data_8ULD # _model_server_result.job_id DCGToy4J9KiheFHkVGCENA _model_server_result.datetime_utc '2024-11-19 20:45:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uld # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8ULD # _exptl.entry_id 8ULD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 655.757 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(benzyloxy)carbonyl]-4-fluoro-L-phenylalanyl-N-{(2S,3R)-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]-4-[(propan-2-yl)amino]butan-2-yl}-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.29 _cell.angle_gamma 90 _cell.entry_id 8ULD _cell.length_a 108.835 _cell.length_b 81.918 _cell.length_c 53.786 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ULD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -13.275992 0 52.121798 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 165 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C40 _struct_conn.ptnr2_label_comp_id WYR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id WYR _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.608 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H46 F N5 O7' _chem_comp.formula_weight 655.757 _chem_comp.id WYR _chem_comp.mon_nstd_flag . _chem_comp.name N-[(benzyloxy)carbonyl]-4-fluoro-L-phenylalanyl-N-{(2S,3R)-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]-4-[(propan-2-yl)amino]butan-2-yl}-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GSK3487016A # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C23 WYR sing 385 n n C22 O21 WYR sing 386 n n C03 C02 WYR sing 387 n n C23 C28 WYR doub 388 n y C23 C24 WYR sing 389 n y C28 C27 WYR sing 390 n y O21 C19 WYR sing 391 n n C01 C02 WYR sing 392 n n C27 C26 WYR doub 393 n y C24 C25 WYR doub 394 n y C02 C04 WYR sing 395 n n C26 C25 WYR sing 396 n y O20 C19 WYR doub 397 n n C19 N18 WYR sing 398 n n C04 C05 WYR sing 399 n n N18 C09 WYR sing 400 n n C05 N06 WYR sing 401 n n C05 C29 WYR sing 402 n n N06 C07 WYR sing 403 n n C07 O08 WYR doub 404 n n C07 C09 WYR sing 405 n n C09 C10 WYR sing 406 n n C29 N31 WYR sing 407 n n C29 O30 WYR doub 408 n n N31 C32 WYR sing 409 n n O41 C40 WYR sing 410 n n C40 C32 WYR sing 411 n n C40 C42 WYR sing 412 n n C10 C11 WYR sing 413 n n O39 C38 WYR doub 414 n n C32 C33 WYR sing 415 n n C33 C34 WYR sing 416 n n C11 C17 WYR doub 417 n y C11 C12 WYR sing 418 n y C17 C16 WYR sing 419 n y C34 C38 WYR sing 420 n n C34 C35 WYR sing 421 n n C38 N37 WYR sing 422 n n C12 C13 WYR doub 423 n y C42 N44 WYR sing 424 n n C42 O43 WYR doub 425 n n C16 C14 WYR doub 426 n y C13 C14 WYR sing 427 n y N44 C45 WYR sing 428 n n C14 F15 WYR sing 429 n n N37 C36 WYR sing 430 n n C35 C36 WYR sing 431 n n C47 C45 WYR sing 432 n n C45 C46 WYR sing 433 n n C32 H1 WYR sing 434 n n C33 H2 WYR sing 435 n n C33 H3 WYR sing 436 n n C34 H4 WYR sing 437 n n C35 H5 WYR sing 438 n n C35 H6 WYR sing 439 n n C36 H7 WYR sing 440 n n C36 H8 WYR sing 441 n n C40 H9 WYR sing 442 n n O41 H10 WYR sing 443 n n C45 H11 WYR sing 444 n n C46 H12 WYR sing 445 n n C46 H13 WYR sing 446 n n C46 H14 WYR sing 447 n n C47 H15 WYR sing 448 n n C47 H16 WYR sing 449 n n C47 H17 WYR sing 450 n n C01 H18 WYR sing 451 n n C01 H19 WYR sing 452 n n C01 H20 WYR sing 453 n n C02 H21 WYR sing 454 n n C03 H22 WYR sing 455 n n C03 H23 WYR sing 456 n n C03 H24 WYR sing 457 n n C04 H25 WYR sing 458 n n C04 H26 WYR sing 459 n n C05 H27 WYR sing 460 n n N06 H28 WYR sing 461 n n C09 H29 WYR sing 462 n n C10 H30 WYR sing 463 n n C10 H31 WYR sing 464 n n C12 H32 WYR sing 465 n n C13 H33 WYR sing 466 n n C16 H34 WYR sing 467 n n C17 H35 WYR sing 468 n n N18 H36 WYR sing 469 n n C22 H37 WYR sing 470 n n C22 H38 WYR sing 471 n n C24 H39 WYR sing 472 n n C25 H40 WYR sing 473 n n C26 H41 WYR sing 474 n n C27 H42 WYR sing 475 n n C28 H43 WYR sing 476 n n N31 H44 WYR sing 477 n n N37 H45 WYR sing 478 n n N44 H46 WYR sing 479 n n # _atom_sites.entry_id 8ULD _atom_sites.fract_transf_matrix[1][1] 0.009188 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002341 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WYR A 1 401 1000 WYR 016 . C 3 EDO A 1 402 1 EDO EDO . D 3 EDO A 1 403 2 EDO EDO . E 4 HOH A 1 501 137 HOH HOH . E 4 HOH A 2 502 117 HOH HOH . E 4 HOH A 3 503 124 HOH HOH . E 4 HOH A 4 504 16 HOH HOH . E 4 HOH A 5 505 121 HOH HOH . E 4 HOH A 6 506 112 HOH HOH . E 4 HOH A 7 507 26 HOH HOH . E 4 HOH A 8 508 80 HOH HOH . E 4 HOH A 9 509 102 HOH HOH . E 4 HOH A 10 510 10 HOH HOH . E 4 HOH A 11 511 125 HOH HOH . E 4 HOH A 12 512 23 HOH HOH . E 4 HOH A 13 513 36 HOH HOH . E 4 HOH A 14 514 19 HOH HOH . E 4 HOH A 15 515 85 HOH HOH . E 4 HOH A 16 516 44 HOH HOH . E 4 HOH A 17 517 51 HOH HOH . E 4 HOH A 18 518 14 HOH HOH . E 4 HOH A 19 519 5 HOH HOH . E 4 HOH A 20 520 104 HOH HOH . E 4 HOH A 21 521 127 HOH HOH . E 4 HOH A 22 522 56 HOH HOH . E 4 HOH A 23 523 86 HOH HOH . E 4 HOH A 24 524 91 HOH HOH . E 4 HOH A 25 525 57 HOH HOH . E 4 HOH A 26 526 96 HOH HOH . E 4 HOH A 27 527 122 HOH HOH . E 4 HOH A 28 528 1 HOH HOH . E 4 HOH A 29 529 114 HOH HOH . E 4 HOH A 30 530 21 HOH HOH . E 4 HOH A 31 531 3 HOH HOH . E 4 HOH A 32 532 22 HOH HOH . E 4 HOH A 33 533 116 HOH HOH . E 4 HOH A 34 534 42 HOH HOH . E 4 HOH A 35 535 58 HOH HOH . E 4 HOH A 36 536 79 HOH HOH . E 4 HOH A 37 537 123 HOH HOH . E 4 HOH A 38 538 33 HOH HOH . E 4 HOH A 39 539 95 HOH HOH . E 4 HOH A 40 540 100 HOH HOH . E 4 HOH A 41 541 55 HOH HOH . E 4 HOH A 42 542 45 HOH HOH . E 4 HOH A 43 543 34 HOH HOH . E 4 HOH A 44 544 72 HOH HOH . E 4 HOH A 45 545 113 HOH HOH . E 4 HOH A 46 546 68 HOH HOH . E 4 HOH A 47 547 2 HOH HOH . E 4 HOH A 48 548 6 HOH HOH . E 4 HOH A 49 549 35 HOH HOH . E 4 HOH A 50 550 18 HOH HOH . E 4 HOH A 51 551 24 HOH HOH . E 4 HOH A 52 552 74 HOH HOH . E 4 HOH A 53 553 63 HOH HOH . E 4 HOH A 54 554 8 HOH HOH . E 4 HOH A 55 555 53 HOH HOH . E 4 HOH A 56 556 15 HOH HOH . E 4 HOH A 57 557 69 HOH HOH . E 4 HOH A 58 558 39 HOH HOH . E 4 HOH A 59 559 31 HOH HOH . E 4 HOH A 60 560 101 HOH HOH . E 4 HOH A 61 561 38 HOH HOH . E 4 HOH A 62 562 73 HOH HOH . E 4 HOH A 63 563 115 HOH HOH . E 4 HOH A 64 564 128 HOH HOH . E 4 HOH A 65 565 52 HOH HOH . E 4 HOH A 66 566 12 HOH HOH . E 4 HOH A 67 567 88 HOH HOH . E 4 HOH A 68 568 60 HOH HOH . E 4 HOH A 69 569 106 HOH HOH . E 4 HOH A 70 570 120 HOH HOH . E 4 HOH A 71 571 62 HOH HOH . E 4 HOH A 72 572 59 HOH HOH . E 4 HOH A 73 573 54 HOH HOH . E 4 HOH A 74 574 40 HOH HOH . E 4 HOH A 75 575 25 HOH HOH . E 4 HOH A 76 576 87 HOH HOH . E 4 HOH A 77 577 37 HOH HOH . E 4 HOH A 78 578 76 HOH HOH . E 4 HOH A 79 579 119 HOH HOH . E 4 HOH A 80 580 30 HOH HOH . E 4 HOH A 81 581 43 HOH HOH . E 4 HOH A 82 582 107 HOH HOH . E 4 HOH A 83 583 48 HOH HOH . E 4 HOH A 84 584 9 HOH HOH . E 4 HOH A 85 585 103 HOH HOH . E 4 HOH A 86 586 50 HOH HOH . E 4 HOH A 87 587 93 HOH HOH . E 4 HOH A 88 588 41 HOH HOH . E 4 HOH A 89 589 27 HOH HOH . E 4 HOH A 90 590 75 HOH HOH . E 4 HOH A 91 591 46 HOH HOH . E 4 HOH A 92 592 78 HOH HOH . E 4 HOH A 93 593 89 HOH HOH . E 4 HOH A 94 594 133 HOH HOH . E 4 HOH A 95 595 17 HOH HOH . E 4 HOH A 96 596 131 HOH HOH . E 4 HOH A 97 597 47 HOH HOH . E 4 HOH A 98 598 105 HOH HOH . E 4 HOH A 99 599 129 HOH HOH . E 4 HOH A 100 600 130 HOH HOH . E 4 HOH A 101 601 135 HOH HOH . E 4 HOH A 102 602 132 HOH HOH . E 4 HOH A 103 603 118 HOH HOH . E 4 HOH A 104 604 49 HOH HOH . E 4 HOH A 105 605 136 HOH HOH . E 4 HOH A 106 606 110 HOH HOH . E 4 HOH A 107 607 126 HOH HOH . E 4 HOH A 108 608 134 HOH HOH . E 4 HOH A 109 609 109 HOH HOH . E 4 HOH A 110 610 90 HOH HOH . E 4 HOH A 111 611 70 HOH HOH . E 4 HOH A 112 612 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O30 WYR . . . B 2 17.767 -1.681 23.521 1 48.73 ? O30 WYR 401 A 1 HETATM 2 C C32 WYR . . . B 2 15.079 -2.646 23.721 1 45.47 ? C32 WYR 401 A 1 HETATM 3 C C33 WYR . . . B 2 13.735 -1.893 24.068 1 44.3 ? C33 WYR 401 A 1 HETATM 4 C C34 WYR . . . B 2 13.958 -0.433 24.49 1 44.3 ? C34 WYR 401 A 1 HETATM 5 C C35 WYR . . . B 2 14.548 -0.228 25.902 1 44.45 ? C35 WYR 401 A 1 HETATM 6 C C36 WYR . . . B 2 13.941 1.023 26.481 1 44.87 ? C36 WYR 401 A 1 HETATM 7 C C38 WYR . . . B 2 12.708 0.382 24.538 1 45.16 ? C38 WYR 401 A 1 HETATM 8 C C40 WYR . . . B 2 14.837 -4.201 23.494 1 45.82 ? C40 WYR 401 A 1 HETATM 9 O O41 WYR . . . B 2 16.079 -4.763 22.652 1 45.74 ? O41 WYR 401 A 1 HETATM 10 C C42 WYR . . . B 2 14.92 -4.901 24.856 1 48.42 ? C42 WYR 401 A 1 HETATM 11 C C45 WYR . . . B 2 16.344 -6.184 26.636 1 53.14 ? C45 WYR 401 A 1 HETATM 12 C C46 WYR . . . B 2 16.863 -5.199 27.754 1 52.88 ? C46 WYR 401 A 1 HETATM 13 C C47 WYR . . . B 2 17.337 -7.367 26.475 1 53.86 ? C47 WYR 401 A 1 HETATM 14 C C01 WYR . . . B 2 20.535 -2.808 18.867 1 52.49 ? C01 WYR 401 A 1 HETATM 15 C C02 WYR . . . B 2 19.043 -2.609 19.244 1 51.38 ? C02 WYR 401 A 1 HETATM 16 C C03 WYR . . . B 2 18.352 -1.594 18.287 1 51.3 ? C03 WYR 401 A 1 HETATM 17 C C04 WYR . . . B 2 18.893 -2.275 20.779 1 50.37 ? C04 WYR 401 A 1 HETATM 18 C C05 WYR . . . B 2 17.824 -1.167 21.183 1 49.03 ? C05 WYR 401 A 1 HETATM 19 N N06 WYR . . . B 2 18.425 0.138 21.408 1 49.78 ? N06 WYR 401 A 1 HETATM 20 C C07 WYR . . . B 2 17.65 1.271 21.807 1 54.35 ? C07 WYR 401 A 1 HETATM 21 O O08 WYR . . . B 2 16.437 1.167 21.951 1 48.49 ? O08 WYR 401 A 1 HETATM 22 C C09 WYR . . . B 2 18.318 2.717 22.094 1 59.89 ? C09 WYR 401 A 1 HETATM 23 C C10 WYR . . . B 2 17.895 3.257 23.529 1 65.11 ? C10 WYR 401 A 1 HETATM 24 C C11 WYR . . . B 2 18.962 4.168 24.229 1 72.51 ? C11 WYR 401 A 1 HETATM 25 C C12 WYR . . . B 2 18.669 5.51 24.648 1 74.58 ? C12 WYR 401 A 1 HETATM 26 C C13 WYR . . . B 2 19.648 6.343 25.287 1 75.07 ? C13 WYR 401 A 1 HETATM 27 C C14 WYR . . . B 2 20.954 5.823 25.508 1 76.2 ? C14 WYR 401 A 1 HETATM 28 F F15 WYR . . . B 2 21.896 6.591 26.109 1 78.87 ? F15 WYR 401 A 1 HETATM 29 C C16 WYR . . . B 2 21.289 4.504 25.108 1 75.39 ? C16 WYR 401 A 1 HETATM 30 C C17 WYR . . . B 2 20.295 3.696 24.478 1 75.03 ? C17 WYR 401 A 1 HETATM 31 N N18 WYR . . . B 2 17.981 3.731 21.028 1 60 ? N18 WYR 401 A 1 HETATM 32 C C19 WYR . . . B 2 18.811 3.92 19.906 1 65.63 ? C19 WYR 401 A 1 HETATM 33 O O20 WYR . . . B 2 19.959 3.474 19.884 1 68.66 ? O20 WYR 401 A 1 HETATM 34 O O21 WYR . . . B 2 18.39 4.621 18.771 1 65.99 ? O21 WYR 401 A 1 HETATM 35 C C22 WYR . . . B 2 19.357 5.246 17.863 1 65.98 ? C22 WYR 401 A 1 HETATM 36 C C23 WYR . . . B 2 20.235 6.438 18.489 1 66.32 ? C23 WYR 401 A 1 HETATM 37 C C24 WYR . . . B 2 21.523 6.182 19.058 1 66.47 ? C24 WYR 401 A 1 HETATM 38 C C25 WYR . . . B 2 22.314 7.236 19.605 1 66.5 ? C25 WYR 401 A 1 HETATM 39 C C26 WYR . . . B 2 21.83 8.571 19.598 1 65.53 ? C26 WYR 401 A 1 HETATM 40 C C27 WYR . . . B 2 20.559 8.842 19.038 1 65.58 ? C27 WYR 401 A 1 HETATM 41 C C28 WYR . . . B 2 19.779 7.783 18.494 1 64.37 ? C28 WYR 401 A 1 HETATM 42 C C29 WYR . . . B 2 17.092 -1.697 22.493 1 48.09 ? C29 WYR 401 A 1 HETATM 43 N N31 WYR . . . B 2 15.769 -2.125 22.529 1 46.16 ? N31 WYR 401 A 1 HETATM 44 N N37 WYR . . . B 2 12.691 1.205 25.659 1 44.68 ? N37 WYR 401 A 1 HETATM 45 O O39 WYR . . . B 2 11.861 0.24 23.59 1 43.35 ? O39 WYR 401 A 1 HETATM 46 O O43 WYR . . . B 2 13.877 -4.883 25.486 1 46.04 ? O43 WYR 401 A 1 HETATM 47 N N44 WYR . . . B 2 16.13 -5.489 25.317 1 50.85 ? N44 WYR 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #