data_8UJX # _model_server_result.job_id WyK4LhEFVDfzbe1ZGJKSHw _model_server_result.datetime_utc '2024-11-14 04:21:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ujx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 8UJX # _exptl.entry_id 8UJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8UJX _cell.length_a 98.929 _cell.length_b 98.929 _cell.length_c 81.568 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DT 3 T DT 3 1_555 B P XB9 4 T XB9 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale2 B O3' XB9 4 T XB9 4 1_555 B P DA 5 T DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? metalc ? metalc1 A OD1 ASP 16 A ASP 13 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 A OD2 ASP 16 A ASP 13 1_555 F MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc3 A O MET 17 A MET 14 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc4 A OD2 ASP 118 A ASP 115 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc5 A OD1 ASP 118 A ASP 115 1_555 F MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc6 A OE1 GLU 119 A GLU 116 1_555 F MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc7 D O1A XG4 . A XG4 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc8 D O2B XG4 . A XG4 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc9 D O2G XG4 . A XG4 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc10 D O1A XG4 . A XG4 501 1_555 F MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc11 F MG MG . A MG 503 1_555 G O HOH . A HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc12 F MG MG . A MG 503 1_555 C O3' DT 8 P DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? hydrog WATSON-CRICK hydrog1 B N1 DA 5 T DA 5 1_555 C N3 DT 8 P DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 DA 5 T DA 5 1_555 C O4 DT 8 P DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 DT 6 T DT 6 1_555 C N1 DA 7 P DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B O4 DT 6 T DT 6 1_555 C N6 DA 7 P DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N1 DG 7 T DG 7 1_555 C N3 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N2 DG 7 T DG 7 1_555 C O2 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O6 DG 7 T DG 7 1_555 C N4 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N1 DA 8 T DA 8 1_555 C N3 DT 5 P DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N6 DA 8 T DA 8 1_555 C O4 DT 5 P DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DC 9 T DC 9 1_555 C N1 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N4 DC 9 T DC 9 1_555 C O6 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O2 DC 9 T DC 9 1_555 C N2 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N1 DG 10 T DG 10 1_555 C N3 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N2 DG 10 T DG 10 1_555 C O2 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O6 DG 10 T DG 10 1_555 C N4 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 DC 11 T DC 11 1_555 C N1 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N4 DC 11 T DC 11 1_555 C O6 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O2 DC 11 T DC 11 1_555 C N2 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N3 DT 12 T DT 12 1_555 C N1 DA 1 P DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O4 DT 12 T DT 12 1_555 C N6 DA 1 P DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8UJX _atom_sites.fract_transf_matrix[1][1] 0.010108 _atom_sites.fract_transf_matrix[1][2] 0.005836 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 XG4 A 1 501 501 XG4 XG4 . E 5 MG A 1 502 1 MG MG . F 5 MG A 1 503 2 MG MG . G 6 HOH A 1 601 113 HOH HOH . G 6 HOH A 2 602 87 HOH HOH . G 6 HOH A 3 603 73 HOH HOH . G 6 HOH A 4 604 37 HOH HOH . G 6 HOH A 5 605 108 HOH HOH . G 6 HOH A 6 606 160 HOH HOH . G 6 HOH A 7 607 86 HOH HOH . G 6 HOH A 8 608 149 HOH HOH . G 6 HOH A 9 609 124 HOH HOH . G 6 HOH A 10 610 94 HOH HOH . G 6 HOH A 11 611 49 HOH HOH . G 6 HOH A 12 612 110 HOH HOH . G 6 HOH A 13 613 119 HOH HOH . G 6 HOH A 14 614 130 HOH HOH . G 6 HOH A 15 615 143 HOH HOH . G 6 HOH A 16 616 53 HOH HOH . G 6 HOH A 17 617 38 HOH HOH . G 6 HOH A 18 618 117 HOH HOH . G 6 HOH A 19 619 46 HOH HOH . G 6 HOH A 20 620 118 HOH HOH . G 6 HOH A 21 621 120 HOH HOH . G 6 HOH A 22 622 45 HOH HOH . G 6 HOH A 23 623 61 HOH HOH . G 6 HOH A 24 624 10 HOH HOH . G 6 HOH A 25 625 142 HOH HOH . G 6 HOH A 26 626 17 HOH HOH . G 6 HOH A 27 627 58 HOH HOH . G 6 HOH A 28 628 114 HOH HOH . G 6 HOH A 29 629 144 HOH HOH . G 6 HOH A 30 630 29 HOH HOH . G 6 HOH A 31 631 65 HOH HOH . G 6 HOH A 32 632 6 HOH HOH . G 6 HOH A 33 633 27 HOH HOH . G 6 HOH A 34 634 18 HOH HOH . G 6 HOH A 35 635 39 HOH HOH . G 6 HOH A 36 636 66 HOH HOH . G 6 HOH A 37 637 103 HOH HOH . G 6 HOH A 38 638 1 HOH HOH . G 6 HOH A 39 639 72 HOH HOH . G 6 HOH A 40 640 84 HOH HOH . G 6 HOH A 41 641 5 HOH HOH . G 6 HOH A 42 642 36 HOH HOH . G 6 HOH A 43 643 26 HOH HOH . G 6 HOH A 44 644 115 HOH HOH . G 6 HOH A 45 645 34 HOH HOH . G 6 HOH A 46 646 132 HOH HOH . G 6 HOH A 47 647 48 HOH HOH . G 6 HOH A 48 648 31 HOH HOH . G 6 HOH A 49 649 4 HOH HOH . G 6 HOH A 50 650 127 HOH HOH . G 6 HOH A 51 651 105 HOH HOH . G 6 HOH A 52 652 90 HOH HOH . G 6 HOH A 53 653 23 HOH HOH . G 6 HOH A 54 654 2 HOH HOH . G 6 HOH A 55 655 9 HOH HOH . G 6 HOH A 56 656 169 HOH HOH . G 6 HOH A 57 657 7 HOH HOH . G 6 HOH A 58 658 15 HOH HOH . G 6 HOH A 59 659 55 HOH HOH . G 6 HOH A 60 660 158 HOH HOH . G 6 HOH A 61 661 109 HOH HOH . G 6 HOH A 62 662 99 HOH HOH . G 6 HOH A 63 663 82 HOH HOH . G 6 HOH A 64 664 35 HOH HOH . G 6 HOH A 65 665 21 HOH HOH . G 6 HOH A 66 666 146 HOH HOH . G 6 HOH A 67 667 19 HOH HOH . G 6 HOH A 68 668 131 HOH HOH . G 6 HOH A 69 669 101 HOH HOH . G 6 HOH A 70 670 11 HOH HOH . G 6 HOH A 71 671 95 HOH HOH . G 6 HOH A 72 672 141 HOH HOH . G 6 HOH A 73 673 12 HOH HOH . G 6 HOH A 74 674 16 HOH HOH . G 6 HOH A 75 675 24 HOH HOH . G 6 HOH A 76 676 126 HOH HOH . G 6 HOH A 77 677 59 HOH HOH . G 6 HOH A 78 678 25 HOH HOH . G 6 HOH A 79 679 89 HOH HOH . G 6 HOH A 80 680 57 HOH HOH . G 6 HOH A 81 681 50 HOH HOH . G 6 HOH A 82 682 40 HOH HOH . G 6 HOH A 83 683 128 HOH HOH . G 6 HOH A 84 684 83 HOH HOH . G 6 HOH A 85 685 106 HOH HOH . G 6 HOH A 86 686 62 HOH HOH . G 6 HOH A 87 687 13 HOH HOH . G 6 HOH A 88 688 133 HOH HOH . G 6 HOH A 89 689 56 HOH HOH . G 6 HOH A 90 690 67 HOH HOH . G 6 HOH A 91 691 28 HOH HOH . G 6 HOH A 92 692 63 HOH HOH . G 6 HOH A 93 693 107 HOH HOH . G 6 HOH A 94 694 76 HOH HOH . G 6 HOH A 95 695 134 HOH HOH . G 6 HOH A 96 696 42 HOH HOH . G 6 HOH A 97 697 111 HOH HOH . G 6 HOH A 98 698 70 HOH HOH . G 6 HOH A 99 699 140 HOH HOH . G 6 HOH A 100 700 75 HOH HOH . G 6 HOH A 101 701 8 HOH HOH . G 6 HOH A 102 702 97 HOH HOH . G 6 HOH A 103 703 43 HOH HOH . G 6 HOH A 104 704 30 HOH HOH . G 6 HOH A 105 705 163 HOH HOH . G 6 HOH A 106 706 68 HOH HOH . G 6 HOH A 107 707 22 HOH HOH . G 6 HOH A 108 708 33 HOH HOH . G 6 HOH A 109 709 122 HOH HOH . G 6 HOH A 110 710 85 HOH HOH . G 6 HOH A 111 711 135 HOH HOH . G 6 HOH A 112 712 74 HOH HOH . G 6 HOH A 113 713 80 HOH HOH . G 6 HOH A 114 714 14 HOH HOH . G 6 HOH A 115 715 159 HOH HOH . G 6 HOH A 116 716 79 HOH HOH . G 6 HOH A 117 717 52 HOH HOH . G 6 HOH A 118 718 137 HOH HOH . G 6 HOH A 119 719 121 HOH HOH . G 6 HOH A 120 720 104 HOH HOH . G 6 HOH A 121 721 54 HOH HOH . G 6 HOH A 122 722 20 HOH HOH . G 6 HOH A 123 723 77 HOH HOH . G 6 HOH A 124 724 92 HOH HOH . G 6 HOH A 125 725 98 HOH HOH . G 6 HOH A 126 726 78 HOH HOH . G 6 HOH A 127 727 32 HOH HOH . G 6 HOH A 128 728 154 HOH HOH . G 6 HOH A 129 729 100 HOH HOH . G 6 HOH A 130 730 102 HOH HOH . G 6 HOH A 131 731 151 HOH HOH . G 6 HOH A 132 732 88 HOH HOH . G 6 HOH A 133 733 71 HOH HOH . G 6 HOH A 134 734 150 HOH HOH . G 6 HOH A 135 735 136 HOH HOH . G 6 HOH A 136 736 148 HOH HOH . G 6 HOH A 137 737 91 HOH HOH . G 6 HOH A 138 738 152 HOH HOH . G 6 HOH A 139 739 156 HOH HOH . G 6 HOH A 140 740 112 HOH HOH . G 6 HOH A 141 741 162 HOH HOH . G 6 HOH A 142 742 138 HOH HOH . G 6 HOH A 143 743 168 HOH HOH . G 6 HOH A 144 744 166 HOH HOH . G 6 HOH A 145 745 167 HOH HOH . G 6 HOH A 146 746 147 HOH HOH . G 6 HOH A 147 747 96 HOH HOH . G 6 HOH A 148 748 60 HOH HOH . G 6 HOH A 149 749 125 HOH HOH . G 6 HOH A 150 750 81 HOH HOH . G 6 HOH A 151 751 155 HOH HOH . H 6 HOH T 1 101 164 HOH HOH . H 6 HOH T 2 102 3 HOH HOH . H 6 HOH T 3 103 129 HOH HOH . H 6 HOH T 4 104 41 HOH HOH . H 6 HOH T 5 105 93 HOH HOH . H 6 HOH T 6 106 139 HOH HOH . H 6 HOH T 7 107 69 HOH HOH . I 6 HOH P 1 101 47 HOH HOH . I 6 HOH P 2 102 123 HOH HOH . I 6 HOH P 3 103 116 HOH HOH . I 6 HOH P 4 104 161 HOH HOH . I 6 HOH P 5 105 44 HOH HOH . I 6 HOH P 6 106 64 HOH HOH . I 6 HOH P 7 107 51 HOH HOH . I 6 HOH P 8 108 145 HOH HOH . I 6 HOH P 9 109 157 HOH HOH . I 6 HOH P 10 110 165 HOH HOH . I 6 HOH P 11 111 153 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x -43.897 _atom_site.Cartn_y -2.871 _atom_site.Cartn_z -11.909 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #