data_8UKP # _model_server_result.job_id 0tpBaviaInaeF3OD0J746Q _model_server_result.datetime_utc '2025-07-14 08:13:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ukp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8UKP # _exptl.entry_id 8UKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UKP _cell.length_a 118.63 _cell.length_b 118.63 _cell.length_c 57.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C PHE 127 E PHE 138 1_555 B N SEP 128 E SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C SEP 128 E SEP 139 1_555 B N GLU 129 E GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C TRP 185 E TRP 196 1_555 B N TPO 186 E TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C TPO 186 E TPO 197 1_555 B N LEU 187 E LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 C MG MG . C MG 2001 1_555 F O HOH . C HOH 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc2 C MG MG . C MG 2001 1_555 E O1B ANP . E ANP 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.41 ? metalc ? metalc3 C MG MG . C MG 2001 1_555 E O1G ANP . E ANP 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 C MG MG . C MG 2001 1_555 G O HOH . E HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc5 C MG MG . C MG 2001 1_555 G O HOH . E HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc6 B OD1 ASN 160 E ASN 171 1_555 D MG MG . E MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 D MG MG . E MG 401 1_555 E O2A ANP . E ANP 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.707 ? metalc ? metalc8 D MG MG . E MG 401 1_555 E O3G ANP . E ANP 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.546 ? metalc ? metalc9 D MG MG . E MG 401 1_555 G O HOH . E HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8UKP _atom_sites.fract_transf_matrix[1][1] 0.00843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01751 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG C 1 2001 404 MG MG . D 3 MG E 1 401 403 MG MG . E 4 ANP E 1 402 600 ANP ANP . F 5 HOH C 1 2101 6 HOH HOH . G 5 HOH E 1 501 2 HOH HOH . G 5 HOH E 2 502 5 HOH HOH . G 5 HOH E 3 503 12 HOH HOH . G 5 HOH E 4 504 4 HOH HOH . G 5 HOH E 5 505 10 HOH HOH . G 5 HOH E 6 506 7 HOH HOH . G 5 HOH E 7 507 8 HOH HOH . G 5 HOH E 8 508 3 HOH HOH . G 5 HOH E 9 509 1 HOH HOH . G 5 HOH E 10 510 9 HOH HOH . G 5 HOH E 11 511 11 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -3.267 _atom_site.Cartn_y 35.953 _atom_site.Cartn_z -5.491 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #