data_8UL9
#
_model_server_result.job_id            0Ni28mipbhoO6ulxozn86w 
_model_server_result.datetime_utc      '2025-04-05 19:34:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ul9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1005}' 
#
_entry.id    8UL9 
#
_exptl.entry_id    8UL9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              787.121 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 1 1_555 A N GLY 2 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 B C ACE 1 B ACE 1 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 A OD1 ASP 96 A ASP 96 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc2 A OD2 ASP 96 A ASP 96 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc3 A OD1 ASP 121 A ASP 121 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc4 B OD1 ASP 96 B ASP 96 1_555 I MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc5 B OD1 ASP 96 B ASP 96 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc6 B OD2 ASP 96 B ASP 96 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? 
metalc ? metalc7 B OD2 ASP 99 B ASP 99 1_555 I MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc8 B OD2 ASP 117 B ASP 117 1_555 I MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc9 B OD1 ASP 117 B ASP 117 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc10 B OD1 ASP 121 B ASP 121 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc11 B OD2 ASP 121 B ASP 121 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
#
_chem_comp.formula           'C44 H85 N O8 P 1' 
_chem_comp.formula_weight    787.121 
_chem_comp.id                PCW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PCW sing 362 n n 
C1 O3P PCW sing 363 n n 
C1 H11 PCW sing 364 n n 
C1 H12 PCW sing 365 n n 
C2 C3 PCW sing 366 n n 
C2 O2 PCW sing 367 n n 
C2 H2 PCW sing 368 n n 
C3 O3 PCW sing 369 n n 
C3 H31 PCW sing 370 n n 
C3 H32 PCW sing 371 n n 
C4 C5 PCW sing 372 n n 
C4 O4P PCW sing 373 n n 
C4 H41 PCW sing 374 n n 
C4 H42 PCW sing 375 n n 
C5 N PCW sing 376 n n 
C5 H51 PCW sing 377 n n 
C5 H52 PCW sing 378 n n 
C6 N PCW sing 379 n n 
C6 H61 PCW sing 380 n n 
C6 H62 PCW sing 381 n n 
C6 H63 PCW sing 382 n n 
C7 N PCW sing 383 n n 
C7 H71 PCW sing 384 n n 
C7 H72 PCW sing 385 n n 
C7 H73 PCW sing 386 n n 
C8 N PCW sing 387 n n 
C8 H81 PCW sing 388 n n 
C8 H82 PCW sing 389 n n 
C8 H83 PCW sing 390 n n 
C11 C12 PCW sing 391 n n 
C11 O3 PCW sing 392 n n 
C11 O11 PCW doub 393 n n 
C12 C13 PCW sing 394 n n 
C12 H121 PCW sing 395 n n 
C12 H122 PCW sing 396 n n 
C13 C14 PCW sing 397 n n 
C13 H131 PCW sing 398 n n 
C13 H132 PCW sing 399 n n 
C14 C15 PCW sing 400 n n 
C14 H141 PCW sing 401 n n 
C14 H142 PCW sing 402 n n 
C15 C16 PCW sing 403 n n 
C15 H151 PCW sing 404 n n 
C15 H152 PCW sing 405 n n 
C16 C17 PCW sing 406 n n 
C16 H161 PCW sing 407 n n 
C16 H162 PCW sing 408 n n 
C17 C18 PCW sing 409 n n 
C17 H171 PCW sing 410 n n 
C17 H172 PCW sing 411 n n 
C18 C19 PCW sing 412 n n 
C18 H181 PCW sing 413 n n 
C18 H182 PCW sing 414 n n 
C19 C20 PCW doub 415 z n 
C19 H19 PCW sing 416 n n 
C20 C21 PCW sing 417 n n 
C20 H20 PCW sing 418 n n 
C21 C22 PCW sing 419 n n 
C21 H211 PCW sing 420 n n 
C21 H212 PCW sing 421 n n 
C22 C23 PCW sing 422 n n 
C22 H221 PCW sing 423 n n 
C22 H222 PCW sing 424 n n 
C23 C24 PCW sing 425 n n 
C23 H231 PCW sing 426 n n 
C23 H232 PCW sing 427 n n 
C24 C25 PCW sing 428 n n 
C24 H241 PCW sing 429 n n 
C24 H242 PCW sing 430 n n 
C25 C26 PCW sing 431 n n 
C25 H251 PCW sing 432 n n 
C25 H252 PCW sing 433 n n 
C26 C27 PCW sing 434 n n 
C26 H261 PCW sing 435 n n 
C26 H262 PCW sing 436 n n 
C27 C28 PCW sing 437 n n 
C27 H271 PCW sing 438 n n 
C27 H272 PCW sing 439 n n 
C28 H281 PCW sing 440 n n 
C28 H282 PCW sing 441 n n 
C28 H283 PCW sing 442 n n 
C31 C32 PCW sing 443 n n 
C31 O2 PCW sing 444 n n 
C31 O31 PCW doub 445 n n 
C32 C33 PCW sing 446 n n 
C32 H321 PCW sing 447 n n 
C32 H322 PCW sing 448 n n 
C33 C34 PCW sing 449 n n 
C33 H331 PCW sing 450 n n 
C33 H332 PCW sing 451 n n 
C34 C35 PCW sing 452 n n 
C34 H341 PCW sing 453 n n 
C34 H342 PCW sing 454 n n 
C35 C36 PCW sing 455 n n 
C35 H351 PCW sing 456 n n 
C35 H352 PCW sing 457 n n 
C36 C37 PCW sing 458 n n 
C36 H361 PCW sing 459 n n 
C36 H362 PCW sing 460 n n 
C37 C38 PCW sing 461 n n 
C37 H371 PCW sing 462 n n 
C37 H372 PCW sing 463 n n 
C38 C39 PCW sing 464 n n 
C38 H381 PCW sing 465 n n 
C38 H382 PCW sing 466 n n 
C39 C40 PCW doub 467 z n 
C39 H39 PCW sing 468 n n 
C40 C41 PCW sing 469 n n 
C40 H40 PCW sing 470 n n 
C41 C42 PCW sing 471 n n 
C41 H411 PCW sing 472 n n 
C41 H412 PCW sing 473 n n 
C42 C43 PCW sing 474 n n 
C42 H421 PCW sing 475 n n 
C42 H422 PCW sing 476 n n 
C43 C44 PCW sing 477 n n 
C43 H431 PCW sing 478 n n 
C43 H432 PCW sing 479 n n 
C44 C45 PCW sing 480 n n 
C44 H441 PCW sing 481 n n 
C44 H442 PCW sing 482 n n 
C45 C46 PCW sing 483 n n 
C45 H451 PCW sing 484 n n 
C45 H452 PCW sing 485 n n 
C46 C47 PCW sing 486 n n 
C46 H461 PCW sing 487 n n 
C46 H462 PCW sing 488 n n 
C47 C48 PCW sing 489 n n 
C47 H471 PCW sing 490 n n 
C47 H472 PCW sing 491 n n 
C48 H481 PCW sing 492 n n 
C48 H482 PCW sing 493 n n 
C48 H483 PCW sing 494 n n 
O1P P PCW sing 495 n n 
O1P H1P PCW sing 496 n n 
O2P P PCW doub 497 n n 
O3P P PCW sing 498 n n 
O4P P PCW sing 499 n n 
#
_atom_sites.entry_id                     8UL9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 1001 1001 MG MG . 
D 2 MG A 1 1002 1002 MG MG . 
E 3 PCW A 1 1003 1003 PCW PCW . 
F 3 PCW A 1 1004 1004 PCW PCW . 
G 3 PCW A 1 1005 1005 PCW PCW . 
H 4 DGA A 1 1007 1007 DGA DGA . 
I 2 MG B 1 1001 1001 MG MG . 
J 2 MG B 1 1002 1002 MG MG . 
K 3 PCW B 1 1003 1003 PCW PCW . 
L 3 PCW B 1 1004 1004 PCW PCW . 
M 3 PCW B 1 1005 1005 PCW PCW . 
N 4 DGA B 1 1007 1007 DGA DGA . 
O 5 HOH A 1 1008 1008 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PCW . . . M 3 135.075 152.715 153.509 1 136.71 ? C1 PCW 1005 B 1 
HETATM 2 C C2 PCW . . . M 3 136.069 152.127 152.501 1 132.28 ? C2 PCW 1005 B 1 
HETATM 3 C C3 PCW . . . M 3 135.315 151.239 151.513 1 118.18 ? C3 PCW 1005 B 1 
HETATM 4 C C4 PCW . . . M 3 133.16 156.083 155.834 1 155.92 ? C4 PCW 1005 B 1 
HETATM 5 C C5 PCW . . . M 3 133.006 156.023 157.383 1 151.18 ? C5 PCW 1005 B 1 
HETATM 6 C C6 PCW . . . M 3 131.01 154.663 157.159 1 154.13 ? C6 PCW 1005 B 1 
HETATM 7 C C7 PCW . . . M 3 130.819 157.057 157.237 1 151.49 ? C7 PCW 1005 B 1 
HETATM 8 C C8 PCW . . . M 3 131.435 155.827 159.206 1 147.01 ? C8 PCW 1005 B 1 
HETATM 9 C C11 PCW . . . M 3 135.817 149.338 150.172 1 103 ? C11 PCW 1005 B 1 
HETATM 10 C C12 PCW . . . M 3 137.064 148.789 149.448 1 82.9 ? C12 PCW 1005 B 1 
HETATM 11 C C13 PCW . . . M 3 137.087 149.311 147.988 1 62.82 ? C13 PCW 1005 B 1 
HETATM 12 C C14 PCW . . . M 3 138.499 149.076 147.402 1 55.91 ? C14 PCW 1005 B 1 
HETATM 13 C C15 PCW . . . M 3 138.398 148.059 146.245 1 58.58 ? C15 PCW 1005 B 1 
HETATM 14 C C16 PCW . . . M 3 137.536 148.653 145.109 1 64.95 ? C16 PCW 1005 B 1 
HETATM 15 C C17 PCW . . . M 3 138.397 148.885 143.841 1 74.36 ? C17 PCW 1005 B 1 
HETATM 16 C C18 PCW . . . M 3 139.529 147.835 143.749 1 64.22 ? C18 PCW 1005 B 1 
HETATM 17 C C19 PCW . . . M 3 140.896 148.554 143.637 1 61.42 ? C19 PCW 1005 B 1 
HETATM 18 C C20 PCW . . . M 3 141.492 148.664 144.827 1 55.7 ? C20 PCW 1005 B 1 
HETATM 19 C C21 PCW . . . M 3 142.648 149.111 145.753 1 60.03 ? C21 PCW 1005 B 1 
HETATM 20 C C22 PCW . . . M 3 143.127 150.523 145.325 1 73.59 ? C22 PCW 1005 B 1 
HETATM 21 C C23 PCW . . . M 3 143.766 151.244 146.541 1 81.73 ? C23 PCW 1005 B 1 
HETATM 22 C C24 PCW . . . M 3 142.761 152.28 147.108 1 83.58 ? C24 PCW 1005 B 1 
HETATM 23 C C25 PCW . . . M 3 142.836 152.362 148.659 1 85.78 ? C25 PCW 1005 B 1 
HETATM 24 C C26 PCW . . . M 3 143.911 151.401 149.236 1 74.97 ? C26 PCW 1005 B 1 
HETATM 25 C C27 PCW . . . M 3 143.754 151.295 150.778 1 77.29 ? C27 PCW 1005 B 1 
HETATM 26 C C28 PCW . . . M 3 142.26 151.15 151.152 1 90.53 ? C28 PCW 1005 B 1 
HETATM 27 C C31 PCW . . . M 3 138.102 153.257 152.031 1 127.01 ? C31 PCW 1005 B 1 
HETATM 28 C C32 PCW . . . M 3 139.106 153.13 150.854 1 107.55 ? C32 PCW 1005 B 1 
HETATM 29 C C33 PCW . . . M 3 138.402 153.498 149.525 1 102.21 ? C33 PCW 1005 B 1 
HETATM 30 C C34 PCW . . . M 3 139.321 153.111 148.335 1 93.74 ? C34 PCW 1005 B 1 
HETATM 31 C C35 PCW . . . M 3 138.455 152.854 147.076 1 97.58 ? C35 PCW 1005 B 1 
HETATM 32 C C36 PCW . . . M 3 138.73 153.953 146.016 1 103.14 ? C36 PCW 1005 B 1 
HETATM 33 C C37 PCW . . . M 3 138.963 153.286 144.636 1 97.2 ? C37 PCW 1005 B 1 
HETATM 34 C C38 PCW . . . M 3 140.337 153.731 144.072 1 98.34 ? C38 PCW 1005 B 1 
HETATM 35 C C39 PCW . . . M 3 140.582 153.054 142.7 1 92.5 ? C39 PCW 1005 B 1 
HETATM 36 C C40 PCW . . . M 3 141.231 151.879 142.643 1 79.76 ? C40 PCW 1005 B 1 
HETATM 37 C C41 PCW . . . M 3 141.479 151.196 141.279 1 65.89 ? C41 PCW 1005 B 1 
HETATM 38 C C42 PCW . . . M 3 141.952 152.261 140.25 1 74.07 ? C42 PCW 1005 B 1 
HETATM 39 C C43 PCW . . . M 3 142.105 151.591 138.852 1 64.93 ? C43 PCW 1005 B 1 
HETATM 40 C C44 PCW . . . M 3 141.588 152.565 137.757 1 62.28 ? C44 PCW 1005 B 1 
HETATM 41 C C45 PCW . . . M 3 142.344 152.291 136.429 1 64.06 ? C45 PCW 1005 B 1 
HETATM 42 C C46 PCW . . . M 3 141.394 152.559 135.235 1 62.46 ? C46 PCW 1005 B 1 
HETATM 43 C C47 PCW . . . M 3 142.143 152.279 133.91 1 64.57 ? C47 PCW 1005 B 1 
HETATM 44 C C48 PCW . . . M 3 141.294 151.316 133.052 1 67.24 ? C48 PCW 1005 B 1 
HETATM 45 N N PCW . . . M 3 131.565 155.891 157.744 1 152.31 ? N PCW 1005 B 1 
HETATM 46 O O2 PCW . . . M 3 136.703 153.166 151.794 1 134.74 ? O2 PCW 1005 B 1 
HETATM 47 O O3 PCW . . . M 3 135.949 149.966 151.437 1 105.14 ? O3 PCW 1005 B 1 
HETATM 48 O O11 PCW . . . M 3 134.75 149.239 149.67 1 119.33 ? O11 PCW 1005 B 1 
HETATM 49 O O31 PCW . . . M 3 138.504 153.43 153.136 1 125.45 ? O31 PCW 1005 B 1 
HETATM 50 O O1P PCW . . . M 3 133.687 153.224 155.98 1 160.44 ? O1P PCW 1005 B 1 
HETATM 51 O O2P PCW . . . M 3 135.774 154.049 157.009 1 141.42 ? O2P PCW 1005 B 1 
HETATM 52 O O3P PCW . . . M 3 135.771 153.488 154.472 1 144.73 ? O3P PCW 1005 B 1 
HETATM 53 O O4P PCW . . . M 3 134.461 155.653 155.461 1 150.72 ? O4P PCW 1005 B 1 
HETATM 54 P P PCW . . . M 3 134.913 154.083 155.769 1 157.39 ? P PCW 1005 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           54 
#