data_8UNH
#
_model_server_result.job_id            O9SupcA0wtFXfN15gJJ5Ww 
_model_server_result.datetime_utc      '2024-11-22 21:50:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8unh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":401}' 
#
_entry.id    8UNH 
#
_exptl.entry_id    8UNH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8UNH 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UNH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 108 B GLU 108 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc2 I O1B AGS . B AGS 401 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc3 B OG1 THR 57 E THR 57 1_555 L MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc4 K O2G AGS . E AGS 401 1_555 L MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc5 K O2B AGS . E AGS 401 1_555 L MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG S1G AGS doub 1 n n 
PG O2G AGS sing 2 n n 
PG O3G AGS sing 3 n n 
PG O3B AGS sing 4 n n 
PB O1B AGS doub 5 n n 
PB O2B AGS sing 6 n n 
PB O3B AGS sing 7 n n 
PB O3A AGS sing 8 n n 
PA O1A AGS doub 9 n n 
PA O2A AGS sing 10 n n 
PA O3A AGS sing 11 n n 
PA O5' AGS sing 12 n n 
O5' C5' AGS sing 13 n n 
C5' C4' AGS sing 14 n n 
C4' O4' AGS sing 15 n n 
C4' C3' AGS sing 16 n n 
O4' C1' AGS sing 17 n n 
C3' O3' AGS sing 18 n n 
C3' C2' AGS sing 19 n n 
C2' O2' AGS sing 20 n n 
C2' C1' AGS sing 21 n n 
C1' N9 AGS sing 22 n n 
N9 C8 AGS sing 23 n y 
N9 C4 AGS sing 24 n y 
C8 N7 AGS doub 25 n y 
N7 C5 AGS sing 26 n y 
C5 C6 AGS sing 27 n y 
C5 C4 AGS doub 28 n y 
C6 N6 AGS sing 29 n n 
C6 N1 AGS doub 30 n y 
N1 C2 AGS sing 31 n y 
C2 N3 AGS doub 32 n y 
N3 C4 AGS sing 33 n y 
O2G HOG2 AGS sing 34 n n 
O3G H21 AGS sing 35 n n 
O2B HOB2 AGS sing 36 n n 
O2A HOA2 AGS sing 37 n n 
C5' "H5'1" AGS sing 38 n n 
C5' "H5'2" AGS sing 39 n n 
C4' H4' AGS sing 40 n n 
C3' H3' AGS sing 41 n n 
O3' HO3' AGS sing 42 n n 
C2' H2' AGS sing 43 n n 
O2' HO2' AGS sing 44 n n 
C1' H1' AGS sing 45 n n 
C8 H8 AGS sing 46 n n 
N6 HN61 AGS sing 47 n n 
N6 HN62 AGS sing 48 n n 
C2 H2 AGS sing 49 n n 
#
_atom_sites.entry_id                     8UNH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 4 AGS B 1 401 700 AGS AGS . 
J 5 MG B 1 402 800 MG MG . 
K 4 AGS E 1 401 700 AGS AGS . 
L 5 MG E 1 402 800 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . K 4 115.893 118.533 72.374 1 141.66 ? PG AGS 401 E 1 
HETATM 2 S S1G AGS . . . K 4 117.463 117.439 72.732 1 141.66 ? S1G AGS 401 E 1 
HETATM 3 O O2G AGS . . . K 4 114.868 118.381 73.532 1 141.66 ? O2G AGS 401 E 1 
HETATM 4 O O3G AGS . . . K 4 115.238 118.075 71.04 1 141.66 ? O3G AGS 401 E 1 
HETATM 5 P PB AGS . . . K 4 115.241 121.141 72.644 1 141.66 ? PB AGS 401 E 1 
HETATM 6 O O1B AGS . . . K 4 114.514 121.603 71.444 1 141.66 ? O1B AGS 401 E 1 
HETATM 7 O O2B AGS . . . K 4 114.322 120.501 73.687 1 141.66 ? O2B AGS 401 E 1 
HETATM 8 O O3B AGS . . . K 4 116.298 120.03 72.264 1 141.66 ? O3B AGS 401 E 1 
HETATM 9 P PA AGS . . . K 4 115.067 123.455 74.054 1 141.66 ? PA AGS 401 E 1 
HETATM 10 O O1A AGS . . . K 4 114.671 123.047 75.412 1 141.66 ? O1A AGS 401 E 1 
HETATM 11 O O2A AGS . . . K 4 113.902 123.693 73.094 1 141.66 ? O2A AGS 401 E 1 
HETATM 12 O O3A AGS . . . K 4 115.954 122.354 73.36 1 141.66 ? O3A AGS 401 E 1 
HETATM 13 O O5' AGS . . . K 4 115.989 124.725 74.176 1 141.66 ? O5' AGS 401 E 1 
HETATM 14 C C5' AGS . . . K 4 116.069 125.486 75.392 1 141.66 ? C5' AGS 401 E 1 
HETATM 15 C C4' AGS . . . K 4 117.44 126.105 75.46 1 141.66 ? C4' AGS 401 E 1 
HETATM 16 O O4' AGS . . . K 4 117.987 126.195 74.129 1 141.66 ? O4' AGS 401 E 1 
HETATM 17 C C3' AGS . . . K 4 117.495 127.52 76.021 1 141.66 ? C3' AGS 401 E 1 
HETATM 18 O O3' AGS . . . K 4 118.733 127.758 76.68 1 141.66 ? O3' AGS 401 E 1 
HETATM 19 C C2' AGS . . . K 4 117.341 128.387 74.772 1 141.66 ? C2' AGS 401 E 1 
HETATM 20 O O2' AGS . . . K 4 118.013 129.632 74.914 1 141.66 ? O2' AGS 401 E 1 
HETATM 21 C C1' AGS . . . K 4 118.022 127.541 73.696 1 141.66 ? C1' AGS 401 E 1 
HETATM 22 N N9 AGS . . . K 4 117.373 127.613 72.393 1 141.66 ? N9 AGS 401 E 1 
HETATM 23 C C8 AGS . . . K 4 116.929 126.563 71.636 1 141.66 ? C8 AGS 401 E 1 
HETATM 24 N N7 AGS . . . K 4 116.378 126.919 70.501 1 141.66 ? N7 AGS 401 E 1 
HETATM 25 C C5 AGS . . . K 4 116.462 128.301 70.515 1 141.66 ? C5 AGS 401 E 1 
HETATM 26 C C6 AGS . . . K 4 116.055 129.284 69.595 1 141.66 ? C6 AGS 401 E 1 
HETATM 27 N N6 AGS . . . K 4 115.455 129.011 68.434 1 141.66 ? N6 AGS 401 E 1 
HETATM 28 N N1 AGS . . . K 4 116.288 130.576 69.913 1 141.66 ? N1 AGS 401 E 1 
HETATM 29 C C2 AGS . . . K 4 116.888 130.854 71.074 1 141.66 ? C2 AGS 401 E 1 
HETATM 30 N N3 AGS . . . K 4 117.316 130.014 72.018 1 141.66 ? N3 AGS 401 E 1 
HETATM 31 C C4 AGS . . . K 4 117.072 128.745 71.676 1 141.66 ? C4 AGS 401 E 1 
HETATM 32 H HOG2 AGS . . . K 4 114.777 117.524 73.735 1 141.66 ? HOG2 AGS 401 E 1 
HETATM 33 H H21 AGS . . . K 4 115.417 118.666 70.405 1 141.66 ? H21 AGS 401 E 1 
HETATM 34 H "H5'1" AGS . . . K 4 115.391 126.185 75.393 1 141.66 ? "H5'1" AGS 401 E 1 
HETATM 35 H "H5'2" AGS . . . K 4 115.942 124.902 76.159 1 141.66 ? "H5'2" AGS 401 E 1 
HETATM 36 H H4' AGS . . . K 4 118.014 125.533 75.995 1 141.66 ? H4' AGS 401 E 1 
HETATM 37 H H3' AGS . . . K 4 116.751 127.669 76.628 1 141.66 ? H3' AGS 401 E 1 
HETATM 38 H HO3' AGS . . . K 4 118.609 128.335 77.342 1 141.66 ? HO3' AGS 401 E 1 
HETATM 39 H H2' AGS . . . K 4 116.402 128.52 74.562 1 141.66 ? H2' AGS 401 E 1 
HETATM 40 H HO2' AGS . . . K 4 118.466 129.814 74.173 1 141.66 ? HO2' AGS 401 E 1 
HETATM 41 H H1' AGS . . . K 4 118.948 127.824 73.608 1 141.66 ? H1' AGS 401 E 1 
HETATM 42 H H8 AGS . . . K 4 117.017 125.638 71.911 1 141.66 ? H8 AGS 401 E 1 
HETATM 43 H HN61 AGS . . . K 4 115.821 128.401 67.868 1 141.66 ? HN61 AGS 401 E 1 
HETATM 44 H HN62 AGS . . . K 4 114.682 129.434 68.209 1 141.66 ? HN62 AGS 401 E 1 
HETATM 45 H H2 AGS . . . K 4 117.032 131.799 71.255 1 141.66 ? H2 AGS 401 E 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           45 
#