y75 . . . F 5 115.984 94.503 104.18 1 40.69 ? C40 Y75 402 F 1 HETATM 30 C C43 Y75 . . . F 5 122.64 95.114 103.399 1 40.69 ? C43 Y75 402 F 1 HETATM 31 C C44 Y75 . . . F 5 122.075 95.32 105.825 1 40.69 ? C44 Y75 402 F 1 HETATM 32 C C45 Y75 . . . F 5 122.172 93.938 106.481 1 40.69 ? C45 Y75 402 F 1 HETATM 33 C C46 Y75 . . . F 5 120.836 93.346 106.807 1 40.69 ? C46 Y75 402 F 1 HETATM 34 C C47 Y75 . . . F 5 120.224 92.309 106.172 1 40.69 ? C47 Y75 402 F 1 HETATM 35 C C49 Y75 . . . F 5 118.794 92.964 107.744 1 40.69 ? C49 Y75 402 F 1 HETATM 36 C C50 Y75 . . . F 5 119.93 93.783 107.827 1 40.69 ? C50 Y75 402 F 1 HETATM 37 C C51 Y75 . . . F 5 119.964 94.774 108.8 1 40.69 ? C51 Y75 402 F 1 HETATM 38 C C52 Y75 . . . F 5 118.888 94.933 109.657 1 40.69 ? C52 Y75 402 F 1 HETATM 39 C C53 Y75 . . . F 5 117.776 94.115 109.557 1 40.69 ? C53 Y75 402 F 1 HETATM 40 C C54 Y75 . . . F 5 117.716 93.121 108.598 1 40.69 ? C54 Y75 402 F 1 HETATM 41 C C55 Y75 . . . F 5 123.459 95.929 105.951 1 40.69 ? C55 Y75 402 F 1 HETATM 42 N N04 Y75 . . . F 5 119.865 97.507 103.074 1 40.69 ? N04 Y75 402 F 1 HETATM 43 N N07 Y75 . . . F 5 119.44 100.713 104.124 1 40.69 ? N07 Y75 402 F 1 HETATM 44 N N22 Y75 . . . F 5 130.207 94.547 106.737 1 40.69 ? N22 Y75 402 F 1 HETATM 45 N N23 Y75 . . . F 5 129.177 96.591 106.757 1 40.69 ? N23 Y75 402 F 1 HETATM 46 N N27 Y75 . . . F 5 123.593 97.188 105.562 1 40.69 ? N27 Y75 402 F 1 HETATM 47 N N28 Y75 . . . F 5 121.111 98.472 108.039 1 40.69 ? N28 Y75 402 F 1 HETATM 48 N N35 Y75 . . . F 5 119.903 97.823 99.227 1 40.69 ? N35 Y75 402 F 1 HETATM 49 N N41 Y75 . . . F 5 114.572 94.157 103.897 1 40.69 ? N41 Y75 402 F 1 HETATM 50 N N42 Y75 . . . F 5 121.625 95.277 104.43 1 40.69 ? N42 Y75 402 F 1 HETATM 51 N N48 Y75 . . . F 5 119.002 92.073 106.725 1 40.69 ? N48 Y75 402 F 1 HETATM 52 O O01 Y75 . . . F 5 119.729 94.415 103.631 1 40.69 ? O01 Y75 402 F 1 HETATM 53 O O36 Y75 . . . F 5 121.718 98.732 103.41 1 40.69 ? O36 Y75 402 F 1 HETATM 54 O O56 Y75 . . . F 5 124.38 95.275 106.408 1 40.69 ? O56 Y75 402 F 1 HETATM 55 S S11 Y75 . . . F 5 122.877 100.03 106.71 1 40.69 ? S11 Y75 402 F 1 HETATM 56 CL CL14 Y75 . . . F 5 122.904 100.677 109.755 1 40.69 ? CL14 Y75 402 F 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 56 #