data_8UM0 # _model_server_result.job_id NXdTlqMnp520mSLRFW-h5w _model_server_result.datetime_utc '2024-11-20 12:40:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8um0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":409}' # _entry.id 8UM0 # _exptl.entry_id 8UM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.75 _cell.angle_gamma 90 _cell.entry_id 8UM0 _cell.length_a 93.184 _cell.length_b 64.691 _cell.length_c 65.578 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 1 NAG 2 n B GAL 2 B 2 GAL B 2 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3 X1F . A X1F 401 1_555 B C6 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8UM0 _atom_sites.fract_transf_matrix[1][1] 0.010731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002428 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 X1F A 1 401 1 X1F DRG . D 4 EDO A 1 402 1 EDO EDO . E 4 EDO A 1 403 2 EDO EDO . F 4 EDO A 1 404 3 EDO EDO . G 4 EDO A 1 405 4 EDO EDO . H 4 EDO A 1 406 5 EDO EDO . I 4 EDO A 1 407 6 EDO EDO . J 4 EDO A 1 408 7 EDO EDO . K 4 EDO A 1 409 8 EDO EDO . L 4 EDO A 1 410 9 EDO EDO . M 4 EDO A 1 411 10 EDO EDO . N 5 HOH A 1 501 63 HOH HOH . N 5 HOH A 2 502 42 HOH HOH . N 5 HOH A 3 503 88 HOH HOH . N 5 HOH A 4 504 43 HOH HOH . N 5 HOH A 5 505 51 HOH HOH . N 5 HOH A 6 506 87 HOH HOH . N 5 HOH A 7 507 41 HOH HOH . N 5 HOH A 8 508 67 HOH HOH . N 5 HOH A 9 509 57 HOH HOH . N 5 HOH A 10 510 18 HOH HOH . N 5 HOH A 11 511 6 HOH HOH . N 5 HOH A 12 512 124 HOH HOH . N 5 HOH A 13 513 58 HOH HOH . N 5 HOH A 14 514 66 HOH HOH . N 5 HOH A 15 515 74 HOH HOH . N 5 HOH A 16 516 62 HOH HOH . N 5 HOH A 17 517 103 HOH HOH . N 5 HOH A 18 518 5 HOH HOH . N 5 HOH A 19 519 46 HOH HOH . N 5 HOH A 20 520 94 HOH HOH . N 5 HOH A 21 521 13 HOH HOH . N 5 HOH A 22 522 76 HOH HOH . N 5 HOH A 23 523 7 HOH HOH . N 5 HOH A 24 524 77 HOH HOH . N 5 HOH A 25 525 48 HOH HOH . N 5 HOH A 26 526 36 HOH HOH . N 5 HOH A 27 527 19 HOH HOH . N 5 HOH A 28 528 53 HOH HOH . N 5 HOH A 29 529 92 HOH HOH . N 5 HOH A 30 530 15 HOH HOH . N 5 HOH A 31 531 129 HOH HOH . N 5 HOH A 32 532 1 HOH HOH . N 5 HOH A 33 533 89 HOH HOH . N 5 HOH A 34 534 17 HOH HOH . N 5 HOH A 35 535 52 HOH HOH . N 5 HOH A 36 536 27 HOH HOH . N 5 HOH A 37 537 119 HOH HOH . N 5 HOH A 38 538 31 HOH HOH . N 5 HOH A 39 539 30 HOH HOH . N 5 HOH A 40 540 78 HOH HOH . N 5 HOH A 41 541 4 HOH HOH . N 5 HOH A 42 542 25 HOH HOH . N 5 HOH A 43 543 34 HOH HOH . N 5 HOH A 44 544 102 HOH HOH . N 5 HOH A 45 545 49 HOH HOH . N 5 HOH A 46 546 69 HOH HOH . N 5 HOH A 47 547 73 HOH HOH . N 5 HOH A 48 548 11 HOH HOH . N 5 HOH A 49 549 86 HOH HOH . N 5 HOH A 50 550 2 HOH HOH . N 5 HOH A 51 551 70 HOH HOH . N 5 HOH A 52 552 16 HOH HOH . N 5 HOH A 53 553 54 HOH HOH . N 5 HOH A 54 554 68 HOH HOH . N 5 HOH A 55 555 72 HOH HOH . N 5 HOH A 56 556 14 HOH HOH . N 5 HOH A 57 557 45 HOH HOH . N 5 HOH A 58 558 44 HOH HOH . N 5 HOH A 59 559 117 HOH HOH . N 5 HOH A 60 560 127 HOH HOH . N 5 HOH A 61 561 96 HOH HOH . N 5 HOH A 62 562 71 HOH HOH . N 5 HOH A 63 563 56 HOH HOH . N 5 HOH A 64 564 110 HOH HOH . N 5 HOH A 65 565 20 HOH HOH . N 5 HOH A 66 566 60 HOH HOH . N 5 HOH A 67 567 61 HOH HOH . N 5 HOH A 68 568 121 HOH HOH . N 5 HOH A 69 569 104 HOH HOH . N 5 HOH A 70 570 39 HOH HOH . N 5 HOH A 71 571 8 HOH HOH . N 5 HOH A 72 572 22 HOH HOH . N 5 HOH A 73 573 29 HOH HOH . N 5 HOH A 74 574 32 HOH HOH . N 5 HOH A 75 575 82 HOH HOH . N 5 HOH A 76 576 101 HOH HOH . N 5 HOH A 77 577 128 HOH HOH . N 5 HOH A 78 578 108 HOH HOH . N 5 HOH A 79 579 9 HOH HOH . N 5 HOH A 80 580 47 HOH HOH . N 5 HOH A 81 581 85 HOH HOH . N 5 HOH A 82 582 21 HOH HOH . N 5 HOH A 83 583 40 HOH HOH . N 5 HOH A 84 584 125 HOH HOH . N 5 HOH A 85 585 12 HOH HOH . N 5 HOH A 86 586 37 HOH HOH . N 5 HOH A 87 587 97 HOH HOH . N 5 HOH A 88 588 23 HOH HOH . N 5 HOH A 89 589 80 HOH HOH . N 5 HOH A 90 590 35 HOH HOH . N 5 HOH A 91 591 10 HOH HOH . N 5 HOH A 92 592 109 HOH HOH . N 5 HOH A 93 593 26 HOH HOH . N 5 HOH A 94 594 81 HOH HOH . N 5 HOH A 95 595 59 HOH HOH . N 5 HOH A 96 596 93 HOH HOH . N 5 HOH A 97 597 107 HOH HOH . N 5 HOH A 98 598 55 HOH HOH . N 5 HOH A 99 599 118 HOH HOH . N 5 HOH A 100 600 120 HOH HOH . N 5 HOH A 101 601 28 HOH HOH . N 5 HOH A 102 602 24 HOH HOH . N 5 HOH A 103 603 100 HOH HOH . N 5 HOH A 104 604 64 HOH HOH . N 5 HOH A 105 605 75 HOH HOH . N 5 HOH A 106 606 65 HOH HOH . N 5 HOH A 107 607 50 HOH HOH . N 5 HOH A 108 608 33 HOH HOH . N 5 HOH A 109 609 111 HOH HOH . N 5 HOH A 110 610 91 HOH HOH . N 5 HOH A 111 611 114 HOH HOH . N 5 HOH A 112 612 130 HOH HOH . N 5 HOH A 113 613 123 HOH HOH . N 5 HOH A 114 614 95 HOH HOH . N 5 HOH A 115 615 126 HOH HOH . N 5 HOH A 116 616 122 HOH HOH . N 5 HOH A 117 617 38 HOH HOH . N 5 HOH A 118 618 90 HOH HOH . N 5 HOH A 119 619 112 HOH HOH . N 5 HOH A 120 620 3 HOH HOH . N 5 HOH A 121 621 106 HOH HOH . N 5 HOH A 122 622 116 HOH HOH . N 5 HOH A 123 623 105 HOH HOH . N 5 HOH A 124 624 84 HOH HOH . N 5 HOH A 125 625 113 HOH HOH . N 5 HOH A 126 626 79 HOH HOH . N 5 HOH A 127 627 115 HOH HOH . N 5 HOH A 128 628 99 HOH HOH . N 5 HOH A 129 629 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . K 4 20.982 4.312 37.955 1 47.29 ? C1 EDO 409 A 1 HETATM 2 O O1 EDO . . . K 4 20.784 4.989 36.709 1 46.19 ? O1 EDO 409 A 1 HETATM 3 C C2 EDO . . . K 4 21.439 5.315 39.007 1 46.18 ? C2 EDO 409 A 1 HETATM 4 O O2 EDO . . . K 4 20.408 6.283 39.23 1 42.63 ? O2 EDO 409 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #