data_8ULD # _model_server_result.job_id NB5Yajq8IAGOUBajUOO3DQ _model_server_result.datetime_utc '2024-11-19 20:24:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uld # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8ULD # _exptl.entry_id 8ULD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.29 _cell.angle_gamma 90 _cell.entry_id 8ULD _cell.length_a 108.835 _cell.length_b 81.918 _cell.length_c 53.786 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ULD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -13.275992 0 52.121798 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 165 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C40 _struct_conn.ptnr2_label_comp_id WYR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id WYR _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.608 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8ULD _atom_sites.fract_transf_matrix[1][1] 0.009188 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002341 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WYR A 1 401 1000 WYR 016 . C 3 EDO A 1 402 1 EDO EDO . D 3 EDO A 1 403 2 EDO EDO . E 4 HOH A 1 501 137 HOH HOH . E 4 HOH A 2 502 117 HOH HOH . E 4 HOH A 3 503 124 HOH HOH . E 4 HOH A 4 504 16 HOH HOH . E 4 HOH A 5 505 121 HOH HOH . E 4 HOH A 6 506 112 HOH HOH . E 4 HOH A 7 507 26 HOH HOH . E 4 HOH A 8 508 80 HOH HOH . E 4 HOH A 9 509 102 HOH HOH . E 4 HOH A 10 510 10 HOH HOH . E 4 HOH A 11 511 125 HOH HOH . E 4 HOH A 12 512 23 HOH HOH . E 4 HOH A 13 513 36 HOH HOH . E 4 HOH A 14 514 19 HOH HOH . E 4 HOH A 15 515 85 HOH HOH . E 4 HOH A 16 516 44 HOH HOH . E 4 HOH A 17 517 51 HOH HOH . E 4 HOH A 18 518 14 HOH HOH . E 4 HOH A 19 519 5 HOH HOH . E 4 HOH A 20 520 104 HOH HOH . E 4 HOH A 21 521 127 HOH HOH . E 4 HOH A 22 522 56 HOH HOH . E 4 HOH A 23 523 86 HOH HOH . E 4 HOH A 24 524 91 HOH HOH . E 4 HOH A 25 525 57 HOH HOH . E 4 HOH A 26 526 96 HOH HOH . E 4 HOH A 27 527 122 HOH HOH . E 4 HOH A 28 528 1 HOH HOH . E 4 HOH A 29 529 114 HOH HOH . E 4 HOH A 30 530 21 HOH HOH . E 4 HOH A 31 531 3 HOH HOH . E 4 HOH A 32 532 22 HOH HOH . E 4 HOH A 33 533 116 HOH HOH . E 4 HOH A 34 534 42 HOH HOH . E 4 HOH A 35 535 58 HOH HOH . E 4 HOH A 36 536 79 HOH HOH . E 4 HOH A 37 537 123 HOH HOH . E 4 HOH A 38 538 33 HOH HOH . E 4 HOH A 39 539 95 HOH HOH . E 4 HOH A 40 540 100 HOH HOH . E 4 HOH A 41 541 55 HOH HOH . E 4 HOH A 42 542 45 HOH HOH . E 4 HOH A 43 543 34 HOH HOH . E 4 HOH A 44 544 72 HOH HOH . E 4 HOH A 45 545 113 HOH HOH . E 4 HOH A 46 546 68 HOH HOH . E 4 HOH A 47 547 2 HOH HOH . E 4 HOH A 48 548 6 HOH HOH . E 4 HOH A 49 549 35 HOH HOH . E 4 HOH A 50 550 18 HOH HOH . E 4 HOH A 51 551 24 HOH HOH . E 4 HOH A 52 552 74 HOH HOH . E 4 HOH A 53 553 63 HOH HOH . E 4 HOH A 54 554 8 HOH HOH . E 4 HOH A 55 555 53 HOH HOH . E 4 HOH A 56 556 15 HOH HOH . E 4 HOH A 57 557 69 HOH HOH . E 4 HOH A 58 558 39 HOH HOH . E 4 HOH A 59 559 31 HOH HOH . E 4 HOH A 60 560 101 HOH HOH . E 4 HOH A 61 561 38 HOH HOH . E 4 HOH A 62 562 73 HOH HOH . E 4 HOH A 63 563 115 HOH HOH . E 4 HOH A 64 564 128 HOH HOH . E 4 HOH A 65 565 52 HOH HOH . E 4 HOH A 66 566 12 HOH HOH . E 4 HOH A 67 567 88 HOH HOH . E 4 HOH A 68 568 60 HOH HOH . E 4 HOH A 69 569 106 HOH HOH . E 4 HOH A 70 570 120 HOH HOH . E 4 HOH A 71 571 62 HOH HOH . E 4 HOH A 72 572 59 HOH HOH . E 4 HOH A 73 573 54 HOH HOH . E 4 HOH A 74 574 40 HOH HOH . E 4 HOH A 75 575 25 HOH HOH . E 4 HOH A 76 576 87 HOH HOH . E 4 HOH A 77 577 37 HOH HOH . E 4 HOH A 78 578 76 HOH HOH . E 4 HOH A 79 579 119 HOH HOH . E 4 HOH A 80 580 30 HOH HOH . E 4 HOH A 81 581 43 HOH HOH . E 4 HOH A 82 582 107 HOH HOH . E 4 HOH A 83 583 48 HOH HOH . E 4 HOH A 84 584 9 HOH HOH . E 4 HOH A 85 585 103 HOH HOH . E 4 HOH A 86 586 50 HOH HOH . E 4 HOH A 87 587 93 HOH HOH . E 4 HOH A 88 588 41 HOH HOH . E 4 HOH A 89 589 27 HOH HOH . E 4 HOH A 90 590 75 HOH HOH . E 4 HOH A 91 591 46 HOH HOH . E 4 HOH A 92 592 78 HOH HOH . E 4 HOH A 93 593 89 HOH HOH . E 4 HOH A 94 594 133 HOH HOH . E 4 HOH A 95 595 17 HOH HOH . E 4 HOH A 96 596 131 HOH HOH . E 4 HOH A 97 597 47 HOH HOH . E 4 HOH A 98 598 105 HOH HOH . E 4 HOH A 99 599 129 HOH HOH . E 4 HOH A 100 600 130 HOH HOH . E 4 HOH A 101 601 135 HOH HOH . E 4 HOH A 102 602 132 HOH HOH . E 4 HOH A 103 603 118 HOH HOH . E 4 HOH A 104 604 49 HOH HOH . E 4 HOH A 105 605 136 HOH HOH . E 4 HOH A 106 606 110 HOH HOH . E 4 HOH A 107 607 126 HOH HOH . E 4 HOH A 108 608 134 HOH HOH . E 4 HOH A 109 609 109 HOH HOH . E 4 HOH A 110 610 90 HOH HOH . E 4 HOH A 111 611 70 HOH HOH . E 4 HOH A 112 612 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 -7.187 1.91 27.697 1 45.86 ? C1 EDO 403 A 1 HETATM 2 O O1 EDO . . . D 3 -6.97 0.683 27.002 0.5 45.54 ? O1 EDO 403 A 1 HETATM 3 C C2 EDO . . . D 3 -8.549 2.484 27.341 1 47.49 ? C2 EDO 403 A 1 HETATM 4 O O2 EDO . . . D 3 -8.453 3.616 26.464 1 49.91 ? O2 EDO 403 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 377 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #