data_8UJF # _model_server_result.job_id PYOYeE2_xUw2efV8fol0SA _model_server_result.datetime_utc '2024-11-23 07:40:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ujf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":702}' # _entry.id 8UJF # _exptl.entry_id 8UJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UJF _cell.length_a 66.233 _cell.length_b 123.693 _cell.length_c 165.724 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 168 1_555 A SG CYS 337 A CYS 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 250 A CYS 322 1_555 A SG CYS 334 A CYS 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 328 A CYS 400 1_555 A SG CYS 404 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 440 A CYS 512 1_555 A SG CYS 458 A CYS 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 484 A CYS 556 1_555 A SG CYS 494 A CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 518 A CYS 590 1_555 A SG CYS 531 A CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 B SG CYS 96 B CYS 168 1_555 B SG CYS 337 B CYS 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 250 B CYS 322 1_555 B SG CYS 334 B CYS 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 B SG CYS 328 B CYS 400 1_555 B SG CYS 404 B CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf10 B SG CYS 440 B CYS 512 1_555 B SG CYS 458 B CYS 530 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf11 B SG CYS 484 B CYS 556 1_555 B SG CYS 494 B CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 B SG CYS 518 B CYS 590 1_555 B SG CYS 531 B CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OD2 ASP 204 A ASP 276 1_555 E MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc2 A NE2 HIS 206 A HIS 278 1_555 E MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc3 A NE2 HIS 261 A HIS 333 1_555 F MN MN . A MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc4 A OE1 GLU 264 A GLU 336 1_555 F MN MN . A MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc5 A OE2 GLU 264 A GLU 336 1_555 F MN MN . A MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc6 A NE2 HIS 342 A HIS 414 1_555 E MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc7 D O3A UDP . A UDP 701 1_555 E MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc8 D PB UDP . A UDP 701 1_555 E MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc9 D O1B UDP . A UDP 701 1_555 E MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc10 D O2B UDP . A UDP 701 1_555 E MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc11 F MN MN . A MN 703 1_555 K O HOH . A HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc12 F MN MN . A MN 703 1_555 K O HOH . A HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc13 B OD2 ASP 204 B ASP 276 1_555 I MN MN . B MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc14 B NE2 HIS 206 B HIS 278 1_555 I MN MN . B MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc15 B NE2 HIS 261 B HIS 333 1_555 J MN MN . B MN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc16 B OE1 GLU 264 B GLU 336 1_555 J MN MN . B MN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc17 B OE2 GLU 264 B GLU 336 1_555 J MN MN . B MN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc18 B NE2 HIS 342 B HIS 414 1_555 I MN MN . B MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc19 G O1A UDP . B UDP 701 1_555 I MN MN . B MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc20 G O1B UDP . B UDP 701 1_555 I MN MN . B MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc21 G O2B UDP . B UDP 701 1_555 I MN MN . B MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc22 I MN MN . B MN 703 1_555 L O HOH . B HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc23 J MN MN . B MN 704 1_555 L O HOH . B HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc24 J MN MN . B MN 704 1_555 L O HOH . B HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8UJF _atom_sites.fract_transf_matrix[1][1] 0.015098 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 UDP A 1 701 701 UDP UDP . E 4 MN A 1 702 1 MN MN . F 4 MN A 1 703 3 MN MN . G 3 UDP B 1 701 701 UDP UDP . H 5 NAG B 1 702 801 NAG NAG . I 4 MN B 1 703 2 MN MN . J 4 MN B 1 704 4 MN MN . K 6 HOH A 1 801 29 HOH HOH . K 6 HOH A 2 802 38 HOH HOH . K 6 HOH A 3 803 33 HOH HOH . K 6 HOH A 4 804 13 HOH HOH . K 6 HOH A 5 805 17 HOH HOH . K 6 HOH A 6 806 16 HOH HOH . K 6 HOH A 7 807 27 HOH HOH . K 6 HOH A 8 808 26 HOH HOH . K 6 HOH A 9 809 32 HOH HOH . K 6 HOH A 10 810 24 HOH HOH . K 6 HOH A 11 811 28 HOH HOH . L 6 HOH B 1 801 31 HOH HOH . L 6 HOH B 2 802 34 HOH HOH . L 6 HOH B 3 803 35 HOH HOH . L 6 HOH B 4 804 36 HOH HOH . L 6 HOH B 5 805 18 HOH HOH . L 6 HOH B 6 806 15 HOH HOH . L 6 HOH B 7 807 40 HOH HOH . L 6 HOH B 8 808 41 HOH HOH . L 6 HOH B 9 809 14 HOH HOH . L 6 HOH B 10 810 19 HOH HOH . L 6 HOH B 11 811 11 HOH HOH . L 6 HOH B 12 812 30 HOH HOH . L 6 HOH B 13 813 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 5 45.835 -15.528 -2.353 0.6 42.61 ? C1 NAG 702 B 1 HETATM 2 C C2 NAG . . . H 5 46.906 -15.689 -3.433 0.6 40.48 ? C2 NAG 702 B 1 HETATM 3 C C3 NAG . . . H 5 46.927 -14.456 -4.332 0.6 42 ? C3 NAG 702 B 1 HETATM 4 C C4 NAG . . . H 5 45.538 -14.19 -4.897 0.6 46.1 ? C4 NAG 702 B 1 HETATM 5 C C5 NAG . . . H 5 44.519 -14.095 -3.765 0.6 53.5 ? C5 NAG 702 B 1 HETATM 6 C C6 NAG . . . H 5 43.097 -13.946 -4.259 0.6 56.87 ? C6 NAG 702 B 1 HETATM 7 C C7 NAG . . . H 5 49.121 -16.776 -3.307 0.6 44.43 ? C7 NAG 702 B 1 HETATM 8 C C8 NAG . . . H 5 48.737 -17.546 -4.538 0.6 51.27 ? C8 NAG 702 B 1 HETATM 9 N N2 NAG . . . H 5 48.213 -15.91 -2.835 0.6 40.94 ? N2 NAG 702 B 1 HETATM 10 O O3 NAG . . . H 5 47.856 -14.651 -5.39 0.6 42.35 ? O3 NAG 702 B 1 HETATM 11 O O4 NAG . . . H 5 45.532 -12.968 -5.625 0.6 53.56 ? O4 NAG 702 B 1 HETATM 12 O O5 NAG . . . H 5 44.562 -15.287 -2.966 0.6 57.56 ? O5 NAG 702 B 1 HETATM 13 O O6 NAG . . . H 5 42.545 -15.19 -4.669 0.6 26.54 ? O6 NAG 702 B 1 HETATM 14 O O7 NAG . . . H 5 50.209 -16.93 -2.763 0.6 33.77 ? O7 NAG 702 B 1 HETATM 15 H H2 NAG . . . H 5 46.68 -16.462 -3.985 0.6 48.58 ? H2 NAG 702 B 1 HETATM 16 H H3 NAG . . . H 5 47.21 -13.686 -3.804 0.6 50.4 ? H3 NAG 702 B 1 HETATM 17 H H4 NAG . . . H 5 45.293 -14.923 -5.493 0.6 55.33 ? H4 NAG 702 B 1 HETATM 18 H H5 NAG . . . H 5 44.741 -13.331 -3.201 0.6 64.2 ? H5 NAG 702 B 1 HETATM 19 H H61 NAG . . . H 5 43.088 -13.33 -5.016 0.6 68.25 ? H61 NAG 702 B 1 HETATM 20 H H62 NAG . . . H 5 42.549 -13.577 -3.54 0.6 68.25 ? H62 NAG 702 B 1 HETATM 21 H H81 NAG . . . H 5 49.505 -18.06 -4.852 0.6 61.52 ? H81 NAG 702 B 1 HETATM 22 H H82 NAG . . . H 5 48.455 -16.924 -5.235 0.6 61.52 ? H82 NAG 702 B 1 HETATM 23 H H83 NAG . . . H 5 48.003 -18.153 -4.326 0.6 61.52 ? H83 NAG 702 B 1 HETATM 24 H HN2 NAG . . . H 5 48.428 -15.429 -2.09 0.6 49.12 ? HN2 NAG 702 B 1 HETATM 25 H HO3 NAG . . . H 5 47.434 -14.587 -6.168 0.6 50.82 ? HO3 NAG 702 B 1 HETATM 26 H HO4 NAG . . . H 5 44.901 -12.995 -6.248 0.6 64.28 ? HO4 NAG 702 B 1 HETATM 27 H HO6 NAG . . . H 5 41.67 -15.191 -4.512 0.6 31.84 ? HO6 NAG 702 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #