data_8UGB
#
_model_server_result.job_id            eEHNlEUdy2pcm8hamptKqA 
_model_server_result.datetime_utc      '2024-10-11 03:24:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ugb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":904}' 
#
_entry.id    8UGB 
#
_exptl.entry_id    8UGB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              516.656 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Udenafil 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8UGB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UGB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 H N N 
? 7 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 563 A HIS 563 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc2 A NE2 HIS 599 A HIS 599 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc3 A OD2 ASP 600 A ASP 600 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc4 A OD1 ASP 600 A ASP 600 1_555 G MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? 
metalc ? metalc5 A OD2 ASP 600 A ASP 600 1_555 G MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? 
metalc ? metalc6 A OD1 ASP 720 A ASP 720 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc7 B NE2 HIS 561 B HIS 561 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc8 B NE2 HIS 597 B HIS 597 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc9 B OD2 ASP 598 B ASP 598 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc10 B OD1 ASP 598 B ASP 598 1_555 K MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc11 B OD1 ASP 718 B ASP 718 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
#
_chem_comp.formula           'C25 H36 N6 O4 S' 
_chem_comp.formula_weight    516.656 
_chem_comp.id                ZUD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Udenafil 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (3P)-3-(1-methyl-7-oxo-3-propyl-4,7-dihydro-1H-pyrazolo[4,3-d]pyrimidin-5-yl)-N-{2-[(2R)-1-methylpyrrolidin-2-yl]ethyl}-4-propoxybenzene-1-sulfonamide 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 ZUD sing 412 n n 
C10 C11 ZUD doub 413 n y 
C10 C9 ZUD sing 414 n y 
C10 O4 ZUD sing 415 n n 
C11 C12 ZUD sing 416 n y 
C12 C13 ZUD doub 417 n y 
C13 C14 ZUD sing 418 n y 
C13 S1 ZUD sing 419 n n 
C14 C9 ZUD doub 420 n y 
C15 C16 ZUD sing 421 n n 
C15 N5 ZUD sing 422 n n 
C16 C17 ZUD sing 423 n n 
C17 C18 ZUD sing 424 n n 
C17 N6 ZUD sing 425 n n 
C18 C19 ZUD sing 426 n n 
C19 C20 ZUD sing 427 n n 
C2 C3 ZUD sing 428 n n 
C20 N6 ZUD sing 429 n n 
C21 N6 ZUD sing 430 n n 
C22 C23 ZUD sing 431 n n 
C22 O4 ZUD sing 432 n n 
C23 C24 ZUD sing 433 n n 
C25 N2 ZUD sing 434 n n 
C3 C4 ZUD sing 435 n n 
C4 C6 ZUD sing 436 n y 
C4 N1 ZUD doub 437 n y 
C5 C6 ZUD doub 438 n y 
C5 C8 ZUD sing 439 n n 
C5 N2 ZUD sing 440 n y 
C6 N3 ZUD sing 441 n n 
C7 C9 ZUD sing 442 n n 
C7 N3 ZUD sing 443 n n 
C7 N4 ZUD doub 444 n n 
C8 N4 ZUD sing 445 n n 
C8 O1 ZUD doub 446 n n 
N1 N2 ZUD sing 447 n y 
N5 S1 ZUD sing 448 n n 
O2 S1 ZUD doub 449 n n 
O3 S1 ZUD doub 450 n n 
C2 H23 ZUD sing 451 n n 
C2 H22 ZUD sing 452 n n 
C1 H13 ZUD sing 453 n n 
C1 H11 ZUD sing 454 n n 
C1 H12 ZUD sing 455 n n 
C11 H111 ZUD sing 456 n n 
C12 H121 ZUD sing 457 n n 
C14 H141 ZUD sing 458 n n 
C15 H151 ZUD sing 459 n n 
C15 H152 ZUD sing 460 n n 
C16 H162 ZUD sing 461 n n 
C16 H161 ZUD sing 462 n n 
C17 H171 ZUD sing 463 n n 
C18 H181 ZUD sing 464 n n 
C18 H182 ZUD sing 465 n n 
C19 H192 ZUD sing 466 n n 
C19 H191 ZUD sing 467 n n 
C20 H202 ZUD sing 468 n n 
C20 H201 ZUD sing 469 n n 
C21 H212 ZUD sing 470 n n 
C21 H213 ZUD sing 471 n n 
C21 H211 ZUD sing 472 n n 
C22 H221 ZUD sing 473 n n 
C22 H222 ZUD sing 474 n n 
C23 H232 ZUD sing 475 n n 
C23 H231 ZUD sing 476 n n 
C24 H243 ZUD sing 477 n n 
C24 H242 ZUD sing 478 n n 
C24 H241 ZUD sing 479 n n 
C25 H253 ZUD sing 480 n n 
C25 H251 ZUD sing 481 n n 
C25 H252 ZUD sing 482 n n 
C3 H32 ZUD sing 483 n n 
C3 H31 ZUD sing 484 n n 
N5 H51 ZUD sing 485 n n 
N3 H2 ZUD sing 486 n n 
#
_atom_sites.entry_id                     8UGB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 PCG A 1 901 901 PCG PCG . 
F 5 ZN A 1 902 902 ZN ZN . 
G 6 MG A 1 903 903 MG MG . 
H 7 ZUD A 1 904 904 ZUD UDN . 
I 4 PCG B 1 901 901 PCG PCG . 
J 5 ZN B 1 902 902 ZN ZN . 
K 6 MG B 1 903 903 MG MG . 
L 7 ZUD B 1 904 904 ZUD UDN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 ZUD . . . L 7 159.847 143.669 200.039 1 93.78 ? N1 ZUD 904 B 1 
HETATM 2 C C2 ZUD . . . L 7 157.668 144.187 197.119 1 98.62 ? C2 ZUD 904 B 1 
HETATM 3 N N3 ZUD . . . L 7 156.702 142.097 199.512 1 102.6 ? N3 ZUD 904 B 1 
HETATM 4 C C4 ZUD . . . L 7 158.94 143.356 199.149 1 100.16 ? C4 ZUD 904 B 1 
HETATM 5 C C5 ZUD . . . L 7 158.287 142.628 201.183 1 97.27 ? C5 ZUD 904 B 1 
HETATM 6 C C6 ZUD . . . L 7 157.881 142.66 199.853 1 102.91 ? C6 ZUD 904 B 1 
HETATM 7 O O2 ZUD . . . L 7 153.871 137.252 196.919 1 103.76 ? O2 ZUD 904 B 1 
HETATM 8 O O4 ZUD . . . L 7 153.533 141.616 202.016 1 99.24 ? O4 ZUD 904 B 1 
HETATM 9 C C1 ZUD . . . L 7 157.85 145.158 195.954 1 94.88 ? C1 ZUD 904 B 1 
HETATM 10 C C10 ZUD . . . L 7 153.479 140.948 200.794 1 95.19 ? C10 ZUD 904 B 1 
HETATM 11 C C11 ZUD . . . L 7 152.288 140.367 200.4 1 95.6 ? C11 ZUD 904 B 1 
HETATM 12 C C12 ZUD . . . L 7 152.209 139.705 199.19 1 99.22 ? C12 ZUD 904 B 1 
HETATM 13 C C13 ZUD . . . L 7 153.324 139.626 198.376 1 97.08 ? C13 ZUD 904 B 1 
HETATM 14 C C14 ZUD . . . L 7 154.516 140.213 198.768 1 97.52 ? C14 ZUD 904 B 1 
HETATM 15 C C15 ZUD . . . L 7 153.179 140.657 195.049 1 97.23 ? C15 ZUD 904 B 1 
HETATM 16 C C16 ZUD . . . L 7 152.517 140.164 193.761 1 100.24 ? C16 ZUD 904 B 1 
HETATM 17 C C17 ZUD . . . L 7 151.01 140.634 193.636 1 104.66 ? C17 ZUD 904 B 1 
HETATM 18 C C18 ZUD . . . L 7 150.601 140.485 192.442 1 101.14 ? C18 ZUD 904 B 1 
HETATM 19 C C19 ZUD . . . L 7 149.94 139.159 192.429 1 99.38 ? C19 ZUD 904 B 1 
HETATM 20 C C20 ZUD . . . L 7 149.4 138.985 193.855 1 101.71 ? C20 ZUD 904 B 1 
HETATM 21 C C21 ZUD . . . L 7 149.309 140.453 195.166 1 95.92 ? C21 ZUD 904 B 1 
HETATM 22 C C22 ZUD . . . L 7 152.917 142.868 201.956 1 99.24 ? C22 ZUD 904 B 1 
HETATM 23 C C23 ZUD . . . L 7 152.569 143.297 203.374 1 95.2 ? C23 ZUD 904 B 1 
HETATM 24 C C24 ZUD . . . L 7 153.816 143.687 204.163 1 94.63 ? C24 ZUD 904 B 1 
HETATM 25 C C25 ZUD . . . L 7 160.278 143.446 202.445 1 94.43 ? C25 ZUD 904 B 1 
HETATM 26 C C3 ZUD . . . L 7 158.997 143.663 197.656 1 100.96 ? C3 ZUD 904 B 1 
HETATM 27 C C7 ZUD . . . L 7 155.919 141.515 200.414 1 97.03 ? C7 ZUD 904 B 1 
HETATM 28 C C8 ZUD . . . L 7 157.428 141.996 202.117 1 95.93 ? C8 ZUD 904 B 1 
HETATM 29 C C9 ZUD . . . L 7 154.596 140.881 199.98 1 97.12 ? C9 ZUD 904 B 1 
HETATM 30 N N2 ZUD . . . L 7 159.485 143.25 201.245 1 96.12 ? N2 ZUD 904 B 1 
HETATM 31 N N4 ZUD . . . L 7 156.283 141.464 201.7 1 93.87 ? N4 ZUD 904 B 1 
HETATM 32 N N5 ZUD . . . L 7 154.067 139.653 195.613 1 99.99 ? N5 ZUD 904 B 1 
HETATM 33 N N6 ZUD . . . L 7 150.052 139.753 194.574 1 104.41 ? N6 ZUD 904 B 1 
HETATM 34 O O1 ZUD . . . L 7 157.768 141.922 203.472 1 101.83 ? O1 ZUD 904 B 1 
HETATM 35 O O3 ZUD . . . L 7 151.634 138.613 196.354 1 101.02 ? O3 ZUD 904 B 1 
HETATM 36 S S1 ZUD . . . L 7 153.217 138.759 196.789 1 107.22 ? S1 ZUD 904 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           36 
#