data_8UGD # _model_server_result.job_id qwLhWPukK8itAM8xHTfgJQ _model_server_result.datetime_utc '2024-11-15 04:15:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ugd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AB","auth_seq_id":101}' # _entry.id 8UGD # _exptl.entry_id 8UGD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UGD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 17 JA N N ? 17 YA N N ? 17 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 222 3E CYS 222 1_555 E SG CYS 238 3E CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 H SG CYS 37 3H CYS 49 1_555 H SG CYS 81 3H CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 H SG CYS 53 3H CYS 65 1_555 H SG CYS 67 3H CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 O SG CYS 236 3R CYS 236 1_555 O SG CYS 238 3R CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? disulf ? disulf5 R SG CYS 37 3U CYS 24 1_555 R SG CYS 81 3U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 R SG CYS 53 3U CYS 40 1_555 R SG CYS 67 3U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 N SG CYS 122 3Q CYS 37 1_555 UA CAB HEC . 3Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc1 C NE2 HIS 83 3C HIS 83 1_555 Z FE HEM . 3C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc2 C NE2 HIS 182 3C HIS 182 1_555 Z FE HEM . 3C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc3 C NE2 HIS 196 3C HIS 196 1_555 AA FE HEM . 3C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 D NE2 HIS 126 3D HIS 129 1_555 FA FE HEC . 3D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc5 E SG CYS 217 3E CYS 217 1_555 IA FE1 FES . 3E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc6 E ND1 HIS 219 3E HIS 219 1_555 IA FE2 FES . 3E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc7 E SG CYS 236 3E CYS 236 1_555 IA FE1 FES . 3E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc8 E ND1 HIS 239 3E HIS 239 1_555 IA FE2 FES . 3E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc9 M NE2 HIS 83 3P HIS 83 1_555 NA FE HEM . 3P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc10 M NE2 HIS 97 3P HIS 97 1_555 OA FE HEM . 3P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc11 M NE2 HIS 196 3P HIS 196 1_555 OA FE HEM . 3P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc12 N NE2 HIS 126 3Q HIS 41 1_555 UA FE HEC . 3Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc13 O SG CYS 217 3R CYS 217 1_555 XA FE1 FES . 3R FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc14 O ND1 HIS 219 3R HIS 219 1_555 XA FE2 FES . 3R FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc15 O SG CYS 236 3R CYS 236 1_555 XA FE1 FES . 3R FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc16 O SG CYS 238 3R CYS 238 1_555 XA FE1 FES . 3R FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc17 O ND1 HIS 239 3R HIS 239 1_555 XA FE2 FES . 3R FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 792 n n P O14 PC1 doub 793 n n P O13 PC1 sing 794 n n P O11 PC1 sing 795 n n O13 C11 PC1 sing 796 n n C11 C12 PC1 sing 797 n n C11 H111 PC1 sing 798 n n C11 H112 PC1 sing 799 n n C12 N PC1 sing 800 n n C12 H121 PC1 sing 801 n n C12 H122 PC1 sing 802 n n N C13 PC1 sing 803 n n N C14 PC1 sing 804 n n N C15 PC1 sing 805 n n C13 H131 PC1 sing 806 n n C13 H132 PC1 sing 807 n n C13 H133 PC1 sing 808 n n C14 H141 PC1 sing 809 n n C14 H142 PC1 sing 810 n n C14 H143 PC1 sing 811 n n C15 H151 PC1 sing 812 n n C15 H152 PC1 sing 813 n n C15 H153 PC1 sing 814 n n O11 C1 PC1 sing 815 n n C1 C2 PC1 sing 816 n n C1 H11 PC1 sing 817 n n C1 H12 PC1 sing 818 n n C2 O21 PC1 sing 819 n n C2 C3 PC1 sing 820 n n C2 H2 PC1 sing 821 n n O21 C21 PC1 sing 822 n n C21 O22 PC1 doub 823 n n C21 C22 PC1 sing 824 n n C22 C23 PC1 sing 825 n n C22 H221 PC1 sing 826 n n C22 H222 PC1 sing 827 n n C23 C24 PC1 sing 828 n n C23 H231 PC1 sing 829 n n C23 H232 PC1 sing 830 n n C24 C25 PC1 sing 831 n n C24 H241 PC1 sing 832 n n C24 H242 PC1 sing 833 n n C25 C26 PC1 sing 834 n n C25 H251 PC1 sing 835 n n C25 H252 PC1 sing 836 n n C26 C27 PC1 sing 837 n n C26 H261 PC1 sing 838 n n C26 H262 PC1 sing 839 n n C27 C28 PC1 sing 840 n n C27 H271 PC1 sing 841 n n C27 H272 PC1 sing 842 n n C28 C29 PC1 sing 843 n n C28 H281 PC1 sing 844 n n C28 H282 PC1 sing 845 n n C29 C2A PC1 sing 846 n n C29 H291 PC1 sing 847 n n C29 H292 PC1 sing 848 n n C2A C2B PC1 sing 849 n n C2A H2A1 PC1 sing 850 n n C2A H2A2 PC1 sing 851 n n C2B C2C PC1 sing 852 n n C2B H2B1 PC1 sing 853 n n C2B H2B2 PC1 sing 854 n n C2C C2D PC1 sing 855 n n C2C H2C1 PC1 sing 856 n n C2C H2C2 PC1 sing 857 n n C2D C2E PC1 sing 858 n n C2D H2D1 PC1 sing 859 n n C2D H2D2 PC1 sing 860 n n C2E C2F PC1 sing 861 n n C2E H2E1 PC1 sing 862 n n C2E H2E2 PC1 sing 863 n n C2F C2G PC1 sing 864 n n C2F H2F1 PC1 sing 865 n n C2F H2F2 PC1 sing 866 n n C2G C2H PC1 sing 867 n n C2G H2G1 PC1 sing 868 n n C2G H2G2 PC1 sing 869 n n C2H C2I PC1 sing 870 n n C2H H2H1 PC1 sing 871 n n C2H H2H2 PC1 sing 872 n n C2I H2I1 PC1 sing 873 n n C2I H2I2 PC1 sing 874 n n C2I H2I3 PC1 sing 875 n n C3 O31 PC1 sing 876 n n C3 H31 PC1 sing 877 n n C3 H32 PC1 sing 878 n n O31 C31 PC1 sing 879 n n C31 O32 PC1 doub 880 n n C31 C32 PC1 sing 881 n n C32 C33 PC1 sing 882 n n C32 H321 PC1 sing 883 n n C32 H322 PC1 sing 884 n n C33 C34 PC1 sing 885 n n C33 H331 PC1 sing 886 n n C33 H332 PC1 sing 887 n n C34 C35 PC1 sing 888 n n C34 H341 PC1 sing 889 n n C34 H342 PC1 sing 890 n n C35 C36 PC1 sing 891 n n C35 H351 PC1 sing 892 n n C35 H352 PC1 sing 893 n n C36 C37 PC1 sing 894 n n C36 H361 PC1 sing 895 n n C36 H362 PC1 sing 896 n n C37 C38 PC1 sing 897 n n C37 H371 PC1 sing 898 n n C37 H372 PC1 sing 899 n n C38 C39 PC1 sing 900 n n C38 H381 PC1 sing 901 n n C38 H382 PC1 sing 902 n n C39 C3A PC1 sing 903 n n C39 H391 PC1 sing 904 n n C39 H392 PC1 sing 905 n n C3A C3B PC1 sing 906 n n C3A H3A1 PC1 sing 907 n n C3A H3A2 PC1 sing 908 n n C3B C3C PC1 sing 909 n n C3B H3B1 PC1 sing 910 n n C3B H3B2 PC1 sing 911 n n C3C C3D PC1 sing 912 n n C3C H3C1 PC1 sing 913 n n C3C H3C2 PC1 sing 914 n n C3D C3E PC1 sing 915 n n C3D H3D1 PC1 sing 916 n n C3D H3D2 PC1 sing 917 n n C3E C3F PC1 sing 918 n n C3E H3E1 PC1 sing 919 n n C3E H3E2 PC1 sing 920 n n C3F C3G PC1 sing 921 n n C3F H3F1 PC1 sing 922 n n C3F H3F2 PC1 sing 923 n n C3G C3H PC1 sing 924 n n C3G H3G1 PC1 sing 925 n n C3G H3G2 PC1 sing 926 n n C3H C3I PC1 sing 927 n n C3H H3H1 PC1 sing 928 n n C3H H3H2 PC1 sing 929 n n C3I H3I1 PC1 sing 930 n n C3I H3I2 PC1 sing 931 n n C3I H3I3 PC1 sing 932 n n # _atom_sites.entry_id 8UGD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 11 CDL 3A 1 501 31 CDL CDL . X 12 3PE 3A 1 502 32 3PE 3PE . Y 12 3PE 3A 1 503 33 3PE 3PE . Z 13 HEM 3C 1 501 501 HEM HEM . AA 13 HEM 3C 1 502 502 HEM HEM . BA 14 U10 3C 1 503 503 U10 U10 . CA 14 U10 3C 1 504 504 U10 U10 . DA 11 CDL 3C 1 505 17 CDL CDL . EA 12 3PE 3C 1 506 90 3PE 3PE . FA 15 HEC 3D 1 501 501 HEC HEC . GA 12 3PE 3D 1 502 91 3PE 3PE . HA 11 CDL 3D 1 503 94 CDL CDL . IA 16 FES 3E 1 301 301 FES FES . JA 17 PC1 3E 1 302 97 PC1 PC1 . KA 12 3PE 3G 1 101 7 3PE 3PE . LA 12 3PE 3N 1 501 133 3PE 3PE . MA 12 3PE 3N 1 502 169 3PE 3PE . NA 13 HEM 3P 1 501 501 HEM HEM . OA 13 HEM 3P 1 502 502 HEM HEM . PA 14 U10 3P 1 503 503 U10 U10 . QA 14 U10 3P 1 504 504 U10 U10 . RA 12 3PE 3P 1 505 93 3PE 3PE . SA 11 CDL 3P 1 506 166 CDL CDL . TA 11 CDL 3P 1 507 167 CDL CDL . UA 15 HEC 3Q 1 501 501 HEC HEC . VA 11 CDL 3Q 1 502 45 CDL CDL . WA 12 3PE 3Q 1 503 92 3PE 3PE . XA 16 FES 3R 1 301 301 FES FES . YA 17 PC1 3R 1 302 96 PC1 PC1 . ZA 12 3PE 3R 1 303 168 3PE 3PE . AB 17 PC1 3X 1 101 165 PC1 PC1 . BB 12 3PE 3Y 1 101 48 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . AB 17 213.346 261.761 184.796 1 67.05 ? O12 PC1 101 3X 1 HETATM 2 P P PC1 . . . AB 17 212.685 262.191 183.516 1 67.05 ? P PC1 101 3X 1 HETATM 3 O O14 PC1 . . . AB 17 213.129 261.613 182.201 1 67.05 ? O14 PC1 101 3X 1 HETATM 4 O O13 PC1 . . . AB 17 212.786 263.792 183.432 1 67.05 ? O13 PC1 101 3X 1 HETATM 5 C C11 PC1 . . . AB 17 211.637 264.609 183.787 1 67.05 ? C11 PC1 101 3X 1 HETATM 6 C C12 PC1 . . . AB 17 210.724 264.731 182.592 1 67.05 ? C12 PC1 101 3X 1 HETATM 7 N N PC1 . . . AB 17 209.462 265.544 182.802 1 67.05 ? N PC1 101 3X 1 HETATM 8 C C13 PC1 . . . AB 17 208.638 264.926 183.874 1 67.05 ? C13 PC1 101 3X 1 HETATM 9 C C14 PC1 . . . AB 17 209.813 266.932 183.2 1 67.05 ? C14 PC1 101 3X 1 HETATM 10 C C15 PC1 . . . AB 17 208.672 265.585 181.544 1 67.05 ? C15 PC1 101 3X 1 HETATM 11 O O11 PC1 . . . AB 17 211.113 261.904 183.679 1 67.05 ? O11 PC1 101 3X 1 HETATM 12 C C1 PC1 . . . AB 17 210.674 260.563 184.027 1 67.05 ? C1 PC1 101 3X 1 HETATM 13 C C2 PC1 . . . AB 17 210.077 260.568 185.417 1 67.05 ? C2 PC1 101 3X 1 HETATM 14 O O21 PC1 . . . AB 17 208.632 260.725 185.374 1 67.05 ? O21 PC1 101 3X 1 HETATM 15 C C21 PC1 . . . AB 17 207.884 259.669 185.017 1 67.05 ? C21 PC1 101 3X 1 HETATM 16 O O22 PC1 . . . AB 17 208.348 258.627 184.638 1 67.05 ? O22 PC1 101 3X 1 HETATM 17 C C22 PC1 . . . AB 17 206.424 259.933 185.247 1 67.05 ? C22 PC1 101 3X 1 HETATM 18 C C23 PC1 . . . AB 17 206.151 261.323 185.729 1 67.05 ? C23 PC1 101 3X 1 HETATM 19 C C24 PC1 . . . AB 17 204.899 261.418 186.584 1 67.05 ? C24 PC1 101 3X 1 HETATM 20 C C25 PC1 . . . AB 17 205.006 260.709 187.911 1 67.05 ? C25 PC1 101 3X 1 HETATM 21 C C26 PC1 . . . AB 17 203.823 260.915 188.825 1 67.05 ? C26 PC1 101 3X 1 HETATM 22 C C3 PC1 . . . AB 17 210.65 261.642 186.314 1 67.05 ? C3 PC1 101 3X 1 HETATM 23 O O31 PC1 . . . AB 17 209.924 261.678 187.563 1 67.05 ? O31 PC1 101 3X 1 HETATM 24 C C31 PC1 . . . AB 17 208.89 262.512 187.619 1 67.05 ? C31 PC1 101 3X 1 HETATM 25 O O32 PC1 . . . AB 17 208.556 263.208 186.698 1 67.05 ? O32 PC1 101 3X 1 HETATM 26 C C32 PC1 . . . AB 17 208.222 262.483 188.965 1 67.05 ? C32 PC1 101 3X 1 HETATM 27 C C33 PC1 . . . AB 17 209.121 262.909 190.081 1 67.05 ? C33 PC1 101 3X 1 HETATM 28 C C34 PC1 . . . AB 17 208.397 262.992 191.414 1 67.05 ? C34 PC1 101 3X 1 HETATM 29 C C35 PC1 . . . AB 17 207.285 264.01 191.451 1 67.05 ? C35 PC1 101 3X 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 63 _model_server_stats.query_time_ms 395 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #