data_8UGD # _model_server_result.job_id WI517V15gBXHcemR-aT7fA _model_server_result.datetime_utc '2024-11-15 04:56:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ugd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"FA","auth_seq_id":501}' # _entry.id 8UGD # _exptl.entry_id 8UGD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UGD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 FA N N ? 15 UA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 222 3E CYS 222 1_555 E SG CYS 238 3E CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 H SG CYS 37 3H CYS 49 1_555 H SG CYS 81 3H CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 H SG CYS 53 3H CYS 65 1_555 H SG CYS 67 3H CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 O SG CYS 236 3R CYS 236 1_555 O SG CYS 238 3R CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? disulf ? disulf5 R SG CYS 37 3U CYS 24 1_555 R SG CYS 81 3U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 R SG CYS 53 3U CYS 40 1_555 R SG CYS 67 3U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 N SG CYS 122 3Q CYS 37 1_555 UA CAB HEC . 3Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc1 C NE2 HIS 83 3C HIS 83 1_555 Z FE HEM . 3C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc2 C NE2 HIS 182 3C HIS 182 1_555 Z FE HEM . 3C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc3 C NE2 HIS 196 3C HIS 196 1_555 AA FE HEM . 3C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 D NE2 HIS 126 3D HIS 129 1_555 FA FE HEC . 3D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc5 E SG CYS 217 3E CYS 217 1_555 IA FE1 FES . 3E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc6 E ND1 HIS 219 3E HIS 219 1_555 IA FE2 FES . 3E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc7 E SG CYS 236 3E CYS 236 1_555 IA FE1 FES . 3E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc8 E ND1 HIS 239 3E HIS 239 1_555 IA FE2 FES . 3E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc9 M NE2 HIS 83 3P HIS 83 1_555 NA FE HEM . 3P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc10 M NE2 HIS 97 3P HIS 97 1_555 OA FE HEM . 3P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc11 M NE2 HIS 196 3P HIS 196 1_555 OA FE HEM . 3P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc12 N NE2 HIS 126 3Q HIS 41 1_555 UA FE HEC . 3Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc13 O SG CYS 217 3R CYS 217 1_555 XA FE1 FES . 3R FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc14 O ND1 HIS 219 3R HIS 219 1_555 XA FE2 FES . 3R FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc15 O SG CYS 236 3R CYS 236 1_555 XA FE1 FES . 3R FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc16 O SG CYS 238 3R CYS 238 1_555 XA FE1 FES . 3R FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc17 O ND1 HIS 239 3R HIS 239 1_555 XA FE2 FES . 3R FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 520 n n FE NB HEC sing 521 n n FE NC HEC sing 522 n n FE ND HEC sing 523 n n CHA C1A HEC doub 524 n n CHA C4D HEC sing 525 n n CHA HHA HEC sing 526 n n CHB C4A HEC doub 527 n n CHB C1B HEC sing 528 n n CHB HHB HEC sing 529 n n CHC C4B HEC doub 530 n n CHC C1C HEC sing 531 n n CHC HHC HEC sing 532 n n CHD C4C HEC doub 533 n n CHD C1D HEC sing 534 n n CHD HHD HEC sing 535 n n NA C1A HEC sing 536 n y NA C4A HEC sing 537 n y C1A C2A HEC sing 538 n y C2A C3A HEC doub 539 n y C2A CAA HEC sing 540 n n C3A C4A HEC sing 541 n y C3A CMA HEC sing 542 n n CMA HMA1 HEC sing 543 n n CMA HMA2 HEC sing 544 n n CMA HMA3 HEC sing 545 n n CAA CBA HEC sing 546 n n CAA HAA1 HEC sing 547 n n CAA HAA2 HEC sing 548 n n CBA CGA HEC sing 549 n n CBA HBA1 HEC sing 550 n n CBA HBA2 HEC sing 551 n n CGA O1A HEC doub 552 n n CGA O2A HEC sing 553 n n O2A H2A HEC sing 554 n n NB C1B HEC sing 555 n y NB C4B HEC sing 556 n y C1B C2B HEC doub 557 n y C2B C3B HEC sing 558 n y C2B CMB HEC sing 559 n n C3B C4B HEC sing 560 n y C3B CAB HEC doub 561 e n CMB HMB1 HEC sing 562 n n CMB HMB2 HEC sing 563 n n CMB HMB3 HEC sing 564 n n CAB CBB HEC sing 565 n n CAB HAB HEC sing 566 n n CBB HBB1 HEC sing 567 n n CBB HBB2 HEC sing 568 n n CBB HBB3 HEC sing 569 n n NC C1C HEC sing 570 n y NC C4C HEC sing 571 n y C1C C2C HEC doub 572 n y C2C C3C HEC sing 573 n y C2C CMC HEC sing 574 n n C3C C4C HEC sing 575 n y C3C CAC HEC doub 576 e n CMC HMC1 HEC sing 577 n n CMC HMC2 HEC sing 578 n n CMC HMC3 HEC sing 579 n n CAC CBC HEC sing 580 n n CAC HAC HEC sing 581 n n CBC HBC1 HEC sing 582 n n CBC HBC2 HEC sing 583 n n CBC HBC3 HEC sing 584 n n ND C1D HEC sing 585 n y ND C4D HEC sing 586 n y C1D C2D HEC doub 587 n y C2D C3D HEC sing 588 n y C2D CMD HEC sing 589 n n C3D C4D HEC doub 590 n y C3D CAD HEC sing 591 n n CMD HMD1 HEC sing 592 n n CMD HMD2 HEC sing 593 n n CMD HMD3 HEC sing 594 n n CAD CBD HEC sing 595 n n CAD HAD1 HEC sing 596 n n CAD HAD2 HEC sing 597 n n CBD CGD HEC sing 598 n n CBD HBD1 HEC sing 599 n n CBD HBD2 HEC sing 600 n n CGD O1D HEC doub 601 n n CGD O2D HEC sing 602 n n O2D H2D HEC sing 603 n n # _atom_sites.entry_id 8UGD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 11 CDL 3A 1 501 31 CDL CDL . X 12 3PE 3A 1 502 32 3PE 3PE . Y 12 3PE 3A 1 503 33 3PE 3PE . Z 13 HEM 3C 1 501 501 HEM HEM . AA 13 HEM 3C 1 502 502 HEM HEM . BA 14 U10 3C 1 503 503 U10 U10 . CA 14 U10 3C 1 504 504 U10 U10 . DA 11 CDL 3C 1 505 17 CDL CDL . EA 12 3PE 3C 1 506 90 3PE 3PE . FA 15 HEC 3D 1 501 501 HEC HEC . GA 12 3PE 3D 1 502 91 3PE 3PE . HA 11 CDL 3D 1 503 94 CDL CDL . IA 16 FES 3E 1 301 301 FES FES . JA 17 PC1 3E 1 302 97 PC1 PC1 . KA 12 3PE 3G 1 101 7 3PE 3PE . LA 12 3PE 3N 1 501 133 3PE 3PE . MA 12 3PE 3N 1 502 169 3PE 3PE . NA 13 HEM 3P 1 501 501 HEM HEM . OA 13 HEM 3P 1 502 502 HEM HEM . PA 14 U10 3P 1 503 503 U10 U10 . QA 14 U10 3P 1 504 504 U10 U10 . RA 12 3PE 3P 1 505 93 3PE 3PE . SA 11 CDL 3P 1 506 166 CDL CDL . TA 11 CDL 3P 1 507 167 CDL CDL . UA 15 HEC 3Q 1 501 501 HEC HEC . VA 11 CDL 3Q 1 502 45 CDL CDL . WA 12 3PE 3Q 1 503 92 3PE 3PE . XA 16 FES 3R 1 301 301 FES FES . YA 17 PC1 3R 1 302 96 PC1 PC1 . ZA 12 3PE 3R 1 303 168 3PE 3PE . AB 17 PC1 3X 1 101 165 PC1 PC1 . BB 12 3PE 3Y 1 101 48 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . FA 15 168.822 273.084 155.942 1 50.77 ? FE HEC 501 3D 1 HETATM 2 C CHA HEC . . . FA 15 171.241 274.373 157.994 1 50.77 ? CHA HEC 501 3D 1 HETATM 3 C CHB HEC . . . FA 15 166.883 272.249 158.638 1 50.77 ? CHB HEC 501 3D 1 HETATM 4 C CHC HEC . . . FA 15 166.133 272.875 153.833 1 50.77 ? CHC HEC 501 3D 1 HETATM 5 C CHD HEC . . . FA 15 171.004 272.997 153.306 1 50.77 ? CHD HEC 501 3D 1 HETATM 6 N NA HEC . . . FA 15 169.031 273.281 158.011 1 50.77 ? NA HEC 501 3D 1 HETATM 7 C C1A HEC . . . FA 15 170.063 273.816 158.681 1 50.77 ? C1A HEC 501 3D 1 HETATM 8 C C2A HEC . . . FA 15 169.918 273.828 160.154 1 50.77 ? C2A HEC 501 3D 1 HETATM 9 C C3A HEC . . . FA 15 168.608 273.182 160.348 1 50.77 ? C3A HEC 501 3D 1 HETATM 10 C C4A HEC . . . FA 15 168.165 272.903 158.963 1 50.77 ? C4A HEC 501 3D 1 HETATM 11 C CMA HEC . . . FA 15 167.878 272.885 161.623 1 50.77 ? CMA HEC 501 3D 1 HETATM 12 C CAA HEC . . . FA 15 170.905 274.337 161.174 1 50.77 ? CAA HEC 501 3D 1 HETATM 13 C CBA HEC . . . FA 15 170.391 275.551 161.927 1 50.77 ? CBA HEC 501 3D 1 HETATM 14 C CGA HEC . . . FA 15 171.274 275.726 163.136 1 50.77 ? CGA HEC 501 3D 1 HETATM 15 O O1A HEC . . . FA 15 172.504 275.571 162.989 1 50.77 ? O1A HEC 501 3D 1 HETATM 16 O O2A HEC . . . FA 15 170.749 276.005 164.234 1 50.77 ? O2A HEC 501 3D 1 HETATM 17 N NB HEC . . . FA 15 166.802 272.624 156.197 1 50.77 ? NB HEC 501 3D 1 HETATM 18 C C1B HEC . . . FA 15 166.17 272.315 157.348 1 50.77 ? C1B HEC 501 3D 1 HETATM 19 C C2B HEC . . . FA 15 164.719 272.026 157.229 1 50.77 ? C2B HEC 501 3D 1 HETATM 20 C C3B HEC . . . FA 15 164.515 272.218 155.779 1 50.77 ? C3B HEC 501 3D 1 HETATM 21 C C4B HEC . . . FA 15 165.85 272.581 155.251 1 50.77 ? C4B HEC 501 3D 1 HETATM 22 C CMB HEC . . . FA 15 163.781 271.653 158.346 1 50.77 ? CMB HEC 501 3D 1 HETATM 23 C CAB HEC . . . FA 15 163.284 272.095 154.956 1 50.77 ? CAB HEC 501 3D 1 HETATM 24 C CBB HEC . . . FA 15 161.931 271.726 155.515 1 50.77 ? CBB HEC 501 3D 1 HETATM 25 N NC HEC . . . FA 15 168.598 272.952 153.87 1 50.77 ? NC HEC 501 3D 1 HETATM 26 C C1C HEC . . . FA 15 167.45 272.876 153.171 1 50.77 ? C1C HEC 501 3D 1 HETATM 27 C C2C HEC . . . FA 15 167.602 272.81 151.695 1 50.77 ? C2C HEC 501 3D 1 HETATM 28 C C3C HEC . . . FA 15 169.073 272.847 151.562 1 50.77 ? C3C HEC 501 3D 1 HETATM 29 C C4C HEC . . . FA 15 169.573 272.934 152.949 1 50.77 ? C4C HEC 501 3D 1 HETATM 30 C CMC HEC . . . FA 15 166.503 272.712 150.672 1 50.77 ? CMC HEC 501 3D 1 HETATM 31 C CAC HEC . . . FA 15 169.947 272.802 150.36 1 50.77 ? CAC HEC 501 3D 1 HETATM 32 C CBC HEC . . . FA 15 169.446 272.706 148.938 1 50.77 ? CBC HEC 501 3D 1 HETATM 33 N ND HEC . . . FA 15 170.829 273.605 155.687 1 50.77 ? ND HEC 501 3D 1 HETATM 34 C C1D HEC . . . FA 15 171.562 273.523 154.566 1 50.77 ? C1D HEC 501 3D 1 HETATM 35 C C2D HEC . . . FA 15 172.966 273.973 154.711 1 50.77 ? C2D HEC 501 3D 1 HETATM 36 C C3D HEC . . . FA 15 173.033 274.387 156.122 1 50.77 ? C3D HEC 501 3D 1 HETATM 37 C C4D HEC . . . FA 15 171.664 274.11 156.608 1 50.77 ? C4D HEC 501 3D 1 HETATM 38 C CMD HEC . . . FA 15 174.048 274.008 153.668 1 50.77 ? CMD HEC 501 3D 1 HETATM 39 C CAD HEC . . . FA 15 174.201 274.945 156.891 1 50.77 ? CAD HEC 501 3D 1 HETATM 40 C CBD HEC . . . FA 15 173.948 276.397 157.266 1 50.77 ? CBD HEC 501 3D 1 HETATM 41 C CGD HEC . . . FA 15 174.782 276.723 158.478 1 50.77 ? CGD HEC 501 3D 1 HETATM 42 O O1D HEC . . . FA 15 175.468 275.81 158.985 1 50.77 ? O1D HEC 501 3D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 42 #