data_8UKP # _model_server_result.job_id B00fKd0VAZ8POyfGyCPQYQ _model_server_result.datetime_utc '2025-07-15 08:49:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ukp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 8UKP # _exptl.entry_id 8UKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UKP _cell.length_a 118.63 _cell.length_b 118.63 _cell.length_c 57.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C PHE 127 E PHE 138 1_555 B N SEP 128 E SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C SEP 128 E SEP 139 1_555 B N GLU 129 E GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C TRP 185 E TRP 196 1_555 B N TPO 186 E TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C TPO 186 E TPO 197 1_555 B N LEU 187 E LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 C MG MG . C MG 2001 1_555 F O HOH . C HOH 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc2 C MG MG . C MG 2001 1_555 E O1B ANP . E ANP 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.41 ? metalc ? metalc3 C MG MG . C MG 2001 1_555 E O1G ANP . E ANP 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 C MG MG . C MG 2001 1_555 G O HOH . E HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc5 C MG MG . C MG 2001 1_555 G O HOH . E HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc6 B OD1 ASN 160 E ASN 171 1_555 D MG MG . E MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 D MG MG . E MG 401 1_555 E O2A ANP . E ANP 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.707 ? metalc ? metalc8 D MG MG . E MG 401 1_555 E O3G ANP . E ANP 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.546 ? metalc ? metalc9 D MG MG . E MG 401 1_555 G O HOH . E HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8UKP _atom_sites.fract_transf_matrix[1][1] 0.00843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01751 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG C 1 2001 404 MG MG . D 3 MG E 1 401 403 MG MG . E 4 ANP E 1 402 600 ANP ANP . F 5 HOH C 1 2101 6 HOH HOH . G 5 HOH E 1 501 2 HOH HOH . G 5 HOH E 2 502 5 HOH HOH . G 5 HOH E 3 503 12 HOH HOH . G 5 HOH E 4 504 4 HOH HOH . G 5 HOH E 5 505 10 HOH HOH . G 5 HOH E 6 506 7 HOH HOH . G 5 HOH E 7 507 8 HOH HOH . G 5 HOH E 8 508 3 HOH HOH . G 5 HOH E 9 509 1 HOH HOH . G 5 HOH E 10 510 9 HOH HOH . G 5 HOH E 11 511 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . B . E 4 -6.085 37.596 -3.258 1 99.04 ? PG ANP 402 E 1 HETATM 2 O O1G ANP . B . E 4 -6.842 37.9 -4.512 1 71.89 ? O1G ANP 402 E 1 HETATM 3 O O2G ANP . B . E 4 -5.801 38.937 -2.479 1 68.6 ? O2G ANP 402 E 1 HETATM 4 O O3G ANP . B . E 4 -4.708 36.907 -3.622 1 88.25 ? O3G ANP 402 E 1 HETATM 5 P PB ANP . B . E 4 -7.221 35.065 -2.981 1 107.28 ? PB ANP 402 E 1 HETATM 6 O O1B ANP . B . E 4 -6.762 35.092 -4.403 1 84.04 ? O1B ANP 402 E 1 HETATM 7 O O2B ANP . B . E 4 -8.73 34.688 -2.926 1 104.26 ? O2B ANP 402 E 1 HETATM 8 N N3B ANP . B . E 4 -6.995 36.567 -2.267 1 85.01 ? N3B ANP 402 E 1 HETATM 9 P PA ANP . B . E 4 -4.81 34.046 -2.21 1 93.35 ? PA ANP 402 E 1 HETATM 10 O O1A ANP . B . E 4 -4.24 32.803 -1.64 1 75.36 ? O1A ANP 402 E 1 HETATM 11 O O2A ANP . B . E 4 -4.387 34.304 -3.66 1 77.84 ? O2A ANP 402 E 1 HETATM 12 O O3A ANP . B . E 4 -6.399 34.004 -2.189 1 75.22 ? O3A ANP 402 E 1 HETATM 13 O O5' ANP . B . E 4 -4.405 35.256 -1.264 1 84.37 ? O5' ANP 402 E 1 HETATM 14 C C5' ANP . B . E 4 -4.997 35.423 0.042 1 86.52 ? C5' ANP 402 E 1 HETATM 15 C C4' ANP . B . E 4 -3.963 35.956 1.005 1 75.15 ? C4' ANP 402 E 1 HETATM 16 O O4' ANP . B . E 4 -3.496 34.884 1.853 1 76.44 ? O4' ANP 402 E 1 HETATM 17 C C3' ANP . B . E 4 -2.719 36.57 0.367 1 59.66 ? C3' ANP 402 E 1 HETATM 18 O O3' ANP . B . E 4 -2.267 37.699 1.106 1 66.3 ? O3' ANP 402 E 1 HETATM 19 C C2' ANP . B . E 4 -1.71 35.42 0.404 1 58.14 ? C2' ANP 402 E 1 HETATM 20 O O2' ANP . B . E 4 -0.372 35.898 0.487 1 69.28 ? O2' ANP 402 E 1 HETATM 21 C C1' ANP . B . E 4 -2.103 34.699 1.693 1 48.65 ? C1' ANP 402 E 1 HETATM 22 N N9 ANP . B . E 4 -1.833 33.265 1.67 1 53.92 ? N9 ANP 402 E 1 HETATM 23 C C8 ANP . B . E 4 -2.502 32.312 0.946 1 65.76 ? C8 ANP 402 E 1 HETATM 24 N N7 ANP . B . E 4 -2.043 31.096 1.115 1 66.82 ? N7 ANP 402 E 1 HETATM 25 C C5 ANP . B . E 4 -0.997 31.258 2.013 1 59.22 ? C5 ANP 402 E 1 HETATM 26 C C6 ANP . B . E 4 -0.1 30.347 2.599 1 52.74 ? C6 ANP 402 E 1 HETATM 27 N N6 ANP . B . E 4 -0.112 29.033 2.358 1 54.28 ? N6 ANP 402 E 1 HETATM 28 N N1 ANP . B . E 4 0.824 30.839 3.454 1 61.78 ? N1 ANP 402 E 1 HETATM 29 C C2 ANP . B . E 4 0.841 32.152 3.698 1 59.94 ? C2 ANP 402 E 1 HETATM 30 N N3 ANP . B . E 4 0.047 33.106 3.205 1 60.32 ? N3 ANP 402 E 1 HETATM 31 C C4 ANP . B . E 4 -0.859 32.592 2.362 1 56.02 ? C4 ANP 402 E 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #