data_8UL9 # _model_server_result.job_id Jl7cgzxXDn8jsw65b2flGQ _model_server_result.datetime_utc '2025-04-03 22:26:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ul9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1004}' # _entry.id 8UL9 # _exptl.entry_id 8UL9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.121 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 1 1_555 A N GLY 2 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B C ACE 1 B ACE 1 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD1 ASP 96 A ASP 96 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc2 A OD2 ASP 96 A ASP 96 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc3 A OD1 ASP 121 A ASP 121 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc4 B OD1 ASP 96 B ASP 96 1_555 I MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc5 B OD1 ASP 96 B ASP 96 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc6 B OD2 ASP 96 B ASP 96 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc7 B OD2 ASP 99 B ASP 99 1_555 I MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc8 B OD2 ASP 117 B ASP 117 1_555 I MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc9 B OD1 ASP 117 B ASP 117 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc10 B OD1 ASP 121 B ASP 121 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc11 B OD2 ASP 121 B ASP 121 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 362 n n C1 O3P PCW sing 363 n n C1 H11 PCW sing 364 n n C1 H12 PCW sing 365 n n C2 C3 PCW sing 366 n n C2 O2 PCW sing 367 n n C2 H2 PCW sing 368 n n C3 O3 PCW sing 369 n n C3 H31 PCW sing 370 n n C3 H32 PCW sing 371 n n C4 C5 PCW sing 372 n n C4 O4P PCW sing 373 n n C4 H41 PCW sing 374 n n C4 H42 PCW sing 375 n n C5 N PCW sing 376 n n C5 H51 PCW sing 377 n n C5 H52 PCW sing 378 n n C6 N PCW sing 379 n n C6 H61 PCW sing 380 n n C6 H62 PCW sing 381 n n C6 H63 PCW sing 382 n n C7 N PCW sing 383 n n C7 H71 PCW sing 384 n n C7 H72 PCW sing 385 n n C7 H73 PCW sing 386 n n C8 N PCW sing 387 n n C8 H81 PCW sing 388 n n C8 H82 PCW sing 389 n n C8 H83 PCW sing 390 n n C11 C12 PCW sing 391 n n C11 O3 PCW sing 392 n n C11 O11 PCW doub 393 n n C12 C13 PCW sing 394 n n C12 H121 PCW sing 395 n n C12 H122 PCW sing 396 n n C13 C14 PCW sing 397 n n C13 H131 PCW sing 398 n n C13 H132 PCW sing 399 n n C14 C15 PCW sing 400 n n C14 H141 PCW sing 401 n n C14 H142 PCW sing 402 n n C15 C16 PCW sing 403 n n C15 H151 PCW sing 404 n n C15 H152 PCW sing 405 n n C16 C17 PCW sing 406 n n C16 H161 PCW sing 407 n n C16 H162 PCW sing 408 n n C17 C18 PCW sing 409 n n C17 H171 PCW sing 410 n n C17 H172 PCW sing 411 n n C18 C19 PCW sing 412 n n C18 H181 PCW sing 413 n n C18 H182 PCW sing 414 n n C19 C20 PCW doub 415 z n C19 H19 PCW sing 416 n n C20 C21 PCW sing 417 n n C20 H20 PCW sing 418 n n C21 C22 PCW sing 419 n n C21 H211 PCW sing 420 n n C21 H212 PCW sing 421 n n C22 C23 PCW sing 422 n n C22 H221 PCW sing 423 n n C22 H222 PCW sing 424 n n C23 C24 PCW sing 425 n n C23 H231 PCW sing 426 n n C23 H232 PCW sing 427 n n C24 C25 PCW sing 428 n n C24 H241 PCW sing 429 n n C24 H242 PCW sing 430 n n C25 C26 PCW sing 431 n n C25 H251 PCW sing 432 n n C25 H252 PCW sing 433 n n C26 C27 PCW sing 434 n n C26 H261 PCW sing 435 n n C26 H262 PCW sing 436 n n C27 C28 PCW sing 437 n n C27 H271 PCW sing 438 n n C27 H272 PCW sing 439 n n C28 H281 PCW sing 440 n n C28 H282 PCW sing 441 n n C28 H283 PCW sing 442 n n C31 C32 PCW sing 443 n n C31 O2 PCW sing 444 n n C31 O31 PCW doub 445 n n C32 C33 PCW sing 446 n n C32 H321 PCW sing 447 n n C32 H322 PCW sing 448 n n C33 C34 PCW sing 449 n n C33 H331 PCW sing 450 n n C33 H332 PCW sing 451 n n C34 C35 PCW sing 452 n n C34 H341 PCW sing 453 n n C34 H342 PCW sing 454 n n C35 C36 PCW sing 455 n n C35 H351 PCW sing 456 n n C35 H352 PCW sing 457 n n C36 C37 PCW sing 458 n n C36 H361 PCW sing 459 n n C36 H362 PCW sing 460 n n C37 C38 PCW sing 461 n n C37 H371 PCW sing 462 n n C37 H372 PCW sing 463 n n C38 C39 PCW sing 464 n n C38 H381 PCW sing 465 n n C38 H382 PCW sing 466 n n C39 C40 PCW doub 467 z n C39 H39 PCW sing 468 n n C40 C41 PCW sing 469 n n C40 H40 PCW sing 470 n n C41 C42 PCW sing 471 n n C41 H411 PCW sing 472 n n C41 H412 PCW sing 473 n n C42 C43 PCW sing 474 n n C42 H421 PCW sing 475 n n C42 H422 PCW sing 476 n n C43 C44 PCW sing 477 n n C43 H431 PCW sing 478 n n C43 H432 PCW sing 479 n n C44 C45 PCW sing 480 n n C44 H441 PCW sing 481 n n C44 H442 PCW sing 482 n n C45 C46 PCW sing 483 n n C45 H451 PCW sing 484 n n C45 H452 PCW sing 485 n n C46 C47 PCW sing 486 n n C46 H461 PCW sing 487 n n C46 H462 PCW sing 488 n n C47 C48 PCW sing 489 n n C47 H471 PCW sing 490 n n C47 H472 PCW sing 491 n n C48 H481 PCW sing 492 n n C48 H482 PCW sing 493 n n C48 H483 PCW sing 494 n n O1P P PCW sing 495 n n O1P H1P PCW sing 496 n n O2P P PCW doub 497 n n O3P P PCW sing 498 n n O4P P PCW sing 499 n n # _atom_sites.entry_id 8UL9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1001 1001 MG MG . D 2 MG A 1 1002 1002 MG MG . E 3 PCW A 1 1003 1003 PCW PCW . F 3 PCW A 1 1004 1004 PCW PCW . G 3 PCW A 1 1005 1005 PCW PCW . H 4 DGA A 1 1007 1007 DGA DGA . I 2 MG B 1 1001 1001 MG MG . J 2 MG B 1 1002 1002 MG MG . K 3 PCW B 1 1003 1003 PCW PCW . L 3 PCW B 1 1004 1004 PCW PCW . M 3 PCW B 1 1005 1005 PCW PCW . N 4 DGA B 1 1007 1007 DGA DGA . O 5 HOH A 1 1008 1008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCW . . . F 3 136.382 131.255 122.814 1 75.16 ? C1 PCW 1004 A 1 HETATM 2 C C2 PCW . . . F 3 135.797 130.901 124.189 1 57.58 ? C2 PCW 1004 A 1 HETATM 3 C C3 PCW . . . F 3 135.546 129.395 124.283 1 64.03 ? C3 PCW 1004 A 1 HETATM 4 C C4 PCW . . . F 3 137.58 128.48 118.526 1 93.47 ? C4 PCW 1004 A 1 HETATM 5 C C5 PCW . . . F 3 136.535 127.323 118.515 1 95.82 ? C5 PCW 1004 A 1 HETATM 6 C C6 PCW . . . F 3 137.838 126.452 116.651 1 107.51 ? C6 PCW 1004 A 1 HETATM 7 C C7 PCW . . . F 3 137.964 125.387 118.801 1 79.49 ? C7 PCW 1004 A 1 HETATM 8 C C8 PCW . . . F 3 135.965 125.215 117.494 1 100.69 ? C8 PCW 1004 A 1 HETATM 9 C C11 PCW . . . F 3 133.437 128.333 124.684 1 67.89 ? C11 PCW 1004 A 1 HETATM 10 C C12 PCW . . . F 3 133.821 126.879 125.03 1 43.2 ? C12 PCW 1004 A 1 HETATM 11 C C13 PCW . . . F 3 134.383 126.812 126.475 1 44.74 ? C13 PCW 1004 A 1 HETATM 12 C C14 PCW . . . F 3 135.852 126.333 126.423 1 52.06 ? C14 PCW 1004 A 1 HETATM 13 C C15 PCW . . . F 3 136.08 125.28 127.527 1 50.6 ? C15 PCW 1004 A 1 HETATM 14 C C16 PCW . . . F 3 136.263 126.013 128.873 1 47.12 ? C16 PCW 1004 A 1 HETATM 15 C C17 PCW . . . F 3 137.085 125.155 129.866 1 59.43 ? C17 PCW 1004 A 1 HETATM 16 C C18 PCW . . . F 3 137.981 124.145 129.111 1 75.54 ? C18 PCW 1004 A 1 HETATM 17 C C19 PCW . . . F 3 138.464 123.044 130.089 1 79.25 ? C19 PCW 1004 A 1 HETATM 18 C C20 PCW . . . F 3 139.574 123.401 130.745 1 66.85 ? C20 PCW 1004 A 1 HETATM 19 C C21 PCW . . . F 3 140.716 123.144 131.757 1 56.41 ? C21 PCW 1004 A 1 HETATM 20 C C22 PCW . . . F 3 140.121 122.956 133.176 1 71.91 ? C22 PCW 1004 A 1 HETATM 21 C C23 PCW . . . F 3 139.32 124.224 133.576 1 73.45 ? C23 PCW 1004 A 1 HETATM 22 C C24 PCW . . . F 3 139.896 124.853 134.872 1 75.56 ? C24 PCW 1004 A 1 HETATM 23 C C25 PCW . . . F 3 140.398 123.745 135.836 1 88.73 ? C25 PCW 1004 A 1 HETATM 24 C C26 PCW . . . F 3 139.487 123.689 137.092 1 87 ? C26 PCW 1004 A 1 HETATM 25 C C27 PCW . . . F 3 138.876 122.268 137.234 1 88.52 ? C27 PCW 1004 A 1 HETATM 26 C C28 PCW . . . F 3 138.958 121.823 138.713 1 72.78 ? C28 PCW 1004 A 1 HETATM 27 C C31 PCW . . . F 3 137.742 130.468 125.548 1 39.49 ? C31 PCW 1004 A 1 HETATM 28 C C32 PCW . . . F 3 137.886 129.918 126.991 1 27.87 ? C32 PCW 1004 A 1 HETATM 29 C C33 PCW . . . F 3 139.297 129.313 127.157 1 32.19 ? C33 PCW 1004 A 1 HETATM 30 C C34 PCW . . . F 3 140.047 130.055 128.291 1 29.95 ? C34 PCW 1004 A 1 HETATM 31 C C35 PCW . . . F 3 139.32 129.809 129.633 1 21.73 ? C35 PCW 1004 A 1 HETATM 32 C C36 PCW . . . F 3 140.175 128.867 130.517 1 28.26 ? C36 PCW 1004 A 1 HETATM 33 C C37 PCW . . . F 3 139.272 128.256 131.616 1 46.26 ? C37 PCW 1004 A 1 HETATM 34 C C38 PCW . . . F 3 139.456 129.06 132.928 1 27.67 ? C38 PCW 1004 A 1 HETATM 35 C C39 PCW . . . F 3 138.596 128.433 134.052 1 45.09 ? C39 PCW 1004 A 1 HETATM 36 C C40 PCW . . . F 3 137.257 128.52 133.998 1 56.8 ? C40 PCW 1004 A 1 HETATM 37 C C41 PCW . . . F 3 136.4 127.895 135.123 1 59.7 ? C41 PCW 1004 A 1 HETATM 38 C C42 PCW . . . F 3 136.912 128.399 136.503 1 70.53 ? C42 PCW 1004 A 1 HETATM 39 C C43 PCW . . . F 3 136.795 127.256 137.557 1 56.94 ? C43 PCW 1004 A 1 HETATM 40 C C44 PCW . . . F 3 138.198 126.976 138.168 1 81.94 ? C44 PCW 1004 A 1 HETATM 41 C C45 PCW . . . F 3 138.054 126.573 139.662 1 82.42 ? C45 PCW 1004 A 1 HETATM 42 C C46 PCW . . . F 3 139.32 125.798 140.112 1 83.84 ? C46 PCW 1004 A 1 HETATM 43 C C47 PCW . . . F 3 139.579 126.055 141.619 1 76.86 ? C47 PCW 1004 A 1 HETATM 44 C C48 PCW . . . F 3 140.158 124.783 142.277 1 72.48 ? C48 PCW 1004 A 1 HETATM 45 N N PCW . . . F 3 137.082 126.098 117.861 1 98.22 ? N PCW 1004 A 1 HETATM 46 O O2 PCW . . . F 3 136.667 131.336 125.212 1 49.18 ? O2 PCW 1004 A 1 HETATM 47 O O3 PCW . . . F 3 134.241 129.092 123.793 1 81.29 ? O3 PCW 1004 A 1 HETATM 48 O O11 PCW . . . F 3 132.466 128.814 125.16 1 65.58 ? O11 PCW 1004 A 1 HETATM 49 O O31 PCW . . . F 3 138.544 130.164 124.73 1 49.97 ? O31 PCW 1004 A 1 HETATM 50 O O1P PCW . . . F 3 137.16 131.487 119.98 1 105.63 ? O1P PCW 1004 A 1 HETATM 51 O O2P PCW . . . F 3 135.308 129.865 119.957 1 112.3 ? O2P PCW 1004 A 1 HETATM 52 O O3P PCW . . . F 3 136.727 130.073 122.113 1 85.73 ? O3P PCW 1004 A 1 HETATM 53 O O4P PCW . . . F 3 137.748 128.961 119.853 1 99.9 ? O4P PCW 1004 A 1 HETATM 54 P P PCW . . . F 3 136.713 130.121 120.448 1 134.38 ? P PCW 1004 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 54 #