data_8UJF
#
_model_server_result.job_id            YDP-ME2d5qbtergzYZ7OWQ 
_model_server_result.datetime_utc      '2024-11-27 00:09:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ujf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":703}' 
#
_entry.id    8UJF 
#
_exptl.entry_id    8UJF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8UJF 
_cell.length_a            66.233 
_cell.length_b            123.693 
_cell.length_c            165.724 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UJF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 A CYS 168 1_555 A SG CYS 337 A CYS 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 250 A CYS 322 1_555 A SG CYS 334 A CYS 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 A SG CYS 328 A CYS 400 1_555 A SG CYS 404 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 A SG CYS 440 A CYS 512 1_555 A SG CYS 458 A CYS 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 A SG CYS 484 A CYS 556 1_555 A SG CYS 494 A CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 A SG CYS 518 A CYS 590 1_555 A SG CYS 531 A CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf7 B SG CYS 96 B CYS 168 1_555 B SG CYS 337 B CYS 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 B SG CYS 250 B CYS 322 1_555 B SG CYS 334 B CYS 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 B SG CYS 328 B CYS 400 1_555 B SG CYS 404 B CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf10 B SG CYS 440 B CYS 512 1_555 B SG CYS 458 B CYS 530 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf11 B SG CYS 484 B CYS 556 1_555 B SG CYS 494 B CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 B SG CYS 518 B CYS 590 1_555 B SG CYS 531 B CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc1 A OD2 ASP 204 A ASP 276 1_555 E MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc2 A NE2 HIS 206 A HIS 278 1_555 E MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc3 A NE2 HIS 261 A HIS 333 1_555 F MN MN . A MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc4 A OE1 GLU 264 A GLU 336 1_555 F MN MN . A MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc5 A OE2 GLU 264 A GLU 336 1_555 F MN MN . A MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc6 A NE2 HIS 342 A HIS 414 1_555 E MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc7 D O3A UDP . A UDP 701 1_555 E MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc8 D PB UDP . A UDP 701 1_555 E MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? 
metalc ? metalc9 D O1B UDP . A UDP 701 1_555 E MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc10 D O2B UDP . A UDP 701 1_555 E MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc11 F MN MN . A MN 703 1_555 K O HOH . A HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc12 F MN MN . A MN 703 1_555 K O HOH . A HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc13 B OD2 ASP 204 B ASP 276 1_555 I MN MN . B MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc14 B NE2 HIS 206 B HIS 278 1_555 I MN MN . B MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc15 B NE2 HIS 261 B HIS 333 1_555 J MN MN . B MN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc16 B OE1 GLU 264 B GLU 336 1_555 J MN MN . B MN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc17 B OE2 GLU 264 B GLU 336 1_555 J MN MN . B MN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc18 B NE2 HIS 342 B HIS 414 1_555 I MN MN . B MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc19 G O1A UDP . B UDP 701 1_555 I MN MN . B MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc20 G O1B UDP . B UDP 701 1_555 I MN MN . B MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc21 G O2B UDP . B UDP 701 1_555 I MN MN . B MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? 
metalc ? metalc22 I MN MN . B MN 703 1_555 L O HOH . B HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc23 J MN MN . B MN 704 1_555 L O HOH . B HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc24 J MN MN . B MN 704 1_555 L O HOH . B HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8UJF 
_atom_sites.fract_transf_matrix[1][1]    0.015098 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008085 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006034 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 UDP A 1 701 701 UDP UDP . 
E 4 MN A 1 702 1 MN MN . 
F 4 MN A 1 703 3 MN MN . 
G 3 UDP B 1 701 701 UDP UDP . 
H 5 NAG B 1 702 801 NAG NAG . 
I 4 MN B 1 703 2 MN MN . 
J 4 MN B 1 704 4 MN MN . 
K 6 HOH A 1 801 29 HOH HOH . 
K 6 HOH A 2 802 38 HOH HOH . 
K 6 HOH A 3 803 33 HOH HOH . 
K 6 HOH A 4 804 13 HOH HOH . 
K 6 HOH A 5 805 17 HOH HOH . 
K 6 HOH A 6 806 16 HOH HOH . 
K 6 HOH A 7 807 27 HOH HOH . 
K 6 HOH A 8 808 26 HOH HOH . 
K 6 HOH A 9 809 32 HOH HOH . 
K 6 HOH A 10 810 24 HOH HOH . 
K 6 HOH A 11 811 28 HOH HOH . 
L 6 HOH B 1 801 31 HOH HOH . 
L 6 HOH B 2 802 34 HOH HOH . 
L 6 HOH B 3 803 35 HOH HOH . 
L 6 HOH B 4 804 36 HOH HOH . 
L 6 HOH B 5 805 18 HOH HOH . 
L 6 HOH B 6 806 15 HOH HOH . 
L 6 HOH B 7 807 40 HOH HOH . 
L 6 HOH B 8 808 41 HOH HOH . 
L 6 HOH B 9 809 14 HOH HOH . 
L 6 HOH B 10 810 19 HOH HOH . 
L 6 HOH B 11 811 11 HOH HOH . 
L 6 HOH B 12 812 30 HOH HOH . 
L 6 HOH B 13 813 23 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               15.187 
_atom_site.Cartn_y               16.865 
_atom_site.Cartn_z               11.829 
_atom_site.occupancy             0.45 
_atom_site.B_iso_or_equiv        57.85 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           703 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              77 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#