data_8UGD # _model_server_result.job_id XYG47YAqQCtuacPv17VUlg _model_server_result.datetime_utc '2024-11-15 04:59:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ugd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":301}' # _entry.id 8UGD # _exptl.entry_id 8UGD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 175.82 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UGD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 16 IA N N ? 16 XA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 222 3E CYS 222 1_555 E SG CYS 238 3E CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 H SG CYS 37 3H CYS 49 1_555 H SG CYS 81 3H CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 H SG CYS 53 3H CYS 65 1_555 H SG CYS 67 3H CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 O SG CYS 236 3R CYS 236 1_555 O SG CYS 238 3R CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? disulf ? disulf5 R SG CYS 37 3U CYS 24 1_555 R SG CYS 81 3U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 R SG CYS 53 3U CYS 40 1_555 R SG CYS 67 3U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 N SG CYS 122 3Q CYS 37 1_555 UA CAB HEC . 3Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc1 C NE2 HIS 83 3C HIS 83 1_555 Z FE HEM . 3C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc2 C NE2 HIS 182 3C HIS 182 1_555 Z FE HEM . 3C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc3 C NE2 HIS 196 3C HIS 196 1_555 AA FE HEM . 3C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 D NE2 HIS 126 3D HIS 129 1_555 FA FE HEC . 3D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc5 E SG CYS 217 3E CYS 217 1_555 IA FE1 FES . 3E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc6 E ND1 HIS 219 3E HIS 219 1_555 IA FE2 FES . 3E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc7 E SG CYS 236 3E CYS 236 1_555 IA FE1 FES . 3E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc8 E ND1 HIS 239 3E HIS 239 1_555 IA FE2 FES . 3E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc9 M NE2 HIS 83 3P HIS 83 1_555 NA FE HEM . 3P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc10 M NE2 HIS 97 3P HIS 97 1_555 OA FE HEM . 3P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc11 M NE2 HIS 196 3P HIS 196 1_555 OA FE HEM . 3P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc12 N NE2 HIS 126 3Q HIS 41 1_555 UA FE HEC . 3Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc13 O SG CYS 217 3R CYS 217 1_555 XA FE1 FES . 3R FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc14 O ND1 HIS 219 3R HIS 219 1_555 XA FE2 FES . 3R FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc15 O SG CYS 236 3R CYS 236 1_555 XA FE1 FES . 3R FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc16 O SG CYS 238 3R CYS 238 1_555 XA FE1 FES . 3R FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc17 O ND1 HIS 239 3R HIS 239 1_555 XA FE2 FES . 3R FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 470 n n FE1 S2 FES sing 471 n n FE2 S1 FES sing 472 n n FE2 S2 FES sing 473 n n # _atom_sites.entry_id 8UGD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 11 CDL 3A 1 501 31 CDL CDL . X 12 3PE 3A 1 502 32 3PE 3PE . Y 12 3PE 3A 1 503 33 3PE 3PE . Z 13 HEM 3C 1 501 501 HEM HEM . AA 13 HEM 3C 1 502 502 HEM HEM . BA 14 U10 3C 1 503 503 U10 U10 . CA 14 U10 3C 1 504 504 U10 U10 . DA 11 CDL 3C 1 505 17 CDL CDL . EA 12 3PE 3C 1 506 90 3PE 3PE . FA 15 HEC 3D 1 501 501 HEC HEC . GA 12 3PE 3D 1 502 91 3PE 3PE . HA 11 CDL 3D 1 503 94 CDL CDL . IA 16 FES 3E 1 301 301 FES FES . JA 17 PC1 3E 1 302 97 PC1 PC1 . KA 12 3PE 3G 1 101 7 3PE 3PE . LA 12 3PE 3N 1 501 133 3PE 3PE . MA 12 3PE 3N 1 502 169 3PE 3PE . NA 13 HEM 3P 1 501 501 HEM HEM . OA 13 HEM 3P 1 502 502 HEM HEM . PA 14 U10 3P 1 503 503 U10 U10 . QA 14 U10 3P 1 504 504 U10 U10 . RA 12 3PE 3P 1 505 93 3PE 3PE . SA 11 CDL 3P 1 506 166 CDL CDL . TA 11 CDL 3P 1 507 167 CDL CDL . UA 15 HEC 3Q 1 501 501 HEC HEC . VA 11 CDL 3Q 1 502 45 CDL CDL . WA 12 3PE 3Q 1 503 92 3PE 3PE . XA 16 FES 3R 1 301 301 FES FES . YA 17 PC1 3R 1 302 96 PC1 PC1 . ZA 12 3PE 3R 1 303 168 3PE 3PE . AB 17 PC1 3X 1 101 165 PC1 PC1 . BB 12 3PE 3Y 1 101 48 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . IA 16 179.118 221.582 152.578 1 193.95 ? FE1 FES 301 3E 1 HETATM 2 FE FE2 FES . . . IA 16 181.204 220.099 154.356 1 193.95 ? FE2 FES 301 3E 1 HETATM 3 S S1 FES . . . IA 16 179.063 219.725 153.829 1 193.95 ? S1 FES 301 3E 1 HETATM 4 S S2 FES . . . IA 16 181.068 222.148 153.495 1 193.95 ? S2 FES 301 3E 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #