data_8UNH # _model_server_result.job_id bQihA3CBb7Aej5aJb1NJlA _model_server_result.datetime_utc '2024-11-05 23:05:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8unh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":401}' # _entry.id 8UNH # _exptl.entry_id 8UNH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.247 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UNH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 108 B GLU 108 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc2 I O1B AGS . B AGS 401 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc3 B OG1 THR 57 E THR 57 1_555 L MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc4 K O2G AGS . E AGS 401 1_555 L MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc5 K O2B AGS . E AGS 401 1_555 L MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? # _chem_comp.formula 'C10 H16 N5 O12 P3 S' _chem_comp.formula_weight 523.247 _chem_comp.id AGS _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG S1G AGS doub 1 n n PG O2G AGS sing 2 n n PG O3G AGS sing 3 n n PG O3B AGS sing 4 n n PB O1B AGS doub 5 n n PB O2B AGS sing 6 n n PB O3B AGS sing 7 n n PB O3A AGS sing 8 n n PA O1A AGS doub 9 n n PA O2A AGS sing 10 n n PA O3A AGS sing 11 n n PA O5' AGS sing 12 n n O5' C5' AGS sing 13 n n C5' C4' AGS sing 14 n n C4' O4' AGS sing 15 n n C4' C3' AGS sing 16 n n O4' C1' AGS sing 17 n n C3' O3' AGS sing 18 n n C3' C2' AGS sing 19 n n C2' O2' AGS sing 20 n n C2' C1' AGS sing 21 n n C1' N9 AGS sing 22 n n N9 C8 AGS sing 23 n y N9 C4 AGS sing 24 n y C8 N7 AGS doub 25 n y N7 C5 AGS sing 26 n y C5 C6 AGS sing 27 n y C5 C4 AGS doub 28 n y C6 N6 AGS sing 29 n n C6 N1 AGS doub 30 n y N1 C2 AGS sing 31 n y C2 N3 AGS doub 32 n y N3 C4 AGS sing 33 n y O2G HOG2 AGS sing 34 n n O3G H21 AGS sing 35 n n O2B HOB2 AGS sing 36 n n O2A HOA2 AGS sing 37 n n C5' "H5'1" AGS sing 38 n n C5' "H5'2" AGS sing 39 n n C4' H4' AGS sing 40 n n C3' H3' AGS sing 41 n n O3' HO3' AGS sing 42 n n C2' H2' AGS sing 43 n n O2' HO2' AGS sing 44 n n C1' H1' AGS sing 45 n n C8 H8 AGS sing 46 n n N6 HN61 AGS sing 47 n n N6 HN62 AGS sing 48 n n C2 H2 AGS sing 49 n n # _atom_sites.entry_id 8UNH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 AGS B 1 401 700 AGS AGS . J 5 MG B 1 402 800 MG MG . K 4 AGS E 1 401 700 AGS AGS . L 5 MG E 1 402 800 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG AGS . . . K 4 115.893 118.533 72.374 1 141.66 ? PG AGS 401 E 1 HETATM 2 S S1G AGS . . . K 4 117.463 117.439 72.732 1 141.66 ? S1G AGS 401 E 1 HETATM 3 O O2G AGS . . . K 4 114.868 118.381 73.532 1 141.66 ? O2G AGS 401 E 1 HETATM 4 O O3G AGS . . . K 4 115.238 118.075 71.04 1 141.66 ? O3G AGS 401 E 1 HETATM 5 P PB AGS . . . K 4 115.241 121.141 72.644 1 141.66 ? PB AGS 401 E 1 HETATM 6 O O1B AGS . . . K 4 114.514 121.603 71.444 1 141.66 ? O1B AGS 401 E 1 HETATM 7 O O2B AGS . . . K 4 114.322 120.501 73.687 1 141.66 ? O2B AGS 401 E 1 HETATM 8 O O3B AGS . . . K 4 116.298 120.03 72.264 1 141.66 ? O3B AGS 401 E 1 HETATM 9 P PA AGS . . . K 4 115.067 123.455 74.054 1 141.66 ? PA AGS 401 E 1 HETATM 10 O O1A AGS . . . K 4 114.671 123.047 75.412 1 141.66 ? O1A AGS 401 E 1 HETATM 11 O O2A AGS . . . K 4 113.902 123.693 73.094 1 141.66 ? O2A AGS 401 E 1 HETATM 12 O O3A AGS . . . K 4 115.954 122.354 73.36 1 141.66 ? O3A AGS 401 E 1 HETATM 13 O O5' AGS . . . K 4 115.989 124.725 74.176 1 141.66 ? O5' AGS 401 E 1 HETATM 14 C C5' AGS . . . K 4 116.069 125.486 75.392 1 141.66 ? C5' AGS 401 E 1 HETATM 15 C C4' AGS . . . K 4 117.44 126.105 75.46 1 141.66 ? C4' AGS 401 E 1 HETATM 16 O O4' AGS . . . K 4 117.987 126.195 74.129 1 141.66 ? O4' AGS 401 E 1 HETATM 17 C C3' AGS . . . K 4 117.495 127.52 76.021 1 141.66 ? C3' AGS 401 E 1 HETATM 18 O O3' AGS . . . K 4 118.733 127.758 76.68 1 141.66 ? O3' AGS 401 E 1 HETATM 19 C C2' AGS . . . K 4 117.341 128.387 74.772 1 141.66 ? C2' AGS 401 E 1 HETATM 20 O O2' AGS . . . K 4 118.013 129.632 74.914 1 141.66 ? O2' AGS 401 E 1 HETATM 21 C C1' AGS . . . K 4 118.022 127.541 73.696 1 141.66 ? C1' AGS 401 E 1 HETATM 22 N N9 AGS . . . K 4 117.373 127.613 72.393 1 141.66 ? N9 AGS 401 E 1 HETATM 23 C C8 AGS . . . K 4 116.929 126.563 71.636 1 141.66 ? C8 AGS 401 E 1 HETATM 24 N N7 AGS . . . K 4 116.378 126.919 70.501 1 141.66 ? N7 AGS 401 E 1 HETATM 25 C C5 AGS . . . K 4 116.462 128.301 70.515 1 141.66 ? C5 AGS 401 E 1 HETATM 26 C C6 AGS . . . K 4 116.055 129.284 69.595 1 141.66 ? C6 AGS 401 E 1 HETATM 27 N N6 AGS . . . K 4 115.455 129.011 68.434 1 141.66 ? N6 AGS 401 E 1 HETATM 28 N N1 AGS . . . K 4 116.288 130.576 69.913 1 141.66 ? N1 AGS 401 E 1 HETATM 29 C C2 AGS . . . K 4 116.888 130.854 71.074 1 141.66 ? C2 AGS 401 E 1 HETATM 30 N N3 AGS . . . K 4 117.316 130.014 72.018 1 141.66 ? N3 AGS 401 E 1 HETATM 31 C C4 AGS . . . K 4 117.072 128.745 71.676 1 141.66 ? C4 AGS 401 E 1 HETATM 32 H HOG2 AGS . . . K 4 114.777 117.524 73.735 1 141.66 ? HOG2 AGS 401 E 1 HETATM 33 H H21 AGS . . . K 4 115.417 118.666 70.405 1 141.66 ? H21 AGS 401 E 1 HETATM 34 H "H5'1" AGS . . . K 4 115.391 126.185 75.393 1 141.66 ? "H5'1" AGS 401 E 1 HETATM 35 H "H5'2" AGS . . . K 4 115.942 124.902 76.159 1 141.66 ? "H5'2" AGS 401 E 1 HETATM 36 H H4' AGS . . . K 4 118.014 125.533 75.995 1 141.66 ? H4' AGS 401 E 1 HETATM 37 H H3' AGS . . . K 4 116.751 127.669 76.628 1 141.66 ? H3' AGS 401 E 1 HETATM 38 H HO3' AGS . . . K 4 118.609 128.335 77.342 1 141.66 ? HO3' AGS 401 E 1 HETATM 39 H H2' AGS . . . K 4 116.402 128.52 74.562 1 141.66 ? H2' AGS 401 E 1 HETATM 40 H HO2' AGS . . . K 4 118.466 129.814 74.173 1 141.66 ? HO2' AGS 401 E 1 HETATM 41 H H1' AGS . . . K 4 118.948 127.824 73.608 1 141.66 ? H1' AGS 401 E 1 HETATM 42 H H8 AGS . . . K 4 117.017 125.638 71.911 1 141.66 ? H8 AGS 401 E 1 HETATM 43 H HN61 AGS . . . K 4 115.821 128.401 67.868 1 141.66 ? HN61 AGS 401 E 1 HETATM 44 H HN62 AGS . . . K 4 114.682 129.434 68.209 1 141.66 ? HN62 AGS 401 E 1 HETATM 45 H H2 AGS . . . K 4 117.032 131.799 71.255 1 141.66 ? H2 AGS 401 E 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 45 #