data_8UH6
#
_model_server_result.job_id            XWxVRvSb-lF40a9cybgKPg 
_model_server_result.datetime_utc      '2024-11-17 03:36:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8uh6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    8UH6 
#
_exptl.entry_id    8UH6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              976.512 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5P)-3-(carboxymethoxy)-4-chloro-5-(3-{[(4S)-1-({3-[(4-{1-[(3R)-2,6-dioxopiperidin-3-yl]-3-methyl-2-oxo-2,3-dihydro-1H-benzimidazol-5-yl}piperidine-1-carbonyl)amino]phenyl}methanesulfonyl)-2,2-dimethylpiperidin-4-yl]amino}phenyl)thiophene-2-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8UH6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UH6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 332 B CYS 323 1_555 E ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc2 B SG CYS 335 B CYS 326 1_555 E ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc3 B SG CYS 400 B CYS 391 1_555 E ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc4 B SG CYS 403 B CYS 394 1_555 E ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
#
_chem_comp.formula           'C46 H50 Cl N7 O11 S2' 
_chem_comp.formula_weight    976.512 
_chem_comp.id                WO8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5P)-3-(carboxymethoxy)-4-chloro-5-(3-{[(4S)-1-({3-[(4-{1-[(3R)-2,6-dioxopiperidin-3-yl]-3-methyl-2-oxo-2,3-dihydro-1H-benzimidazol-5-yl}piperidine-1-carbonyl)amino]phenyl}methanesulfonyl)-2,2-dimethylpiperidin-4-yl]amino}phenyl)thiophene-2-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N38 C36 WO8 sing 374 n n 
N38 C39 WO8 sing 375 n n 
O37 C36 WO8 doub 376 n n 
O40 C39 WO8 doub 377 n n 
C36 C35 WO8 sing 378 n n 
C39 C41 WO8 sing 379 n n 
C41 C42 WO8 sing 380 n n 
C35 C42 WO8 sing 381 n n 
C35 N34 WO8 sing 382 n n 
O44 C43 WO8 doub 383 n n 
N34 C43 WO8 sing 384 n n 
N34 C31 WO8 sing 385 n n 
C43 N29 WO8 sing 386 n n 
N29 C30 WO8 sing 387 n n 
N29 C28 WO8 sing 388 n n 
C31 C32 WO8 doub 389 n y 
C31 C28 WO8 sing 390 n y 
C32 C33 WO8 sing 391 n y 
C28 C27 WO8 doub 392 n y 
C33 C26 WO8 doub 393 n y 
C27 C26 WO8 sing 394 n y 
C26 C23 WO8 sing 395 n n 
C23 C24 WO8 sing 396 n n 
C23 C22 WO8 sing 397 n n 
C24 C25 WO8 sing 398 n n 
C22 C21 WO8 sing 399 n n 
C11 C10 WO8 sing 400 n n 
C14 C15 WO8 sing 401 n n 
C14 S13 WO8 sing 402 n n 
C15 C16 WO8 doub 403 n y 
C15 C48 WO8 sing 404 n y 
C16 C17 WO8 sing 405 n y 
C48 C47 WO8 doub 406 n y 
C25 N20 WO8 sing 407 n n 
C17 N18 WO8 sing 408 n n 
C17 C46 WO8 doub 409 n y 
C47 C46 WO8 sing 410 n y 
N18 C19 WO8 sing 411 n n 
N20 C19 WO8 sing 412 n n 
N20 C21 WO8 sing 413 n n 
C19 O45 WO8 doub 414 n n 
C53 C10 WO8 sing 415 n n 
C10 N12 WO8 sing 416 n n 
C10 C09 WO8 sing 417 n n 
C55 C54 WO8 doub 418 n y 
C55 C56 WO8 sing 419 n y 
N12 S13 WO8 sing 420 n n 
N12 C51 WO8 sing 421 n n 
S13 O50 WO8 doub 422 n n 
S13 O49 WO8 doub 423 n n 
C54 C06 WO8 sing 424 n y 
C51 C52 WO8 sing 425 n n 
C09 C08 WO8 sing 426 n n 
C56 C04 WO8 doub 427 n y 
C08 C52 WO8 sing 428 n n 
C08 N07 WO8 sing 429 n n 
C06 N07 WO8 sing 430 n n 
C06 C05 WO8 doub 431 n y 
C04 C05 WO8 sing 432 n y 
C04 C03 WO8 sing 433 n n 
C03 S57 WO8 sing 434 n y 
C03 C02 WO8 doub 435 n y 
S57 C58 WO8 sing 436 n y 
C02 CL01 WO8 sing 437 n n 
C02 C62 WO8 sing 438 n y 
O60 C59 WO8 doub 439 n n 
C58 C62 WO8 doub 440 n y 
C58 C59 WO8 sing 441 n n 
C62 O63 WO8 sing 442 n n 
C59 O61 WO8 sing 443 n n 
O63 C64 WO8 sing 444 n n 
C64 C65 WO8 sing 445 n n 
C65 O67 WO8 doub 446 n n 
C65 O66 WO8 sing 447 n n 
C21 H1 WO8 sing 448 n n 
C21 H2 WO8 sing 449 n n 
C22 H3 WO8 sing 450 n n 
C22 H4 WO8 sing 451 n n 
C24 H5 WO8 sing 452 n n 
C24 H6 WO8 sing 453 n n 
C05 H7 WO8 sing 454 n n 
C08 H8 WO8 sing 455 n n 
C09 H9 WO8 sing 456 n n 
C09 H10 WO8 sing 457 n n 
C11 H11 WO8 sing 458 n n 
C11 H12 WO8 sing 459 n n 
C11 H13 WO8 sing 460 n n 
C14 H14 WO8 sing 461 n n 
C14 H15 WO8 sing 462 n n 
C16 H16 WO8 sing 463 n n 
C23 H17 WO8 sing 464 n n 
C25 H18 WO8 sing 465 n n 
C25 H19 WO8 sing 466 n n 
C27 H20 WO8 sing 467 n n 
C30 H21 WO8 sing 468 n n 
C30 H22 WO8 sing 469 n n 
C30 H23 WO8 sing 470 n n 
C32 H24 WO8 sing 471 n n 
C33 H25 WO8 sing 472 n n 
C35 H26 WO8 sing 473 n n 
C41 H27 WO8 sing 474 n n 
C41 H28 WO8 sing 475 n n 
C42 H29 WO8 sing 476 n n 
C42 H30 WO8 sing 477 n n 
C46 H31 WO8 sing 478 n n 
C47 H32 WO8 sing 479 n n 
C48 H33 WO8 sing 480 n n 
C51 H34 WO8 sing 481 n n 
C51 H35 WO8 sing 482 n n 
C52 H36 WO8 sing 483 n n 
C52 H37 WO8 sing 484 n n 
C53 H38 WO8 sing 485 n n 
C53 H39 WO8 sing 486 n n 
C53 H40 WO8 sing 487 n n 
C54 H41 WO8 sing 488 n n 
C55 H42 WO8 sing 489 n n 
C56 H43 WO8 sing 490 n n 
C64 H44 WO8 sing 491 n n 
C64 H45 WO8 sing 492 n n 
N07 H46 WO8 sing 493 n n 
N18 H47 WO8 sing 494 n n 
N38 H48 WO8 sing 495 n n 
O61 H49 WO8 sing 496 n n 
O66 H50 WO8 sing 497 n n 
#
_atom_sites.entry_id                     8UH6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 WO8 B 1 501 301 WO8 LIG . 
E 5 ZN B 1 502 1427 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 WO8 . . . D 4 148.482 160.296 204.29 1 35.4 ? C10 WO8 501 B 1 
HETATM 2 N N12 WO8 . . . D 4 148.674 158.88 204.762 1 30.34 ? N12 WO8 501 B 1 
HETATM 3 C C15 WO8 . . . D 4 146.113 155.891 203.122 1 40.41 ? C15 WO8 501 B 1 
HETATM 4 C C17 WO8 . . . D 4 146.124 153.477 203.202 1 38.19 ? C17 WO8 501 B 1 
HETATM 5 C C21 WO8 . . . D 4 150.271 150.286 203.765 1 33.18 ? C21 WO8 501 B 1 
HETATM 6 C C22 WO8 . . . D 4 150.891 149.73 202.484 1 31.61 ? C22 WO8 501 B 1 
HETATM 7 C C24 WO8 . . . D 4 148.619 148.753 201.917 1 34.47 ? C24 WO8 501 B 1 
HETATM 8 C C26 WO8 . . . D 4 150.711 148.998 200.421 1 35.08 ? C26 WO8 501 B 1 
HETATM 9 C C28 WO8 . . . D 4 151.15 150.583 198.654 1 27.16 ? C28 WO8 501 B 1 
HETATM 10 C C02 WO8 . . . D 4 150.265 166.841 208.98 1 36.37 ? C02 WO8 501 B 1 
HETATM 11 C C03 WO8 . . . D 4 151.108 166.795 207.854 1 33.78 ? C03 WO8 501 B 1 
HETATM 12 C C04 WO8 . . . D 4 151.205 165.707 206.788 1 36.12 ? C04 WO8 501 B 1 
HETATM 13 C C05 WO8 . . . D 4 151.117 164.365 207.129 1 28.22 ? C05 WO8 501 B 1 
HETATM 14 C C06 WO8 . . . D 4 151.212 163.395 206.142 1 27.46 ? C06 WO8 501 B 1 
HETATM 15 C C08 WO8 . . . D 4 150.557 161.001 205.498 1 22.98 ? C08 WO8 501 B 1 
HETATM 16 C C09 WO8 . . . D 4 149.115 161.302 205.256 1 29.91 ? C09 WO8 501 B 1 
HETATM 17 C C11 WO8 . . . D 4 149.131 160.448 202.918 1 35.27 ? C11 WO8 501 B 1 
HETATM 18 C C14 WO8 . . . D 4 146.908 157.223 203.068 1 40.63 ? C14 WO8 501 B 1 
HETATM 19 C C16 WO8 . . . D 4 146.807 154.685 203.144 1 36.13 ? C16 WO8 501 B 1 
HETATM 20 C C19 WO8 . . . D 4 148.27 152.012 203.516 1 31.03 ? C19 WO8 501 B 1 
HETATM 21 C C23 WO8 . . . D 4 150.093 148.688 201.789 1 29.36 ? C23 WO8 501 B 1 
HETATM 22 C C25 WO8 . . . D 4 148.091 149.388 203.201 1 33.21 ? C25 WO8 501 B 1 
HETATM 23 C C27 WO8 . . . D 4 150.603 150.298 199.882 1 28.62 ? C27 WO8 501 B 1 
HETATM 24 C C30 WO8 . . . D 4 150.688 153.13 198.115 1 30.29 ? C30 WO8 501 B 1 
HETATM 25 C C31 WO8 . . . D 4 151.844 149.535 197.891 1 21.63 ? C31 WO8 501 B 1 
HETATM 26 C C32 WO8 . . . D 4 151.937 148.267 198.422 1 20.03 ? C32 WO8 501 B 1 
HETATM 27 C C33 WO8 . . . D 4 151.38 147.973 199.682 1 32.45 ? C33 WO8 501 B 1 
HETATM 28 C C35 WO8 . . . D 4 153.047 149.517 195.543 1 22.35 ? C35 WO8 501 B 1 
HETATM 29 C C36 WO8 . . . D 4 153.285 150.243 194.215 1 25.5 ? C36 WO8 501 B 1 
HETATM 30 C C39 WO8 . . . D 4 155.718 149.226 194.247 1 27.65 ? C39 WO8 501 B 1 
HETATM 31 C C41 WO8 . . . D 4 155.182 148.342 195.36 1 23.72 ? C41 WO8 501 B 1 
HETATM 32 C C42 WO8 . . . D 4 154.32 149.174 196.249 1 24.95 ? C42 WO8 501 B 1 
HETATM 33 C C43 WO8 . . . D 4 151.89 151.458 196.71 1 12.58 ? C43 WO8 501 B 1 
HETATM 34 C C46 WO8 . . . D 4 144.737 153.483 203.226 1 41.04 ? C46 WO8 501 B 1 
HETATM 35 C C47 WO8 . . . D 4 144.039 154.687 203.202 1 40.53 ? C47 WO8 501 B 1 
HETATM 36 C C48 WO8 . . . D 4 144.729 155.894 203.151 1 36.16 ? C48 WO8 501 B 1 
HETATM 37 C C51 WO8 . . . D 4 150.107 158.579 205.068 1 30.69 ? C51 WO8 501 B 1 
HETATM 38 C C52 WO8 . . . D 4 150.74 159.602 206.015 1 20.25 ? C52 WO8 501 B 1 
HETATM 39 C C53 WO8 . . . D 4 147 160.638 204.166 1 30.76 ? C53 WO8 501 B 1 
HETATM 40 C C54 WO8 . . . D 4 151.406 163.769 204.822 1 34.5 ? C54 WO8 501 B 1 
HETATM 41 C C55 WO8 . . . D 4 151.499 165.11 204.483 1 31.33 ? C55 WO8 501 B 1 
HETATM 42 C C56 WO8 . . . D 4 151.401 166.076 205.469 1 32.93 ? C56 WO8 501 B 1 
HETATM 43 C C58 WO8 . . . D 4 151.394 168.914 209.293 1 38.13 ? C58 WO8 501 B 1 
HETATM 44 C C59 WO8 . . . D 4 151.802 170.249 209.907 1 40.42 ? C59 WO8 501 B 1 
HETATM 45 C C62 WO8 . . . D 4 150.429 168.017 209.775 1 38.36 ? C62 WO8 501 B 1 
HETATM 46 C C64 WO8 . . . D 4 150.232 167.637 212.072 1 34.83 ? C64 WO8 501 B 1 
HETATM 47 C C65 WO8 . . . D 4 149.09 167.248 213.008 1 31.78 ? C65 WO8 501 B 1 
HETATM 48 N N07 WO8 . . . D 4 151.111 161.983 206.494 1 23.02 ? N07 WO8 501 B 1 
HETATM 49 N N18 WO8 . . . D 4 146.839 152.178 203.223 1 30 ? N18 WO8 501 B 1 
HETATM 50 N N20 WO8 . . . D 4 148.839 150.651 203.506 1 33.26 ? N20 WO8 501 B 1 
HETATM 51 N N29 WO8 . . . D 4 151.225 151.817 197.806 1 24.11 ? N29 WO8 501 B 1 
HETATM 52 N N34 WO8 . . . D 4 152.306 150.185 196.612 1 21.46 ? N34 WO8 501 B 1 
HETATM 53 N N38 WO8 . . . D 4 154.637 150.032 193.634 1 23.65 ? N38 WO8 501 B 1 
HETATM 54 O O37 WO8 . . . D 4 152.459 150.891 193.67 1 27.7 ? O37 WO8 501 B 1 
HETATM 55 O O40 WO8 . . . D 4 156.853 149.266 193.916 1 27 ? O40 WO8 501 B 1 
HETATM 56 O O44 WO8 . . . D 4 152.087 152.268 195.872 1 6.46 ? O44 WO8 501 B 1 
HETATM 57 O O45 WO8 . . . D 4 148.98 152.925 203.766 1 32.62 ? O45 WO8 501 B 1 
HETATM 58 O O49 WO8 . . . D 4 146.313 158.008 205.626 1 41.09 ? O49 WO8 501 B 1 
HETATM 59 O O50 WO8 . . . D 4 147.934 156.461 205.482 1 25.49 ? O50 WO8 501 B 1 
HETATM 60 O O60 WO8 . . . D 4 151.579 171.322 209.286 1 32.14 ? O60 WO8 501 B 1 
HETATM 61 O O61 WO8 . . . D 4 152.361 170.277 211.032 1 35 ? O61 WO8 501 B 1 
HETATM 62 O O63 WO8 . . . D 4 149.691 168.253 210.94 1 34.36 ? O63 WO8 501 B 1 
HETATM 63 O O66 WO8 . . . D 4 149.085 166.115 213.557 1 27.25 ? O66 WO8 501 B 1 
HETATM 64 O O67 WO8 . . . D 4 148.155 168.062 213.231 1 37.11 ? O67 WO8 501 B 1 
HETATM 65 S S13 WO8 . . . D 4 147.451 157.651 204.778 1 15.96 ? S13 WO8 501 B 1 
HETATM 66 S S57 WO8 . . . D 4 152.018 168.218 207.887 1 16.64 ? S57 WO8 501 B 1 
HETATM 67 CL CL01 WO8 . . . D 4 149.096 165.558 209.4 1 32.27 ? CL01 WO8 501 B 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           530 
_model_server_stats.encode_time_ms          29 
_model_server_stats.element_count           67 
#