data_8UGB # _model_server_result.job_id F9KEZ1JLnlQM1FyNoLpW4g _model_server_result.datetime_utc '2024-10-11 03:23:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ugb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":901}' # _entry.id 8UGB # _exptl.entry_id 8UGB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 345.205 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UGB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 563 A HIS 563 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A NE2 HIS 599 A HIS 599 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc3 A OD2 ASP 600 A ASP 600 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc4 A OD1 ASP 600 A ASP 600 1_555 G MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? metalc ? metalc5 A OD2 ASP 600 A ASP 600 1_555 G MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc6 A OD1 ASP 720 A ASP 720 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc7 B NE2 HIS 561 B HIS 561 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 B NE2 HIS 597 B HIS 597 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc9 B OD2 ASP 598 B ASP 598 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc10 B OD1 ASP 598 B ASP 598 1_555 K MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc11 B OD1 ASP 718 B ASP 718 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 235 n n PA O2A PCG doub 236 n n PA O5' PCG sing 237 n n PA O3' PCG sing 238 n n O1A HO1A PCG sing 239 n n O5' C5' PCG sing 240 n n C5' C4' PCG sing 241 n n C5' "H5'1" PCG sing 242 n n C5' "H5'2" PCG sing 243 n n C4' O4' PCG sing 244 n n C4' C3' PCG sing 245 n n C4' H4' PCG sing 246 n n O4' C1' PCG sing 247 n n C3' O3' PCG sing 248 n n C3' C2' PCG sing 249 n n C3' H3' PCG sing 250 n n C2' O2' PCG sing 251 n n C2' C1' PCG sing 252 n n C2' H2' PCG sing 253 n n O2' HO2' PCG sing 254 n n C1' N9 PCG sing 255 n n C1' H1' PCG sing 256 n n N9 C8 PCG sing 257 n y N9 C4 PCG sing 258 n y C8 N7 PCG doub 259 n y C8 H8 PCG sing 260 n n N7 C5 PCG sing 261 n y C5 C6 PCG sing 262 n n C5 C4 PCG doub 263 n y C6 O6 PCG doub 264 n n C6 N1 PCG sing 265 n n N1 C2 PCG sing 266 n n N1 HN1 PCG sing 267 n n C2 N2 PCG sing 268 n n C2 N3 PCG doub 269 n n N2 HN21 PCG sing 270 n n N2 HN22 PCG sing 271 n n N3 C4 PCG sing 272 n n # _atom_sites.entry_id 8UGB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 PCG A 1 901 901 PCG PCG . F 5 ZN A 1 902 902 ZN ZN . G 6 MG A 1 903 903 MG MG . H 7 ZUD A 1 904 904 ZUD UDN . I 4 PCG B 1 901 901 PCG PCG . J 5 ZN B 1 902 902 ZN ZN . K 6 MG B 1 903 903 MG MG . L 7 ZUD B 1 904 904 ZUD UDN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . I 4 158.095 193.654 116.242 1 128.92 ? PA PCG 901 B 1 HETATM 2 O O1A PCG . . . I 4 157.518 195.128 116.765 1 124.81 ? O1A PCG 901 B 1 HETATM 3 O O2A PCG . . . I 4 157.147 192.588 116.591 1 122.03 ? O2A PCG 901 B 1 HETATM 4 O O5' PCG . . . I 4 159.476 193.347 116.934 1 122.99 ? O5' PCG 901 B 1 HETATM 5 C C5' PCG . . . I 4 160.504 194.308 116.641 1 120.63 ? C5' PCG 901 B 1 HETATM 6 C C4' PCG . . . I 4 160.399 194.779 115.148 1 119.66 ? C4' PCG 901 B 1 HETATM 7 O O4' PCG . . . I 4 161.84 194.792 114.636 1 121.36 ? O4' PCG 901 B 1 HETATM 8 C C3' PCG . . . I 4 159.82 193.79 114.404 1 118.25 ? C3' PCG 901 B 1 HETATM 9 O O3' PCG . . . I 4 158.287 193.673 114.747 1 124.26 ? O3' PCG 901 B 1 HETATM 10 C C2' PCG . . . I 4 160.296 194.116 113.005 1 119.79 ? C2' PCG 901 B 1 HETATM 11 O O2' PCG . . . I 4 159.515 195.096 112.455 1 119.12 ? O2' PCG 901 B 1 HETATM 12 C C1' PCG . . . I 4 161.724 194.637 113.258 1 123.22 ? C1' PCG 901 B 1 HETATM 13 N N9 PCG . . . I 4 162.665 193.675 112.817 1 122.8 ? N9 PCG 901 B 1 HETATM 14 C C8 PCG . . . I 4 162.456 192.379 112.76 1 120.09 ? C8 PCG 901 B 1 HETATM 15 N N7 PCG . . . I 4 163.553 191.782 112.3 1 120.03 ? N7 PCG 901 B 1 HETATM 16 C C5 PCG . . . I 4 164.511 192.744 112.051 1 118.14 ? C5 PCG 901 B 1 HETATM 17 C C6 PCG . . . I 4 165.845 192.706 111.561 1 117.4 ? C6 PCG 901 B 1 HETATM 18 O O6 PCG . . . I 4 166.433 191.493 111.224 1 119.49 ? O6 PCG 901 B 1 HETATM 19 N N1 PCG . . . I 4 166.52 193.878 111.436 1 116.56 ? N1 PCG 901 B 1 HETATM 20 C C2 PCG . . . I 4 165.95 195.026 111.759 1 118.48 ? C2 PCG 901 B 1 HETATM 21 N N2 PCG . . . I 4 166.72 196.265 111.607 1 122.59 ? N2 PCG 901 B 1 HETATM 22 N N3 PCG . . . I 4 164.715 195.097 112.218 1 116.35 ? N3 PCG 901 B 1 HETATM 23 C C4 PCG . . . I 4 163.959 193.935 112.375 1 119.29 ? C4 PCG 901 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #