data_8UGT # _model_server_result.job_id C98UMEq537yO-9Euz4Aw5w _model_server_result.datetime_utc '2024-10-10 13:26:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ugt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8UGT # _exptl.entry_id 8UGT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 531.585 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "8-(4-beta-D-glucopyranuronosylpiperazin-1-yl)-5-(methylamino)-1,2,3,4-tetrahydro[1,2,3]triazino[4',5':4,5]thieno[2,3-c]isoquinoline" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8UGT _cell.length_a 179.938 _cell.length_b 179.938 _cell.length_c 132.792 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UGT _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall 'P 64 2 (x,y,z+1/6)' _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 89.969 -155.830879 0 3 'crystal symmetry operation' 9_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -44.264 4 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 89.969 -155.830879 -44.264 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H29 N7 O6 S' _chem_comp.formula_weight 531.585 _chem_comp.id WOF _chem_comp.mon_nstd_flag . _chem_comp.name "8-(4-beta-D-glucopyranuronosylpiperazin-1-yl)-5-(methylamino)-1,2,3,4-tetrahydro[1,2,3]triazino[4',5':4,5]thieno[2,3-c]isoquinoline" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N02 C01 WOF sing 387 n n C03 N02 WOF sing 388 n n C04 C03 WOF doub 389 n y C06 C05 WOF sing 390 n n C07 C06 WOF sing 391 n n C08 C07 WOF sing 392 n n C05 C04 WOF sing 393 n n C09 C04 WOF sing 394 n y C10 C09 WOF doub 395 n y C12 C11 WOF doub 396 n y S13 C12 WOF sing 397 n y C14 C12 WOF sing 398 n y C16 N15 WOF sing 399 n n C17 C16 WOF sing 400 n n N18 C17 WOF sing 401 n n O20 C19 WOF sing 402 n n C21 O20 WOF sing 403 n n O23 C22 WOF doub 404 n n O24 C22 WOF sing 405 n n C22 C21 WOF sing 406 n n C25 C21 WOF sing 407 n n O26 C25 WOF sing 408 n n C27 C25 WOF sing 409 n n O28 C27 WOF sing 410 n n C29 C27 WOF sing 411 n n O30 C29 WOF sing 412 n n C19 N18 WOF sing 413 n n C31 N18 WOF sing 414 n n C32 C31 WOF sing 415 n n N15 C14 WOF sing 416 n n N33 C14 WOF doub 417 n y N34 N33 WOF sing 418 n y N35 N34 WOF doub 419 n y C11 C10 WOF sing 420 n y C36 C10 WOF sing 421 n y N37 C36 WOF doub 422 n y C03 N37 WOF sing 423 n y C08 C09 WOF sing 424 n n C11 N35 WOF sing 425 n y S13 C36 WOF sing 426 n y N15 C32 WOF sing 427 n n C19 C29 WOF sing 428 n n C17 H172 WOF sing 429 n n C17 H171 WOF sing 430 n n C21 H211 WOF sing 431 n n C19 H191 WOF sing 432 n n C25 H251 WOF sing 433 n n C27 H271 WOF sing 434 n n O28 H281 WOF sing 435 n n C29 H291 WOF sing 436 n n C01 H012 WOF sing 437 n n C01 H013 WOF sing 438 n n C01 H011 WOF sing 439 n n C05 H051 WOF sing 440 n n C05 H052 WOF sing 441 n n C06 H062 WOF sing 442 n n C06 H061 WOF sing 443 n n C07 H071 WOF sing 444 n n C07 H072 WOF sing 445 n n C08 H082 WOF sing 446 n n C08 H081 WOF sing 447 n n C16 H161 WOF sing 448 n n C16 H162 WOF sing 449 n n C31 H312 WOF sing 450 n n C31 H311 WOF sing 451 n n C32 H322 WOF sing 452 n n C32 H321 WOF sing 453 n n N02 H021 WOF sing 454 n n O24 H2 WOF sing 455 n n O26 H261 WOF sing 456 n n O30 H301 WOF sing 457 n n # _atom_sites.entry_id 8UGT _atom_sites.fract_transf_matrix[1][1] 0.005557 _atom_sites.fract_transf_matrix[1][2] 0.003209 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WOF A 1 701 714 WOF 81G . C 3 WR8 A 1 702 715 WR8 I81 . D 4 GOL A 1 703 716 GOL GOL . E 4 GOL A 1 704 717 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 WOF . . . B 2 17.919 -84.076 -17.685 0.78 52.83 ? C10 WOF 701 A 1 HETATM 2 C C17 WOF . . . B 2 19.725 -81.562 -11.902 0.78 57.56 ? C17 WOF 701 A 1 HETATM 3 C C21 WOF . . . B 2 23.519 -80.467 -11.402 0.78 42.31 ? C21 WOF 701 A 1 HETATM 4 C C22 WOF . . . B 2 23.838 -81.19 -12.648 0.78 41.44 ? C22 WOF 701 A 1 HETATM 5 C C12 WOF . . . B 2 18.771 -83.973 -15.425 0.78 54.84 ? C12 WOF 701 A 1 HETATM 6 C C14 WOF . . . B 2 19.71 -84.375 -14.413 0.78 54.42 ? C14 WOF 701 A 1 HETATM 7 C C19 WOF . . . B 2 21.216 -80.945 -10.481 0.78 45.79 ? C19 WOF 701 A 1 HETATM 8 C C25 WOF . . . B 2 23.95 -81.42 -10.28 0.78 41.27 ? C25 WOF 701 A 1 HETATM 9 C C27 WOF . . . B 2 23.289 -81.022 -9.031 0.78 42.89 ? C27 WOF 701 A 1 HETATM 10 O O28 WOF . . . B 2 23.855 -81.816 -7.958 0.78 43.67 ? O28 WOF 701 A 1 HETATM 11 C C29 WOF . . . B 2 21.858 -81.275 -9.116 0.78 47.47 ? C29 WOF 701 A 1 HETATM 12 C C01 WOF . . . B 2 14.973 -81.053 -20.399 0.78 51.54 ? C01 WOF 701 A 1 HETATM 13 C C03 WOF . . . B 2 15.886 -83.002 -19.183 0.78 51.95 ? C03 WOF 701 A 1 HETATM 14 C C04 WOF . . . B 2 16.817 -83.935 -19.802 0.78 53.84 ? C04 WOF 701 A 1 HETATM 15 C C05 WOF . . . B 2 16.604 -84.28 -21.284 0.78 49.53 ? C05 WOF 701 A 1 HETATM 16 C C06 WOF . . . B 2 17.331 -85.57 -21.654 0.78 49.67 ? C06 WOF 701 A 1 HETATM 17 C C07 WOF . . . B 2 18.751 -85.549 -21.191 0.78 50.14 ? C07 WOF 701 A 1 HETATM 18 C C08 WOF . . . B 2 18.85 -85.488 -19.684 0.78 50.97 ? C08 WOF 701 A 1 HETATM 19 C C09 WOF . . . B 2 17.833 -84.482 -19.064 0.78 53.9 ? C09 WOF 701 A 1 HETATM 20 C C11 WOF . . . B 2 18.934 -84.539 -16.716 0.78 53.26 ? C11 WOF 701 A 1 HETATM 21 C C16 WOF . . . B 2 19.394 -82.349 -13.127 0.78 50.5 ? C16 WOF 701 A 1 HETATM 22 C C31 WOF . . . B 2 20.869 -83.23 -10.919 0.78 53.12 ? C31 WOF 701 A 1 HETATM 23 C C32 WOF . . . B 2 20.523 -84.201 -12.034 0.78 52.34 ? C32 WOF 701 A 1 HETATM 24 C C36 WOF . . . B 2 16.979 -83.166 -17.174 0.78 54.32 ? C36 WOF 701 A 1 HETATM 25 N N02 WOF . . . B 2 14.826 -82.43 -19.95 0.78 50.02 ? N02 WOF 701 A 1 HETATM 26 N N15 WOF . . . B 2 19.577 -83.788 -13.066 0.78 53.41 ? N15 WOF 701 A 1 HETATM 27 N N18 WOF . . . B 2 20.894 -81.913 -11.319 0.78 53.53 ? N18 WOF 701 A 1 HETATM 28 N N33 WOF . . . B 2 20.703 -85.24 -14.704 0.78 54.81 ? N33 WOF 701 A 1 HETATM 29 N N34 WOF . . . B 2 20.791 -85.726 -15.942 0.78 53.56 ? N34 WOF 701 A 1 HETATM 30 N N35 WOF . . . B 2 19.964 -85.414 -16.921 0.78 52.62 ? N35 WOF 701 A 1 HETATM 31 N N37 WOF . . . B 2 15.997 -82.65 -17.911 0.78 53 ? N37 WOF 701 A 1 HETATM 32 O O20 WOF . . . B 2 22.127 -80.103 -11.353 0.78 54.05 ? O20 WOF 701 A 1 HETATM 33 O O23 WOF . . . B 2 22.965 -81.868 -13.241 0.78 42.84 ? O23 WOF 701 A 1 HETATM 34 O O24 WOF . . . B 2 25.034 -81.127 -13.094 0.78 43.01 ? O24 WOF 701 A 1 HETATM 35 O O26 WOF . . . B 2 25.353 -81.312 -10.13 0.78 42.93 ? O26 WOF 701 A 1 HETATM 36 O O30 WOF . . . B 2 21.241 -80.385 -8.156 0.78 45.37 ? O30 WOF 701 A 1 HETATM 37 S S13 WOF . . . B 2 17.409 -82.94 -15.527 0.78 66.26 ? S13 WOF 701 A 1 HETATM 38 H H172 WOF . . . B 2 18.921 -81.741 -11.223 0.78 69.07 ? H172 WOF 701 A 1 HETATM 39 H H171 WOF . . . B 2 19.747 -80.446 -12.2 0.78 69.07 ? H171 WOF 701 A 1 HETATM 40 H H211 WOF . . . B 2 24.129 -79.525 -11.342 0.78 50.77 ? H211 WOF 701 A 1 HETATM 41 H H191 WOF . . . B 2 20.34 -80.359 -10.258 0.78 54.95 ? H191 WOF 701 A 1 HETATM 42 H H251 WOF . . . B 2 23.684 -82.441 -10.538 0.78 49.52 ? H251 WOF 701 A 1 HETATM 43 H H271 WOF . . . B 2 23.465 -79.962 -8.85 0.78 51.47 ? H271 WOF 701 A 1 HETATM 44 H H281 WOF . . . B 2 23.969 -82.649 -8.246 0.78 52.4 ? H281 WOF 701 A 1 HETATM 45 H H291 WOF . . . B 2 21.659 -82.318 -8.794 0.78 56.96 ? H291 WOF 701 A 1 HETATM 46 H H012 WOF . . . B 2 14.933 -81.015 -21.442 0.78 61.84 ? H012 WOF 701 A 1 HETATM 47 H H013 WOF . . . B 2 15.92 -80.68 -20.068 0.78 61.84 ? H013 WOF 701 A 1 HETATM 48 H H011 WOF . . . B 2 14.187 -80.452 -19.983 0.78 61.84 ? H011 WOF 701 A 1 HETATM 49 H H051 WOF . . . B 2 15.501 -84.415 -21.473 0.78 59.44 ? H051 WOF 701 A 1 HETATM 50 H H052 WOF . . . B 2 16.982 -83.472 -21.888 0.78 59.44 ? H052 WOF 701 A 1 HETATM 51 H H062 WOF . . . B 2 17.307 -85.7 -22.765 0.78 59.61 ? H062 WOF 701 A 1 HETATM 52 H H061 WOF . . . B 2 16.835 -86.38 -21.182 0.78 59.61 ? H061 WOF 701 A 1 HETATM 53 H H071 WOF . . . B 2 19.24 -84.678 -21.609 0.78 60.17 ? H071 WOF 701 A 1 HETATM 54 H H072 WOF . . . B 2 19.226 -86.415 -21.525 0.78 60.17 ? H072 WOF 701 A 1 HETATM 55 H H082 WOF . . . B 2 19.819 -85.179 -19.432 0.78 61.16 ? H082 WOF 701 A 1 HETATM 56 H H081 WOF . . . B 2 18.662 -86.458 -19.277 0.78 61.16 ? H081 WOF 701 A 1 HETATM 57 H H161 WOF . . . B 2 18.354 -82.155 -13.303 0.78 60.6 ? H161 WOF 701 A 1 HETATM 58 H H162 WOF . . . B 2 19.969 -81.969 -13.935 0.78 60.6 ? H162 WOF 701 A 1 HETATM 59 H H312 WOF . . . B 2 20.156 -83.371 -10.122 0.78 63.74 ? H312 WOF 701 A 1 HETATM 60 H H311 WOF . . . B 2 21.882 -83.509 -10.55 0.78 63.74 ? H311 WOF 701 A 1 HETATM 61 H H322 WOF . . . B 2 20.105 -85.1 -11.563 0.78 62.81 ? H322 WOF 701 A 1 HETATM 62 H H321 WOF . . . B 2 21.492 -84.477 -12.532 0.78 62.81 ? H321 WOF 701 A 1 HETATM 63 H H021 WOF . . . B 2 13.979 -82.977 -20.17 0.78 60.02 ? H021 WOF 701 A 1 HETATM 64 H H261 WOF . . . B 2 25.576 -81.271 -9.158 0.78 51.52 ? H261 WOF 701 A 1 HETATM 65 H H301 WOF . . . B 2 20.499 -80.82 -7.743 0.78 54.44 ? H301 WOF 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 65 #