data_8UH5 # _model_server_result.job_id Y9aVKs0_OksFy0xGx0S3rA _model_server_result.datetime_utc '2024-11-15 03:25:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uh5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8UH5 # _exptl.entry_id 8UH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 655.704 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(1S,2S)-1-(5-fluoro-1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.17 _cell.angle_gamma 90 _cell.entry_id 8UH5 _cell.length_a 114.003 _cell.length_b 53.078 _cell.length_c 45.783 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 9.651651 0 -44.754092 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C _struct_conn.ptnr2_label_comp_id WOK _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id WOK _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.882 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C30 H37 F4 N5 O5 S' _chem_comp.formula_weight 655.704 _chem_comp.id WOK _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(1S,2S)-1-(5-fluoro-1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Inhibitor TKB-272, hemithioacetal bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAS CD2 WOK doub 392 n n CD2 NAQ WOK sing 393 n n CD2 CG WOK sing 394 n n NAQ CAP WOK sing 395 n n CB CG WOK sing 396 n n CB CA WOK sing 397 n n CG CD1 WOK sing 398 n n O C WOK sing 399 n n CAP CD1 WOK sing 400 n n C CA WOK sing 401 n n C CAH WOK sing 402 n n CA N WOK sing 403 n n N CAU WOK sing 404 n n FBK CBJ WOK sing 405 n n OBG CBE WOK doub 406 n n CAH SAG WOK sing 407 n y CAH NAI WOK doub 408 n y SAG CAC WOK sing 409 n y FBM CBJ WOK sing 410 n n CAU CAV WOK sing 411 n n CAU OAW WOK doub 412 n n CAV CBA WOK sing 413 n n CAV NAX WOK sing 414 n n CBJ FBL WOK sing 415 n n CBJ CBI WOK sing 416 n n CBE NAX WOK sing 417 n n CBE CBF WOK sing 418 n n CBC CBB WOK sing 419 n n NBH CBI WOK sing 420 n n NBH CBF WOK sing 421 n n NAI CAD WOK sing 422 n y CBQ CBO WOK sing 423 n n CBA CBB WOK sing 424 n n CBA CAZ WOK sing 425 n n NAX CAY WOK sing 426 n n CBI OBN WOK doub 427 n n CBB CBD WOK sing 428 n n CBB CAZ WOK sing 429 n n CBF CBO WOK sing 430 n n CAC CAD WOK doub 431 n y CAC CAB WOK sing 432 n y CAD CAE WOK sing 433 n y CBO CBP WOK sing 434 n n CBO CBR WOK sing 435 n n CAZ CAY WOK sing 436 n n CAB CAA WOK doub 437 n y CAE CAF WOK doub 438 n y CAA CAF WOK sing 439 n y CAF FBS WOK sing 440 n n CAE H1 WOK sing 441 n n CAA H2 WOK sing 442 n n CAB H3 WOK sing 443 n n CA H4 WOK sing 444 n n CB H5 WOK sing 445 n n CB H6 WOK sing 446 n n CG H7 WOK sing 447 n n CD1 H8 WOK sing 448 n n CD1 H9 WOK sing 449 n n CAP H10 WOK sing 450 n n CAP H11 WOK sing 451 n n NAQ H12 WOK sing 452 n n N H13 WOK sing 453 n n CAV H14 WOK sing 454 n n CBA H15 WOK sing 455 n n CBC H16 WOK sing 456 n n CBC H17 WOK sing 457 n n CBC H18 WOK sing 458 n n CBD H19 WOK sing 459 n n CBD H20 WOK sing 460 n n CBD H21 WOK sing 461 n n CAZ H22 WOK sing 462 n n CAY H23 WOK sing 463 n n CAY H24 WOK sing 464 n n CBF H25 WOK sing 465 n n CBQ H26 WOK sing 466 n n CBQ H27 WOK sing 467 n n CBQ H28 WOK sing 468 n n CBR H29 WOK sing 469 n n CBR H30 WOK sing 470 n n CBR H31 WOK sing 471 n n CBP H32 WOK sing 472 n n CBP H33 WOK sing 473 n n CBP H34 WOK sing 474 n n NBH H35 WOK sing 475 n n C H36 WOK sing 476 n n O H37 WOK sing 477 n n # _atom_sites.entry_id 8UH5 _atom_sites.fract_transf_matrix[1][1] 0.008772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001892 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022344 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WOK A 1 401 1 WOK DRG . C 3 PEG A 1 402 2 PEG PEG . D 4 HOH A 1 501 11 HOH HOH . D 4 HOH A 2 502 10 HOH HOH . D 4 HOH A 3 503 8 HOH HOH . D 4 HOH A 4 504 7 HOH HOH . D 4 HOH A 5 505 2 HOH HOH . D 4 HOH A 6 506 26 HOH HOH . D 4 HOH A 7 507 16 HOH HOH . D 4 HOH A 8 508 24 HOH HOH . D 4 HOH A 9 509 14 HOH HOH . D 4 HOH A 10 510 9 HOH HOH . D 4 HOH A 11 511 15 HOH HOH . D 4 HOH A 12 512 13 HOH HOH . D 4 HOH A 13 513 5 HOH HOH . D 4 HOH A 14 514 25 HOH HOH . D 4 HOH A 15 515 21 HOH HOH . D 4 HOH A 16 516 19 HOH HOH . D 4 HOH A 17 517 3 HOH HOH . D 4 HOH A 18 518 27 HOH HOH . D 4 HOH A 19 519 20 HOH HOH . D 4 HOH A 20 520 6 HOH HOH . D 4 HOH A 21 521 23 HOH HOH . D 4 HOH A 22 522 22 HOH HOH . D 4 HOH A 23 523 18 HOH HOH . D 4 HOH A 24 524 4 HOH HOH . D 4 HOH A 25 525 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAI WOK . . . B 2 12.352 -30.418 -0.283 1 35.46 ? NAI WOK 401 A 1 HETATM 2 C CAD WOK . . . B 2 12.874 -31.034 0.764 1 42.03 ? CAD WOK 401 A 1 HETATM 3 C CAE WOK . . . B 2 12.283 -31.267 1.985 1 44.4 ? CAE WOK 401 A 1 HETATM 4 C CAF WOK . . . B 2 13.043 -31.941 2.987 1 59.57 ? CAF WOK 401 A 1 HETATM 5 F FBS WOK . . . B 2 12.58 -32.173 4.098 1 49.56 ? FBS WOK 401 A 1 HETATM 6 C CAA WOK . . . B 2 14.353 -32.387 2.745 1 50.24 ? CAA WOK 401 A 1 HETATM 7 C CAB WOK . . . B 2 14.874 -32.128 1.477 1 47.24 ? CAB WOK 401 A 1 HETATM 8 C CAC WOK . . . B 2 14.141 -31.476 0.542 1 45.68 ? CAC WOK 401 A 1 HETATM 9 S SAG WOK . . . B 2 14.654 -30.961 -1.124 1 39.78 ? SAG WOK 401 A 1 HETATM 10 C CAH WOK . . . B 2 13.038 -30.279 -1.443 1 39.46 ? CAH WOK 401 A 1 HETATM 11 C C WOK . . . B 2 12.525 -29.653 -2.535 1 33.58 ? C WOK 401 A 1 HETATM 12 O O WOK . . . B 2 11.492 -30.212 -3.049 1 33.22 ? O WOK 401 A 1 HETATM 13 C CA WOK . . . B 2 12.594 -28.084 -2.321 1 33.9 ? CA WOK 401 A 1 HETATM 14 C CB WOK . . . B 2 12.079 -27.279 -3.502 1 37.07 ? CB WOK 401 A 1 HETATM 15 C CG WOK . . . B 2 11.733 -25.813 -3.162 1 33.07 ? CG WOK 401 A 1 HETATM 16 C CD1 WOK . . . B 2 10.575 -25.705 -2.173 1 39.3 ? CD1 WOK 401 A 1 HETATM 17 C CAP WOK . . . B 2 10.012 -24.326 -2.525 1 36.32 ? CAP WOK 401 A 1 HETATM 18 N NAQ WOK . . . B 2 10.46 -24.104 -4.003 1 31.99 ? NAQ WOK 401 A 1 HETATM 19 C CD2 WOK . . . B 2 11.316 -25.087 -4.326 1 34.01 ? CD2 WOK 401 A 1 HETATM 20 O OAS WOK . . . B 2 11.929 -25.183 -5.418 1 31.95 ? OAS WOK 401 A 1 HETATM 21 N N WOK . . . B 2 13.992 -27.657 -1.996 1 34.63 ? N WOK 401 A 1 HETATM 22 C CAU WOK . . . B 2 14.381 -27.149 -0.788 1 40.55 ? CAU WOK 401 A 1 HETATM 23 O OAW WOK . . . B 2 13.54 -26.965 0.061 1 36.15 ? OAW WOK 401 A 1 HETATM 24 C CAV WOK . . . B 2 15.743 -26.689 -0.576 1 37.11 ? CAV WOK 401 A 1 HETATM 25 C CBA WOK . . . B 2 16.464 -27.583 0.331 1 40.72 ? CBA WOK 401 A 1 HETATM 26 C CBB WOK . . . B 2 17.941 -27.369 0.633 1 42.34 ? CBB WOK 401 A 1 HETATM 27 C CBC WOK . . . B 2 18.701 -26.298 -0.214 1 41 ? CBC WOK 401 A 1 HETATM 28 C CBD WOK . . . B 2 18.713 -28.73 0.783 1 44.91 ? CBD WOK 401 A 1 HETATM 29 C CAZ WOK . . . B 2 16.835 -26.911 1.64 1 38.88 ? CAZ WOK 401 A 1 HETATM 30 C CAY WOK . . . B 2 16.376 -25.524 1.623 1 37.66 ? CAY WOK 401 A 1 HETATM 31 N NAX WOK . . . B 2 15.814 -25.429 0.134 1 36.19 ? NAX WOK 401 A 1 HETATM 32 C CBE WOK . . . B 2 15.321 -24.365 -0.487 1 38.15 ? CBE WOK 401 A 1 HETATM 33 O OBG WOK . . . B 2 14.89 -24.438 -1.649 1 38.18 ? OBG WOK 401 A 1 HETATM 34 C CBF WOK . . . B 2 15.262 -23.074 0.387 1 35.37 ? CBF WOK 401 A 1 HETATM 35 C CBO WOK . . . B 2 13.844 -22.508 0.661 1 40.56 ? CBO WOK 401 A 1 HETATM 36 C CBQ WOK . . . B 2 13.05 -22.016 -0.581 1 34.76 ? CBQ WOK 401 A 1 HETATM 37 C CBR WOK . . . B 2 13.956 -21.293 1.598 1 40.94 ? CBR WOK 401 A 1 HETATM 38 C CBP WOK . . . B 2 13.02 -23.635 1.35 1 43.87 ? CBP WOK 401 A 1 HETATM 39 N NBH WOK . . . B 2 16.075 -22.07 -0.281 1 36.23 ? NBH WOK 401 A 1 HETATM 40 C CBI WOK . . . B 2 17.26 -21.675 0.269 1 45.11 ? CBI WOK 401 A 1 HETATM 41 O OBN WOK . . . B 2 17.535 -21.888 1.468 1 51.77 ? OBN WOK 401 A 1 HETATM 42 C CBJ WOK . . . B 2 18.131 -20.689 -0.593 1 54.99 ? CBJ WOK 401 A 1 HETATM 43 F FBL WOK . . . B 2 17.698 -19.472 -0.444 1 59.81 ? FBL WOK 401 A 1 HETATM 44 F FBM WOK . . . B 2 18.063 -21.037 -1.755 1 50.91 ? FBM WOK 401 A 1 HETATM 45 F FBK WOK . . . B 2 19.454 -20.74 -0.267 1 68.51 ? FBK WOK 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 45 #