data_8UKO # _model_server_result.job_id fCi5F_3H_maDNgB4mCdiXw _model_server_result.datetime_utc '2025-03-13 17:23:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 8UKO # _exptl.entry_id 8UKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UKO _cell.length_a 118.036 _cell.length_b 118.036 _cell.length_c 58.008 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 185 E TRP 196 1_555 A N TPO 186 E TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C TPO 186 E TPO 197 1_555 A N LEU 187 E LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C VAL 326 E VAL 337 1_555 A N SEP 327 E SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C SEP 327 E SEP 338 1_555 A N ILE 328 E ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD1 ASN 160 E ASN 171 1_555 C MG MG . E MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc2 A OD1 ASP 173 E ASP 184 1_555 D MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc3 A OD2 ASP 173 E ASP 184 1_555 D MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc4 C MG MG . E MG 401 1_555 E O3G ANP . E ANP 403 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.079 ? metalc ? metalc5 C MG MG . E MG 401 1_555 E O1B ANP . E ANP 403 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.687 ? metalc ? metalc6 C MG MG . E MG 401 1_555 E O2A ANP . E ANP 403 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.466 ? metalc ? metalc7 C MG MG . E MG 401 1_555 F O HOH . E HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc8 D MG MG . E MG 402 1_555 E O1B ANP . E ANP 403 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.259 ? metalc ? metalc9 D MG MG . E MG 402 1_555 F O HOH . E HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8UKO _atom_sites.fract_transf_matrix[1][1] 0.008472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017239 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG E 1 401 403 MG MG . D 3 MG E 1 402 405 MG MG . E 4 ANP E 1 403 600 ANP ANP . F 5 HOH E 1 501 1 HOH HOH . F 5 HOH E 2 502 3 HOH HOH . F 5 HOH E 3 503 5 HOH HOH . F 5 HOH E 4 504 8 HOH HOH . F 5 HOH E 5 505 4 HOH HOH . F 5 HOH E 6 506 6 HOH HOH . F 5 HOH E 7 507 7 HOH HOH . F 5 HOH E 8 508 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . B . E 4 32.686 -7.435 20.879 0.97 51.99 ? PG ANP 403 E 1 HETATM 2 O O1G ANP . B . E 4 33.364 -7.935 19.642 0.97 42.83 ? O1G ANP 403 E 1 HETATM 3 O O2G ANP . B . E 4 32.237 -8.663 21.761 0.97 42.13 ? O2G ANP 403 E 1 HETATM 4 O O3G ANP . B . E 4 31.418 -6.577 20.482 0.97 46.09 ? O3G ANP 403 E 1 HETATM 5 P PB ANP . B . E 4 33.132 -4.937 21.95 0.97 31.46 ? PB ANP 403 E 1 HETATM 6 O O1B ANP . B . E 4 32.378 -4.558 20.717 0.97 57.73 ? O1B ANP 403 E 1 HETATM 7 O O2B ANP . B . E 4 34.29 -3.925 22.186 0.97 44.03 ? O2B ANP 403 E 1 HETATM 8 N N3B ANP . B . E 4 33.761 -6.479 21.77 0.97 44.3 ? N3B ANP 403 E 1 HETATM 9 P PA ANP . B . E 4 30.746 -4.23 23.085 0.97 50.74 ? PA ANP 403 E 1 HETATM 10 O O1A ANP . B . E 4 30.843 -2.785 23.398 0.97 40.69 ? O1A ANP 403 E 1 HETATM 11 O O2A ANP . B . E 4 30.183 -4.538 21.694 0.97 49.94 ? O2A ANP 403 E 1 HETATM 12 O O3A ANP . B . E 4 32.17 -4.93 23.177 0.97 35.87 ? O3A ANP 403 E 1 HETATM 13 O O5' ANP . B . E 4 29.878 -4.916 24.22 0.97 40 ? O5' ANP 403 E 1 HETATM 14 C C5' ANP . B . E 4 30.361 -6.058 24.958 0.97 31.22 ? C5' ANP 403 E 1 HETATM 15 C C4' ANP . B . E 4 29.23 -6.612 25.788 0.97 37.06 ? C4' ANP 403 E 1 HETATM 16 O O4' ANP . B . E 4 29.052 -5.802 26.967 0.97 41.91 ? O4' ANP 403 E 1 HETATM 17 C C3' ANP . B . E 4 27.865 -6.614 25.113 0.97 43.47 ? C3' ANP 403 E 1 HETATM 18 O O3' ANP . B . E 4 27.696 -7.773 24.305 0.97 40.05 ? O3' ANP 403 E 1 HETATM 19 C C2' ANP . B . E 4 26.909 -6.611 26.308 0.97 44.92 ? C2' ANP 403 E 1 HETATM 20 O O2' ANP . B . E 4 26.663 -7.926 26.791 0.97 47.92 ? O2' ANP 403 E 1 HETATM 21 C C1' ANP . B . E 4 27.687 -5.795 27.349 0.97 44.78 ? C1' ANP 403 E 1 HETATM 22 N N9 ANP . B . E 4 27.247 -4.408 27.463 0.97 34.06 ? N9 ANP 403 E 1 HETATM 23 C C8 ANP . B . E 4 27.831 -3.306 26.895 0.97 35.22 ? C8 ANP 403 E 1 HETATM 24 N N7 ANP . B . E 4 27.216 -2.179 27.164 0.97 38.18 ? N7 ANP 403 E 1 HETATM 25 C C5 ANP . B . E 4 26.152 -2.567 27.962 0.97 38.25 ? C5 ANP 403 E 1 HETATM 26 C C6 ANP . B . E 4 25.115 -1.841 28.581 0.97 41.32 ? C6 ANP 403 E 1 HETATM 27 N N6 ANP . B . E 4 24.979 -0.516 28.487 0.97 50.13 ? N6 ANP 403 E 1 HETATM 28 N N1 ANP . B . E 4 24.212 -2.534 29.311 0.97 42.67 ? N1 ANP 403 E 1 HETATM 29 C C2 ANP . B . E 4 24.345 -3.86 29.408 0.97 45.42 ? C2 ANP 403 E 1 HETATM 30 N N3 ANP . B . E 4 25.278 -4.651 28.87 0.97 41.92 ? N3 ANP 403 E 1 HETATM 31 C C4 ANP . B . E 4 26.156 -3.939 28.155 0.97 39.61 ? C4 ANP 403 E 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 31 #