data_8UHE # _model_server_result.job_id mks9cMb-CfWQA4MpPTqgoQ _model_server_result.datetime_utc '2025-03-06 10:20:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uhe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":801}' # _entry.id 8UHE # _exptl.entry_id 8UHE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 586.678 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'mesobiliverdin IX(alpha)' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UHE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UHE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 19-meric _pdbx_struct_assembly.oligomeric_count 19 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 V N N ? 9 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 78 A CYS 78 1_555 T CAC CYC . A CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? covale ? covale2 B C GLY 70 B GLY 70 1_555 B N MEN 71 B MEN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 B C MEN 71 B MEN 71 1_555 B N MET 72 B MET 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B SG CYS 81 B CYS 81 1_555 U CAC CYC . B CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? covale ? covale5 D C GLY 70 D GLY 70 1_555 D N MEN 71 D MEN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 D C MEN 71 D MEN 71 1_555 D N MET 72 D MET 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 D SG CYS 81 D CYS 81 1_555 W CAC CYC . D CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? covale ? covale8 E SG CYS 78 E CYS 78 1_555 X CAC CYC . E CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? covale ? covale9 F C GLY 70 F GLY 70 1_555 F N MEN 71 F MEN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale10 F C MEN 71 F MEN 71 1_555 F N MET 72 F MET 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 F SG CYS 81 F CYS 81 1_555 Y CAC CYC . F CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? covale ? covale12 G SG CYS 78 G CYS 78 1_555 Z CAC CYC . G CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? covale ? covale13 H C GLY 70 H GLY 70 1_555 H N MEN 71 H MEN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale14 H C MEN 71 H MEN 71 1_555 H N MET 72 H MET 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 H SG CYS 81 H CYS 81 1_555 AA CAC CYC . H CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? covale ? covale16 I SG CYS 78 I CYS 78 1_555 BA CAC CYC . I CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? covale ? covale17 J C GLY 71 J GLY 71 1_555 J N MEN 72 J MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 J C MEN 72 J MEN 72 1_555 J N ALA 73 J ALA 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 J SG CYS 82 J CYS 82 1_555 CA CAC CYC . J CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? covale ? covale20 L C GLY 70 L GLY 70 1_555 L N MEN 71 L MEN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 L C MEN 71 L MEN 71 1_555 L N MET 72 L MET 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale22 L SG CYS 81 L CYS 81 1_555 FA CAC CYC . L CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale23 M SG CYS 78 M CYS 78 1_555 GA CAC CYC . M CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? covale ? covale24 N C GLY 70 N GLY 70 1_555 N N MEN 71 N MEN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale25 N C MEN 71 N MEN 71 1_555 N N MET 72 N MET 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale26 N SG CYS 81 N CYS 81 1_555 HA CAC CYC . N CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? covale ? covale27 O SG CYS 78 O CYS 78 1_555 IA CAC CYC . O CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? covale ? covale28 P C GLY 70 P GLY 70 1_555 P N MEN 71 P MEN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale29 P C MEN 71 P MEN 71 1_555 P N MET 72 P MET 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale30 P SG CYS 81 P CYS 81 1_555 JA CAC CYC . P CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? covale ? covale31 Q SG CYS 78 Q CYS 78 1_555 KA CAC CYC . Q CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? covale ? covale32 R C GLY 70 R GLY 70 1_555 R N MEN 71 R MEN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale33 R C MEN 71 R MEN 71 1_555 R N MET 72 R MET 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale34 R SG CYS 81 R CYS 81 1_555 LA CAC CYC . R CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? # _chem_comp.formula 'C33 H38 N4 O6' _chem_comp.formula_weight 586.678 _chem_comp.id M1V _chem_comp.mon_nstd_flag . _chem_comp.name 'mesobiliverdin IX(alpha)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBD CAD M1V sing 302 n n CAD C3D M1V sing 303 n n OD C4D M1V doub 304 n n C3D C4D M1V sing 305 n n C3D C2D M1V doub 306 n n C4D ND M1V sing 307 n n C2D CMD M1V sing 308 n n C2D C1D M1V sing 309 n n ND C1D M1V sing 310 n n C1D CHC M1V doub 311 z n CMC C3C M1V sing 312 n n CHC C4C M1V sing 313 n n C3C C4C M1V sing 314 n n C3C C2C M1V doub 315 n n O2C CGC M1V doub 316 n n C4C NC M1V doub 317 n n CBC CGC M1V sing 318 n n CBC CAC M1V sing 319 n n C2C CAC M1V sing 320 n n C2C C1C M1V sing 321 n n CGC O1C M1V sing 322 n n NC C1C M1V sing 323 n n C1C CHB M1V doub 324 z n CHB C4B M1V sing 325 n n NB C4B M1V sing 326 n y NB C1B M1V sing 327 n y C4B C3B M1V doub 328 n y O1B CGB M1V doub 329 n n O2B CGB M1V sing 330 n n CGB CBB M1V sing 331 n n C1B CHA M1V sing 332 n n C1B C2B M1V doub 333 n y CHA C4A M1V doub 334 z n C3B CAB M1V sing 335 n n C3B C2B M1V sing 336 n y CBA CAA M1V sing 337 n n CAA C3A M1V sing 338 n n CAB CBB M1V sing 339 n n C2B CMB M1V sing 340 n n C4A C3A M1V sing 341 n n C4A NA M1V sing 342 n n C3A C2A M1V doub 343 n n NA C1A M1V sing 344 n n C2A C1A M1V sing 345 n n C2A CMA M1V sing 346 n n C1A OA M1V doub 347 n n CMA H1 M1V sing 348 n n CMA H2 M1V sing 349 n n CMA H3 M1V sing 350 n n CAA H4 M1V sing 351 n n CAA H5 M1V sing 352 n n CBA H6 M1V sing 353 n n CBA H7 M1V sing 354 n n CBA H8 M1V sing 355 n n CHA H9 M1V sing 356 n n CMB H11 M1V sing 357 n n CMB H12 M1V sing 358 n n CMB H13 M1V sing 359 n n CAB H14 M1V sing 360 n n CAB H15 M1V sing 361 n n CBB H16 M1V sing 362 n n CBB H17 M1V sing 363 n n O2B H18 M1V sing 364 n n NB H19 M1V sing 365 n n CHB H20 M1V sing 366 n n CAC H22 M1V sing 367 n n CAC H23 M1V sing 368 n n CBC H24 M1V sing 369 n n CBC H25 M1V sing 370 n n O1C H26 M1V sing 371 n n CMC H27 M1V sing 372 n n CMC H28 M1V sing 373 n n CMC H29 M1V sing 374 n n CHC H31 M1V sing 375 n n CMD H33 M1V sing 376 n n CMD H34 M1V sing 377 n n CMD H35 M1V sing 378 n n CAD H36 M1V sing 379 n n CAD H37 M1V sing 380 n n CBD H38 M1V sing 381 n n CBD H39 M1V sing 382 n n CBD H40 M1V sing 383 n n NA H41 M1V sing 384 n n ND H10 M1V sing 385 n n # _atom_sites.entry_id 8UHE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code T 8 CYC A 1 201 201 CYC CYC . U 8 CYC B 1 201 176 CYC CYC . V 9 M1V C 1 201 201 M1V CY2 . W 8 CYC D 1 201 176 CYC CYC . X 8 CYC E 1 201 201 CYC CYC . Y 8 CYC F 1 201 176 CYC CYC . Z 8 CYC G 1 201 201 CYC CYC . AA 8 CYC H 1 201 176 CYC CYC . BA 8 CYC I 1 201 201 CYC CYC . CA 8 CYC J 1 201 201 CYC CYC . DA 9 M1V K 1 801 902 M1V CY2 . EA 10 CL K 1 802 903 CL CL . FA 8 CYC L 1 201 176 CYC CYC . GA 8 CYC M 1 201 201 CYC CYC . HA 8 CYC N 1 201 176 CYC CYC . IA 8 CYC O 1 201 201 CYC CYC . JA 8 CYC P 1 201 176 CYC CYC . KA 8 CYC Q 1 201 201 CYC CYC . LA 8 CYC R 1 201 176 CYC CYC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OA M1V . . . DA 9 90.386 109.962 148.192 1 29.38 ? OA M1V 801 K 1 HETATM 2 C C1A M1V . . . DA 9 89.174 109.956 148.22 1 22.83 ? C1A M1V 801 K 1 HETATM 3 N NA M1V . . . DA 9 88.345 109.579 147.195 1 23.92 ? NA M1V 801 K 1 HETATM 4 C C2A M1V . . . DA 9 88.292 110.343 149.367 1 20.25 ? C2A M1V 801 K 1 HETATM 5 C CMA M1V . . . DA 9 88.785 110.651 150.739 1 24.99 ? CMA M1V 801 K 1 HETATM 6 C C3A M1V . . . DA 9 87.019 110.333 148.898 1 20.41 ? C3A M1V 801 K 1 HETATM 7 C CAA M1V . . . DA 9 85.846 111.061 149.482 1 21.79 ? CAA M1V 801 K 1 HETATM 8 C CBA M1V . . . DA 9 85.114 110.263 150.544 1 20.8 ? CBA M1V 801 K 1 HETATM 9 C C4A M1V . . . DA 9 87.034 109.494 147.665 1 21.14 ? C4A M1V 801 K 1 HETATM 10 C CHA M1V . . . DA 9 85.989 108.768 147.113 1 20.78 ? CHA M1V 801 K 1 HETATM 11 C C1B M1V . . . DA 9 85.66 108.405 145.802 1 21.47 ? C1B M1V 801 K 1 HETATM 12 C C2B M1V . . . DA 9 84.336 108.234 145.282 1 20.64 ? C2B M1V 801 K 1 HETATM 13 C CMB M1V . . . DA 9 83.068 108.412 146.065 1 22.22 ? CMB M1V 801 K 1 HETATM 14 C C3B M1V . . . DA 9 84.437 107.88 143.961 1 18.85 ? C3B M1V 801 K 1 HETATM 15 C CAB M1V . . . DA 9 83.3 107.609 143.018 1 18.56 ? CAB M1V 801 K 1 HETATM 16 C CBB M1V . . . DA 9 83.605 106.679 141.848 1 28.53 ? CBB M1V 801 K 1 HETATM 17 C CGB M1V . . . DA 9 82.504 106.691 140.792 1 30.8 ? CGB M1V 801 K 1 HETATM 18 O O2B M1V . . . DA 9 81.887 105.63 140.57 1 27.25 ? O2B M1V 801 K 1 HETATM 19 O O1B M1V . . . DA 9 82.275 107.772 140.208 1 24.32 ? O1B M1V 801 K 1 HETATM 20 N NB M1V . . . DA 9 86.528 108.15 144.766 1 19.29 ? NB M1V 801 K 1 HETATM 21 C C4B M1V . . . DA 9 85.826 107.825 143.628 1 17.88 ? C4B M1V 801 K 1 HETATM 22 C CHB M1V . . . DA 9 86.362 107.504 142.379 1 18.53 ? CHB M1V 801 K 1 HETATM 23 C C1C M1V . . . DA 9 87.622 107.255 141.888 1 13.93 ? C1C M1V 801 K 1 HETATM 24 C C2C M1V . . . DA 9 87.933 106.969 140.497 1 12.83 ? C2C M1V 801 K 1 HETATM 25 C CAC M1V . . . DA 9 87.022 106.441 139.433 1 11.76 ? CAC M1V 801 K 1 HETATM 26 C CBC M1V . . . DA 9 87.184 104.951 139.162 1 25.54 ? CBC M1V 801 K 1 HETATM 27 C CGC M1V . . . DA 9 86.623 103.987 140.185 1 16.19 ? CGC M1V 801 K 1 HETATM 28 O O2C M1V . . . DA 9 85.41 104.069 140.467 1 23.36 ? O2C M1V 801 K 1 HETATM 29 O O1C M1V . . . DA 9 87.399 103.141 140.676 1 23.06 ? O1C M1V 801 K 1 HETATM 30 C C3C M1V . . . DA 9 89.252 107.279 140.368 1 19.7 ? C3C M1V 801 K 1 HETATM 31 C CMC M1V . . . DA 9 90.028 107.323 139.084 1 15.87 ? CMC M1V 801 K 1 HETATM 32 N NC M1V . . . DA 9 88.774 107.256 142.615 1 14.2 ? NC M1V 801 K 1 HETATM 33 C C4C M1V . . . DA 9 89.75 107.572 141.706 1 17.47 ? C4C M1V 801 K 1 HETATM 34 C CHC M1V . . . DA 9 90.98 108.118 142.043 1 21 ? CHC M1V 801 K 1 HETATM 35 C C1D M1V . . . DA 9 92.277 107.652 141.852 1 18.48 ? C1D M1V 801 K 1 HETATM 36 C C2D M1V . . . DA 9 93.334 107.522 142.861 1 17.08 ? C2D M1V 801 K 1 HETATM 37 C CMD M1V . . . DA 9 93.101 107.618 144.34 1 21.78 ? CMD M1V 801 K 1 HETATM 38 N ND M1V . . . DA 9 92.857 107.266 140.643 1 20.74 ? ND M1V 801 K 1 HETATM 39 C C4D M1V . . . DA 9 94.217 107.205 140.777 1 22.24 ? C4D M1V 801 K 1 HETATM 40 O OD M1V . . . DA 9 95.012 107.07 139.873 1 18.16 ? OD M1V 801 K 1 HETATM 41 C C3D M1V . . . DA 9 94.501 107.306 142.226 1 18.31 ? C3D M1V 801 K 1 HETATM 42 C CAD M1V . . . DA 9 95.89 107.165 142.758 1 13.97 ? CAD M1V 801 K 1 HETATM 43 C CBD M1V . . . DA 9 96.612 108.498 142.817 1 13.5 ? CBD M1V 801 K 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #