data_8UHB # _model_server_result.job_id 9CZNjjlUkxPcuEAbElS3qg _model_server_result.datetime_utc '2024-12-22 06:04:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uhb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 8UHB # _exptl.entry_id 8UHB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 218.295 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,4S)-4-[(2S)-2-phenylbutyl]-1,3-oxazolidin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UHB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UHB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 190 A CYS 5 1_555 A SG CYS 363 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 198 A CYS 13 1_555 A SG CYS 273 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 281 A CYS 96 1_555 A SG CYS 367 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 E SG CYS 22 N CYS 22 1_555 E SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 99 N CYS 99 1_555 E SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C13 H18 N2 O' _chem_comp.formula_weight 218.295 _chem_comp.id WV8 _chem_comp.mon_nstd_flag . _chem_comp.name (2R,4S)-4-[(2S)-2-phenylbutyl]-1,3-oxazolidin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 WV8 sing 374 n n C2 C3 WV8 sing 375 n n C12 C13 WV8 doub 376 n y C12 C11 WV8 sing 377 n y C13 C14 WV8 sing 378 n y C3 C11 WV8 sing 379 n n C3 C4 WV8 sing 380 n n C11 C16 WV8 doub 381 n y C4 C5 WV8 sing 382 n n C14 C15 WV8 doub 383 n y C5 C6 WV8 sing 384 n n C5 N10 WV8 sing 385 n n C16 C15 WV8 sing 386 n y C6 O7 WV8 sing 387 n n N10 C8 WV8 doub 388 n n O7 C8 WV8 sing 389 n n C8 N9 WV8 sing 390 n n C5 H5 WV8 sing 391 n n C6 H6A WV8 sing 392 n n C6 H6B WV8 sing 393 n n C15 H15 WV8 sing 394 n n C14 H14 WV8 sing 395 n n C12 H12 WV8 sing 396 n n C3 H3 WV8 sing 397 n n C16 H16 WV8 sing 398 n n C1 H1A WV8 sing 399 n n C1 H1B WV8 sing 400 n n C1 H1C WV8 sing 401 n n C13 H13 WV8 sing 402 n n C2 H2A WV8 sing 403 n n C2 H2B WV8 sing 404 n n C4 H4A WV8 sing 405 n n C4 H4B WV8 sing 406 n n N9 H9A WV8 sing 407 n n N9 H9B WV8 sing 408 n n # _atom_sites.entry_id 8UHB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id WV8 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id WV8 _pdbx_nonpoly_scheme.auth_mon_id RO9 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 WV8 . . . F 6 132.706 134.227 99.856 1 32.43 ? C5 WV8 401 A 1 HETATM 2 C C6 WV8 . . . F 6 131.43 133.726 100.535 1 32.43 ? C6 WV8 401 A 1 HETATM 3 C C15 WV8 . . . F 6 137.364 131.398 100.308 1 32.43 ? C15 WV8 401 A 1 HETATM 4 C C14 WV8 . . . F 6 137.745 130.503 99.332 1 32.43 ? C14 WV8 401 A 1 HETATM 5 C C12 WV8 . . . F 6 136.222 131.541 97.802 1 32.43 ? C12 WV8 401 A 1 HETATM 6 C C11 WV8 . . . F 6 135.829 132.449 98.776 1 32.43 ? C11 WV8 401 A 1 HETATM 7 C C8 WV8 . . . F 6 132.732 134.76 102.013 1 32.43 ? C8 WV8 401 A 1 HETATM 8 C C3 WV8 . . . F 6 134.77 133.495 98.487 1 32.43 ? C3 WV8 401 A 1 HETATM 9 C C16 WV8 . . . F 6 136.413 132.366 100.034 1 32.43 ? C16 WV8 401 A 1 HETATM 10 C C1 WV8 . . . F 6 133.847 135.034 96.642 1 32.43 ? C1 WV8 401 A 1 HETATM 11 C C13 WV8 . . . F 6 137.173 130.574 98.08 1 32.43 ? C13 WV8 401 A 1 HETATM 12 C C2 WV8 . . . F 6 134.672 133.812 96.982 1 32.43 ? C2 WV8 401 A 1 HETATM 13 C C4 WV8 . . . F 6 133.401 133.13 99.076 1 32.43 ? C4 WV8 401 A 1 HETATM 14 N N10 WV8 . . . F 6 133.523 134.695 100.995 1 32.43 ? N10 WV8 401 A 1 HETATM 15 N N9 WV8 . . . F 6 133.012 135.237 103.218 1 32.43 ? N9 WV8 401 A 1 HETATM 16 O O7 WV8 . . . F 6 131.476 134.304 101.865 1 32.43 ? O7 WV8 401 A 1 HETATM 17 H H5 WV8 . . . F 6 132.508 134.998 99.287 1 32.43 ? H5 WV8 401 A 1 HETATM 18 H H6A WV8 . . . F 6 131.4 132.752 100.627 1 32.43 ? H6A WV8 401 A 1 HETATM 19 H H6B WV8 . . . F 6 130.625 134.022 100.067 1 32.43 ? H6B WV8 401 A 1 HETATM 20 H H15 WV8 . . . F 6 137.768 131.35 101.199 1 32.43 ? H15 WV8 401 A 1 HETATM 21 H H14 WV8 . . . F 6 138.417 129.819 99.528 1 32.43 ? H14 WV8 401 A 1 HETATM 22 H H12 WV8 . . . F 6 135.835 131.564 96.903 1 32.43 ? H12 WV8 401 A 1 HETATM 23 H H3 WV8 . . . F 6 135.057 134.323 98.921 1 32.43 ? H3 WV8 401 A 1 HETATM 24 H H16 WV8 . . . F 6 136.158 132.992 100.742 1 32.43 ? H16 WV8 401 A 1 HETATM 25 H H1A WV8 . . . F 6 133.672 135.052 95.679 1 32.43 ? H1A WV8 401 A 1 HETATM 26 H H1B WV8 . . . F 6 134.321 135.862 96.858 1 32.43 ? H1B WV8 401 A 1 HETATM 27 H H1C WV8 . . . F 6 132.981 135.033 97.098 1 32.43 ? H1C WV8 401 A 1 HETATM 28 H H13 WV8 . . . F 6 137.441 129.94 97.383 1 32.43 ? H13 WV8 401 A 1 HETATM 29 H H2A WV8 . . . F 6 135.574 133.947 96.626 1 32.43 ? H2A WV8 401 A 1 HETATM 30 H H2B WV8 . . . F 6 134.298 133.043 96.504 1 32.43 ? H2B WV8 401 A 1 HETATM 31 H H4A WV8 . . . F 6 133.475 132.35 99.662 1 32.43 ? H4A WV8 401 A 1 HETATM 32 H H4B WV8 . . . F 6 132.812 132.858 98.344 1 32.43 ? H4B WV8 401 A 1 HETATM 33 H H9B WV8 . . . F 6 132.396 135.238 103.85 1 32.43 ? H9B WV8 401 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #