data_8UKN # _model_server_result.job_id urN4HFV1D-nMpClU8znQgA _model_server_result.datetime_utc '2025-07-15 04:34:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ukn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 8UKN # _exptl.entry_id 8UKN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.78 _cell.angle_gamma 90 _cell.entry_id 8UKN _cell.length_a 61.818 _cell.length_b 139.828 _cell.length_c 107.414 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UKN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,G 1 1 B,F,H 2 1 C,I 3 1 D,J 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 127 C PHE 138 1_555 A N SEP 128 C SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C SEP 128 C SEP 139 1_555 A N GLU 129 C GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C TRP 185 C TRP 196 1_555 A N TPO 186 C TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C TPO 186 C TPO 197 1_555 A N LEU 187 C LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C VAL 326 C VAL 337 1_555 A N SEP 327 C SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C SEP 327 C SEP 338 1_555 A N ILE 328 C ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C PHE 127 D PHE 138 1_555 B N SEP 128 D SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 B C SEP 128 D SEP 139 1_555 B N GLU 129 D GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 B C TRP 185 D TRP 196 1_555 B N TPO 186 D TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 B C TPO 186 D TPO 197 1_555 B N LEU 187 D LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 B C VAL 326 D VAL 337 1_555 B N SEP 327 D SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C SEP 327 D SEP 338 1_555 B N ILE 328 D ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 C C PHE 127 F PHE 138 1_555 C N SEP 128 F SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 C C SEP 128 F SEP 139 1_555 C N GLU 129 F GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 C C TRP 185 F TRP 196 1_555 C N TPO 186 F TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 C C TPO 186 F TPO 197 1_555 C N LEU 187 F LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale17 C C VAL 326 F VAL 337 1_555 C N SEP 327 F SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 C C SEP 327 F SEP 338 1_555 C N ILE 328 F ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 D C PHE 127 H PHE 138 1_555 D N SEP 128 H SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale20 D C SEP 128 H SEP 139 1_555 D N GLU 129 H GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 D C TRP 185 H TRP 196 1_555 D N TPO 186 H TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale22 D C TPO 186 H TPO 197 1_555 D N LEU 187 H LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale23 D C VAL 326 H VAL 337 1_555 D N SEP 327 H SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale24 D C SEP 327 H SEP 338 1_555 D N ILE 328 H ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 133 n n C1 C2 EDO sing 134 n n C1 H11 EDO sing 135 n n C1 H12 EDO sing 136 n n O1 HO1 EDO sing 137 n n C2 O2 EDO sing 138 n n C2 H21 EDO sing 139 n n C2 H22 EDO sing 140 n n O2 HO2 EDO sing 141 n n # _atom_sites.entry_id 8UKN _atom_sites.fract_transf_matrix[1][1] 0.016177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003669 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO C 1 401 401 EDO EDO . F 3 ANP D 1 400 400 ANP ANP . G 4 HOH C 1 501 44 HOH HOH . G 4 HOH C 2 502 2 HOH HOH . G 4 HOH C 3 503 33 HOH HOH . G 4 HOH C 4 504 24 HOH HOH . G 4 HOH C 5 505 20 HOH HOH . G 4 HOH C 6 506 125 HOH HOH . G 4 HOH C 7 507 70 HOH HOH . G 4 HOH C 8 508 139 HOH HOH . G 4 HOH C 9 509 34 HOH HOH . G 4 HOH C 10 510 68 HOH HOH . G 4 HOH C 11 511 127 HOH HOH . G 4 HOH C 12 512 80 HOH HOH . G 4 HOH C 13 513 65 HOH HOH . G 4 HOH C 14 514 82 HOH HOH . G 4 HOH C 15 515 97 HOH HOH . G 4 HOH C 16 516 84 HOH HOH . G 4 HOH C 17 517 46 HOH HOH . G 4 HOH C 18 518 43 HOH HOH . G 4 HOH C 19 519 9 HOH HOH . G 4 HOH C 20 520 63 HOH HOH . G 4 HOH C 21 521 10 HOH HOH . G 4 HOH C 22 522 48 HOH HOH . G 4 HOH C 23 523 13 HOH HOH . G 4 HOH C 24 524 83 HOH HOH . G 4 HOH C 25 525 17 HOH HOH . G 4 HOH C 26 526 58 HOH HOH . G 4 HOH C 27 527 15 HOH HOH . G 4 HOH C 28 528 94 HOH HOH . G 4 HOH C 29 529 1 HOH HOH . G 4 HOH C 30 530 126 HOH HOH . G 4 HOH C 31 531 90 HOH HOH . G 4 HOH C 32 532 135 HOH HOH . G 4 HOH C 33 533 49 HOH HOH . G 4 HOH C 34 534 133 HOH HOH . G 4 HOH C 35 535 100 HOH HOH . G 4 HOH C 36 536 134 HOH HOH . G 4 HOH C 37 537 136 HOH HOH . G 4 HOH C 38 538 99 HOH HOH . G 4 HOH C 39 539 98 HOH HOH . G 4 HOH C 40 540 140 HOH HOH . H 4 HOH D 1 501 101 HOH HOH . H 4 HOH D 2 502 28 HOH HOH . H 4 HOH D 3 503 39 HOH HOH . H 4 HOH D 4 504 45 HOH HOH . H 4 HOH D 5 505 75 HOH HOH . H 4 HOH D 6 506 31 HOH HOH . H 4 HOH D 7 507 130 HOH HOH . H 4 HOH D 8 508 26 HOH HOH . H 4 HOH D 9 509 122 HOH HOH . H 4 HOH D 10 510 21 HOH HOH . H 4 HOH D 11 511 59 HOH HOH . H 4 HOH D 12 512 6 HOH HOH . H 4 HOH D 13 513 54 HOH HOH . H 4 HOH D 14 514 74 HOH HOH . H 4 HOH D 15 515 7 HOH HOH . H 4 HOH D 16 516 50 HOH HOH . H 4 HOH D 17 517 61 HOH HOH . H 4 HOH D 18 518 14 HOH HOH . H 4 HOH D 19 519 56 HOH HOH . H 4 HOH D 20 520 40 HOH HOH . H 4 HOH D 21 521 81 HOH HOH . H 4 HOH D 22 522 119 HOH HOH . H 4 HOH D 23 523 71 HOH HOH . H 4 HOH D 24 524 86 HOH HOH . H 4 HOH D 25 525 88 HOH HOH . H 4 HOH D 26 526 5 HOH HOH . H 4 HOH D 27 527 3 HOH HOH . H 4 HOH D 28 528 124 HOH HOH . H 4 HOH D 29 529 53 HOH HOH . H 4 HOH D 30 530 51 HOH HOH . H 4 HOH D 31 531 42 HOH HOH . H 4 HOH D 32 532 92 HOH HOH . H 4 HOH D 33 533 11 HOH HOH . H 4 HOH D 34 534 8 HOH HOH . H 4 HOH D 35 535 123 HOH HOH . H 4 HOH D 36 536 115 HOH HOH . H 4 HOH D 37 537 72 HOH HOH . H 4 HOH D 38 538 18 HOH HOH . H 4 HOH D 39 539 116 HOH HOH . H 4 HOH D 40 540 128 HOH HOH . H 4 HOH D 41 541 117 HOH HOH . H 4 HOH D 42 542 129 HOH HOH . H 4 HOH D 43 543 120 HOH HOH . H 4 HOH D 44 544 131 HOH HOH . H 4 HOH D 45 545 114 HOH HOH . H 4 HOH D 46 546 12 HOH HOH . H 4 HOH D 47 547 118 HOH HOH . H 4 HOH D 48 548 132 HOH HOH . H 4 HOH D 49 549 121 HOH HOH . I 4 HOH F 1 401 60 HOH HOH . I 4 HOH F 2 402 104 HOH HOH . I 4 HOH F 3 403 143 HOH HOH . I 4 HOH F 4 404 76 HOH HOH . I 4 HOH F 5 405 38 HOH HOH . I 4 HOH F 6 406 109 HOH HOH . I 4 HOH F 7 407 37 HOH HOH . I 4 HOH F 8 408 64 HOH HOH . I 4 HOH F 9 409 27 HOH HOH . I 4 HOH F 10 410 47 HOH HOH . I 4 HOH F 11 411 36 HOH HOH . I 4 HOH F 12 412 41 HOH HOH . I 4 HOH F 13 413 73 HOH HOH . I 4 HOH F 14 414 35 HOH HOH . I 4 HOH F 15 415 79 HOH HOH . I 4 HOH F 16 416 25 HOH HOH . I 4 HOH F 17 417 137 HOH HOH . I 4 HOH F 18 418 22 HOH HOH . I 4 HOH F 19 419 16 HOH HOH . I 4 HOH F 20 420 4 HOH HOH . I 4 HOH F 21 421 69 HOH HOH . I 4 HOH F 22 422 96 HOH HOH . I 4 HOH F 23 423 102 HOH HOH . I 4 HOH F 24 424 30 HOH HOH . I 4 HOH F 25 425 138 HOH HOH . I 4 HOH F 26 426 91 HOH HOH . J 4 HOH H 1 401 29 HOH HOH . J 4 HOH H 2 402 110 HOH HOH . J 4 HOH H 3 403 113 HOH HOH . J 4 HOH H 4 404 93 HOH HOH . J 4 HOH H 5 405 19 HOH HOH . J 4 HOH H 6 406 67 HOH HOH . J 4 HOH H 7 407 55 HOH HOH . J 4 HOH H 8 408 141 HOH HOH . J 4 HOH H 9 409 23 HOH HOH . J 4 HOH H 10 410 57 HOH HOH . J 4 HOH H 11 411 62 HOH HOH . J 4 HOH H 12 412 111 HOH HOH . J 4 HOH H 13 413 95 HOH HOH . J 4 HOH H 14 414 52 HOH HOH . J 4 HOH H 15 415 106 HOH HOH . J 4 HOH H 16 416 103 HOH HOH . J 4 HOH H 17 417 105 HOH HOH . J 4 HOH H 18 418 112 HOH HOH . J 4 HOH H 19 419 66 HOH HOH . J 4 HOH H 20 420 108 HOH HOH . J 4 HOH H 21 421 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 35.554 5.324 79.784 1 59.99 ? C1 EDO 401 C 1 HETATM 2 O O1 EDO . . . E 2 34.191 5.767 79.829 1 54.78 ? O1 EDO 401 C 1 HETATM 3 C C2 EDO . . . E 2 35.829 4.39 80.959 1 58.59 ? C2 EDO 401 C 1 HETATM 4 O O2 EDO . . . E 2 36.849 3.443 80.616 1 42.15 ? O2 EDO 401 C 1 # _model_server_stats.io_time_ms 114 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #