data_8ULG # _model_server_result.job_id h3YrMmKtTYtC51_9Vu-yfg _model_server_result.datetime_utc '2024-10-11 01:26:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ulg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 8ULG # _exptl.entry_id 8ULG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 345.205 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ULG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ULG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 563 A HIS 563 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A NE2 HIS 599 A HIS 599 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc3 A OD2 ASP 600 A ASP 600 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc4 B NE2 HIS 561 B HIS 561 1_555 K ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 B NE2 HIS 597 B HIS 597 1_555 K ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc6 B OD1 ASP 598 B ASP 598 1_555 J MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc7 B OD2 ASP 598 B ASP 598 1_555 K ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 266 n n PA O2A PCG doub 267 n n PA O5' PCG sing 268 n n PA O3' PCG sing 269 n n O1A HO1A PCG sing 270 n n O5' C5' PCG sing 271 n n C5' C4' PCG sing 272 n n C5' "H5'1" PCG sing 273 n n C5' "H5'2" PCG sing 274 n n C4' O4' PCG sing 275 n n C4' C3' PCG sing 276 n n C4' H4' PCG sing 277 n n O4' C1' PCG sing 278 n n C3' O3' PCG sing 279 n n C3' C2' PCG sing 280 n n C3' H3' PCG sing 281 n n C2' O2' PCG sing 282 n n C2' C1' PCG sing 283 n n C2' H2' PCG sing 284 n n O2' HO2' PCG sing 285 n n C1' N9 PCG sing 286 n n C1' H1' PCG sing 287 n n N9 C8 PCG sing 288 n y N9 C4 PCG sing 289 n y C8 N7 PCG doub 290 n y C8 H8 PCG sing 291 n n N7 C5 PCG sing 292 n y C5 C6 PCG sing 293 n n C5 C4 PCG doub 294 n y C6 O6 PCG doub 295 n n C6 N1 PCG sing 296 n n N1 C2 PCG sing 297 n n N1 HN1 PCG sing 298 n n C2 N2 PCG sing 299 n n C2 N3 PCG doub 300 n n N2 HN21 PCG sing 301 n n N2 HN22 PCG sing 302 n n N3 C4 PCG sing 303 n n # _atom_sites.entry_id 8ULG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 PCG A 1 901 901 PCG PCG . F 5 MG A 1 902 902 MG MG . G 6 ZN A 1 903 903 ZN ZN . H 7 IBM A 1 904 904 IBM IBM . I 4 PCG B 1 901 901 PCG PCG . J 5 MG B 1 902 902 MG MG . K 6 ZN B 1 903 903 ZN ZN . L 7 IBM B 1 904 904 IBM IBM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . E 4 160.736 142.938 225.137 1 101.92 ? PA PCG 901 A 1 HETATM 2 O O1A PCG . . . E 4 160.905 141.33 224.828 1 109.34 ? O1A PCG 901 A 1 HETATM 3 O O2A PCG . . . E 4 159.335 143.31 224.963 1 95.34 ? O2A PCG 901 A 1 HETATM 4 O O5' PCG . . . E 4 161.67 143.817 223.97 1 100.36 ? O5' PCG 901 A 1 HETATM 5 C C5' PCG . . . E 4 163.169 143.962 224.358 1 98.96 ? C5' PCG 901 A 1 HETATM 6 C C4' PCG . . . E 4 163.539 142.976 225.489 1 95.22 ? C4' PCG 901 A 1 HETATM 7 O O4' PCG . . . E 4 164.748 142.888 225.851 1 99.01 ? O4' PCG 901 A 1 HETATM 8 C C3' PCG . . . E 4 162.563 143.347 226.968 1 96.14 ? C3' PCG 901 A 1 HETATM 9 O O3' PCG . . . E 4 161.162 143.224 226.748 1 95.09 ? O3' PCG 901 A 1 HETATM 10 C C2' PCG . . . E 4 163.075 142.729 227.849 1 96.97 ? C2' PCG 901 A 1 HETATM 11 O O2' PCG . . . E 4 162.539 141.346 227.883 1 97.84 ? O2' PCG 901 A 1 HETATM 12 C C1' PCG . . . E 4 164.726 142.712 227.435 1 101.42 ? C1' PCG 901 A 1 HETATM 13 N N9 PCG . . . E 4 165.338 143.623 227.974 1 101.98 ? N9 PCG 901 A 1 HETATM 14 C C8 PCG . . . E 4 165.065 144.942 227.967 1 97.17 ? C8 PCG 901 A 1 HETATM 15 N N7 PCG . . . E 4 166.012 145.567 228.69 1 94.34 ? N7 PCG 901 A 1 HETATM 16 C C5 PCG . . . E 4 166.863 144.65 229.135 1 96.14 ? C5 PCG 901 A 1 HETATM 17 C C6 PCG . . . E 4 168.125 144.76 229.997 1 97.69 ? C6 PCG 901 A 1 HETATM 18 O O6 PCG . . . E 4 168.487 145.82 230.385 1 98.72 ? O6 PCG 901 A 1 HETATM 19 N N1 PCG . . . E 4 168.867 143.586 230.334 1 95.77 ? N1 PCG 901 A 1 HETATM 20 C C2 PCG . . . E 4 168.42 142.302 229.858 1 96.28 ? C2 PCG 901 A 1 HETATM 21 N N2 PCG . . . E 4 169.167 141.106 230.197 1 96.37 ? N2 PCG 901 A 1 HETATM 22 N N3 PCG . . . E 4 167.215 142.204 229.036 1 97.68 ? N3 PCG 901 A 1 HETATM 23 C C4 PCG . . . E 4 166.445 143.432 228.687 1 99.22 ? C4 PCG 901 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #