data_8UL9
#
_model_server_result.job_id            db9P9Q-uLC0RFmEwH19Ldg 
_model_server_result.datetime_utc      '2025-04-26 18:44:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ul9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1003}' 
#
_entry.id    8UL9 
#
_exptl.entry_id    8UL9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              787.121 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 1 1_555 A N GLY 2 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 B C ACE 1 B ACE 1 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 A OD1 ASP 96 A ASP 96 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc2 A OD2 ASP 96 A ASP 96 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc3 A OD1 ASP 121 A ASP 121 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc4 B OD1 ASP 96 B ASP 96 1_555 I MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc5 B OD1 ASP 96 B ASP 96 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc6 B OD2 ASP 96 B ASP 96 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? 
metalc ? metalc7 B OD2 ASP 99 B ASP 99 1_555 I MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc8 B OD2 ASP 117 B ASP 117 1_555 I MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc9 B OD1 ASP 117 B ASP 117 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc10 B OD1 ASP 121 B ASP 121 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc11 B OD2 ASP 121 B ASP 121 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
#
_chem_comp.formula           'C44 H85 N O8 P 1' 
_chem_comp.formula_weight    787.121 
_chem_comp.id                PCW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PCW sing 362 n n 
C1 O3P PCW sing 363 n n 
C1 H11 PCW sing 364 n n 
C1 H12 PCW sing 365 n n 
C2 C3 PCW sing 366 n n 
C2 O2 PCW sing 367 n n 
C2 H2 PCW sing 368 n n 
C3 O3 PCW sing 369 n n 
C3 H31 PCW sing 370 n n 
C3 H32 PCW sing 371 n n 
C4 C5 PCW sing 372 n n 
C4 O4P PCW sing 373 n n 
C4 H41 PCW sing 374 n n 
C4 H42 PCW sing 375 n n 
C5 N PCW sing 376 n n 
C5 H51 PCW sing 377 n n 
C5 H52 PCW sing 378 n n 
C6 N PCW sing 379 n n 
C6 H61 PCW sing 380 n n 
C6 H62 PCW sing 381 n n 
C6 H63 PCW sing 382 n n 
C7 N PCW sing 383 n n 
C7 H71 PCW sing 384 n n 
C7 H72 PCW sing 385 n n 
C7 H73 PCW sing 386 n n 
C8 N PCW sing 387 n n 
C8 H81 PCW sing 388 n n 
C8 H82 PCW sing 389 n n 
C8 H83 PCW sing 390 n n 
C11 C12 PCW sing 391 n n 
C11 O3 PCW sing 392 n n 
C11 O11 PCW doub 393 n n 
C12 C13 PCW sing 394 n n 
C12 H121 PCW sing 395 n n 
C12 H122 PCW sing 396 n n 
C13 C14 PCW sing 397 n n 
C13 H131 PCW sing 398 n n 
C13 H132 PCW sing 399 n n 
C14 C15 PCW sing 400 n n 
C14 H141 PCW sing 401 n n 
C14 H142 PCW sing 402 n n 
C15 C16 PCW sing 403 n n 
C15 H151 PCW sing 404 n n 
C15 H152 PCW sing 405 n n 
C16 C17 PCW sing 406 n n 
C16 H161 PCW sing 407 n n 
C16 H162 PCW sing 408 n n 
C17 C18 PCW sing 409 n n 
C17 H171 PCW sing 410 n n 
C17 H172 PCW sing 411 n n 
C18 C19 PCW sing 412 n n 
C18 H181 PCW sing 413 n n 
C18 H182 PCW sing 414 n n 
C19 C20 PCW doub 415 z n 
C19 H19 PCW sing 416 n n 
C20 C21 PCW sing 417 n n 
C20 H20 PCW sing 418 n n 
C21 C22 PCW sing 419 n n 
C21 H211 PCW sing 420 n n 
C21 H212 PCW sing 421 n n 
C22 C23 PCW sing 422 n n 
C22 H221 PCW sing 423 n n 
C22 H222 PCW sing 424 n n 
C23 C24 PCW sing 425 n n 
C23 H231 PCW sing 426 n n 
C23 H232 PCW sing 427 n n 
C24 C25 PCW sing 428 n n 
C24 H241 PCW sing 429 n n 
C24 H242 PCW sing 430 n n 
C25 C26 PCW sing 431 n n 
C25 H251 PCW sing 432 n n 
C25 H252 PCW sing 433 n n 
C26 C27 PCW sing 434 n n 
C26 H261 PCW sing 435 n n 
C26 H262 PCW sing 436 n n 
C27 C28 PCW sing 437 n n 
C27 H271 PCW sing 438 n n 
C27 H272 PCW sing 439 n n 
C28 H281 PCW sing 440 n n 
C28 H282 PCW sing 441 n n 
C28 H283 PCW sing 442 n n 
C31 C32 PCW sing 443 n n 
C31 O2 PCW sing 444 n n 
C31 O31 PCW doub 445 n n 
C32 C33 PCW sing 446 n n 
C32 H321 PCW sing 447 n n 
C32 H322 PCW sing 448 n n 
C33 C34 PCW sing 449 n n 
C33 H331 PCW sing 450 n n 
C33 H332 PCW sing 451 n n 
C34 C35 PCW sing 452 n n 
C34 H341 PCW sing 453 n n 
C34 H342 PCW sing 454 n n 
C35 C36 PCW sing 455 n n 
C35 H351 PCW sing 456 n n 
C35 H352 PCW sing 457 n n 
C36 C37 PCW sing 458 n n 
C36 H361 PCW sing 459 n n 
C36 H362 PCW sing 460 n n 
C37 C38 PCW sing 461 n n 
C37 H371 PCW sing 462 n n 
C37 H372 PCW sing 463 n n 
C38 C39 PCW sing 464 n n 
C38 H381 PCW sing 465 n n 
C38 H382 PCW sing 466 n n 
C39 C40 PCW doub 467 z n 
C39 H39 PCW sing 468 n n 
C40 C41 PCW sing 469 n n 
C40 H40 PCW sing 470 n n 
C41 C42 PCW sing 471 n n 
C41 H411 PCW sing 472 n n 
C41 H412 PCW sing 473 n n 
C42 C43 PCW sing 474 n n 
C42 H421 PCW sing 475 n n 
C42 H422 PCW sing 476 n n 
C43 C44 PCW sing 477 n n 
C43 H431 PCW sing 478 n n 
C43 H432 PCW sing 479 n n 
C44 C45 PCW sing 480 n n 
C44 H441 PCW sing 481 n n 
C44 H442 PCW sing 482 n n 
C45 C46 PCW sing 483 n n 
C45 H451 PCW sing 484 n n 
C45 H452 PCW sing 485 n n 
C46 C47 PCW sing 486 n n 
C46 H461 PCW sing 487 n n 
C46 H462 PCW sing 488 n n 
C47 C48 PCW sing 489 n n 
C47 H471 PCW sing 490 n n 
C47 H472 PCW sing 491 n n 
C48 H481 PCW sing 492 n n 
C48 H482 PCW sing 493 n n 
C48 H483 PCW sing 494 n n 
O1P P PCW sing 495 n n 
O1P H1P PCW sing 496 n n 
O2P P PCW doub 497 n n 
O3P P PCW sing 498 n n 
O4P P PCW sing 499 n n 
#
_atom_sites.entry_id                     8UL9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 1001 1001 MG MG . 
D 2 MG A 1 1002 1002 MG MG . 
E 3 PCW A 1 1003 1003 PCW PCW . 
F 3 PCW A 1 1004 1004 PCW PCW . 
G 3 PCW A 1 1005 1005 PCW PCW . 
H 4 DGA A 1 1007 1007 DGA DGA . 
I 2 MG B 1 1001 1001 MG MG . 
J 2 MG B 1 1002 1002 MG MG . 
K 3 PCW B 1 1003 1003 PCW PCW . 
L 3 PCW B 1 1004 1004 PCW PCW . 
M 3 PCW B 1 1005 1005 PCW PCW . 
N 4 DGA B 1 1007 1007 DGA DGA . 
O 5 HOH A 1 1008 1008 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PCW . . . K 3 127.939 145.807 151.996 1 83.71 ? C1 PCW 1003 B 1 
HETATM 2 C C2 PCW . . . K 3 129.005 145.317 151.009 1 81.44 ? C2 PCW 1003 B 1 
HETATM 3 C C3 PCW . . . K 3 129.322 143.85 151.299 1 84.52 ? C3 PCW 1003 B 1 
HETATM 4 C C4 PCW . . . K 3 127.992 144.483 156.444 1 117.13 ? C4 PCW 1003 B 1 
HETATM 5 C C5 PCW . . . K 3 129.409 144.271 157.053 1 113.51 ? C5 PCW 1003 B 1 
HETATM 6 C C6 PCW . . . K 3 128.676 142.327 158.284 1 108.01 ? C6 PCW 1003 B 1 
HETATM 7 C C7 PCW . . . K 3 130.63 143.522 158.998 1 111.91 ? C7 PCW 1003 B 1 
HETATM 8 C C8 PCW . . . K 3 128.464 144.511 159.27 1 115.75 ? C8 PCW 1003 B 1 
HETATM 9 C C11 PCW . . . K 3 130.828 142.364 150.21 1 75.79 ? C11 PCW 1003 B 1 
HETATM 10 C C12 PCW . . . K 3 131.911 142.391 149.111 1 52.68 ? C12 PCW 1003 B 1 
HETATM 11 C C13 PCW . . . K 3 132.854 143.601 149.339 1 47.09 ? C13 PCW 1003 B 1 
HETATM 12 C C14 PCW . . . K 3 133.978 143.555 148.279 1 44.13 ? C14 PCW 1003 B 1 
HETATM 13 C C15 PCW . . . K 3 134.177 144.962 147.676 1 50.11 ? C15 PCW 1003 B 1 
HETATM 14 C C16 PCW . . . K 3 135.202 144.894 146.522 1 31.63 ? C16 PCW 1003 B 1 
HETATM 15 C C17 PCW . . . K 3 135 143.593 145.706 1 30.62 ? C17 PCW 1003 B 1 
HETATM 16 C C18 PCW . . . K 3 135.52 143.765 144.259 1 18.64 ? C18 PCW 1003 B 1 
HETATM 17 C C19 PCW . . . K 3 136.16 145.163 144.09 1 24.86 ? C19 PCW 1003 B 1 
HETATM 18 C C20 PCW . . . K 3 136.173 145.569 142.821 1 30.2 ? C20 PCW 1003 B 1 
HETATM 19 C C21 PCW . . . K 3 135.883 145.397 141.313 1 29.25 ? C21 PCW 1003 B 1 
HETATM 20 C C22 PCW . . . K 3 135.456 146.768 140.73 1 37.08 ? C22 PCW 1003 B 1 
HETATM 21 C C23 PCW . . . K 3 135.768 146.796 139.212 1 40.11 ? C23 PCW 1003 B 1 
HETATM 22 C C24 PCW . . . K 3 134.47 147.11 138.433 1 55.18 ? C24 PCW 1003 B 1 
HETATM 23 C C25 PCW . . . K 3 134.395 146.201 137.181 1 63.34 ? C25 PCW 1003 B 1 
HETATM 24 C C26 PCW . . . K 3 135.175 146.88 136.026 1 68.52 ? C26 PCW 1003 B 1 
HETATM 25 C C31 PCW . . . K 3 129.312 146.316 148.884 1 87.94 ? C31 PCW 1003 B 1 
HETATM 26 C C32 PCW . . . K 3 128.968 146.503 147.383 1 82.42 ? C32 PCW 1003 B 1 
HETATM 27 C C33 PCW . . . K 3 129.292 147.954 146.956 1 80.64 ? C33 PCW 1003 B 1 
HETATM 28 C C34 PCW . . . K 3 128.411 148.945 147.764 1 81.93 ? C34 PCW 1003 B 1 
HETATM 29 C C35 PCW . . . K 3 128.003 150.148 146.874 1 82.74 ? C35 PCW 1003 B 1 
HETATM 30 C C36 PCW . . . K 3 129.214 150.625 146.029 1 81.4 ? C36 PCW 1003 B 1 
HETATM 31 C C37 PCW . . . K 3 128.766 150.817 144.559 1 69.04 ? C37 PCW 1003 B 1 
HETATM 32 C C38 PCW . . . K 3 129.84 150.241 143.599 1 60.09 ? C38 PCW 1003 B 1 
HETATM 33 C C39 PCW . . . K 3 129.806 151.043 142.274 1 71.29 ? C39 PCW 1003 B 1 
HETATM 34 C C40 PCW . . . K 3 130.869 151.045 141.455 1 66.19 ? C40 PCW 1003 B 1 
HETATM 35 C C41 PCW . . . K 3 132.134 150.239 141.833 1 60.65 ? C41 PCW 1003 B 1 
HETATM 36 C C42 PCW . . . K 3 133.086 150.115 140.606 1 64.92 ? C42 PCW 1003 B 1 
HETATM 37 C C43 PCW . . . K 3 132.312 150.405 139.285 1 68.17 ? C43 PCW 1003 B 1 
HETATM 38 C C44 PCW . . . K 3 133.203 151.255 138.336 1 77.75 ? C44 PCW 1003 B 1 
HETATM 39 C C45 PCW . . . K 3 132.638 151.2 136.889 1 68.28 ? C45 PCW 1003 B 1 
HETATM 40 C C46 PCW . . . K 3 131.087 151.204 136.927 1 61.31 ? C46 PCW 1003 B 1 
HETATM 41 C C47 PCW . . . K 3 130.545 152.605 136.545 1 67.67 ? C47 PCW 1003 B 1 
HETATM 42 C C48 PCW . . . K 3 131.313 153.159 135.324 1 55.89 ? C48 PCW 1003 B 1 
HETATM 43 N N PCW . . . K 3 129.29 143.656 158.405 1 116.78 ? N PCW 1003 B 1 
HETATM 44 O O2 PCW . . . K 3 128.52 145.457 149.696 1 73.99 ? O2 PCW 1003 B 1 
HETATM 45 O O3 PCW . . . K 3 129.672 143.178 150.093 1 81.24 ? O3 PCW 1003 B 1 
HETATM 46 O O11 PCW . . . K 3 130.964 141.666 151.156 1 83.37 ? O11 PCW 1003 B 1 
HETATM 47 O O31 PCW . . . K 3 130.243 146.888 149.354 1 88.23 ? O31 PCW 1003 B 1 
HETATM 48 O O1P PCW . . . K 3 126.419 146.136 154.497 1 133.25 ? O1P PCW 1003 B 1 
HETATM 49 O O2P PCW . . . K 3 125.573 143.824 154.301 1 119.89 ? O2P PCW 1003 B 1 
HETATM 50 O O3P PCW . . . K 3 127.242 144.69 152.513 1 94.91 ? O3P PCW 1003 B 1 
HETATM 51 O O4P PCW . . . K 3 128.026 144.183 155.057 1 115.74 ? O4P PCW 1003 B 1 
HETATM 52 P P PCW . . . K 3 126.773 144.72 154.108 1 140.84 ? P PCW 1003 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           52 
#