data_8UNI
#
_model_server_result.job_id            zYUPG8wX5upLYN468iJM3A 
_model_server_result.datetime_utc      '2025-03-12 18:26:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8uni 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    8UNI 
#
_exptl.entry_id    8UNI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              815.576 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-[5-methanoyl-7,8-dimethyl-2,4-bis(oxidanylidene)-1H-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8UNI 
_cell.length_a            117.782 
_cell.length_b            178.172 
_cell.length_c            234.19 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UNI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C28 H35 N9 O16 P2' 
_chem_comp.formula_weight    815.576 
_chem_comp.id                HUF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-[5-methanoyl-7,8-dimethyl-2,4-bis(oxidanylidene)-1H-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O33 C19 HUF doub 150 n n 
C19 N29 HUF sing 151 n n 
O37 C26 HUF sing 152 n n 
C24 N32 HUF sing 153 n n 
C24 C25 HUF sing 154 n n 
N29 C15 HUF sing 155 n n 
N29 C20 HUF sing 156 n n 
N32 C21 HUF sing 157 n n 
N32 C14 HUF sing 158 n n 
C15 C14 HUF doub 159 n y 
C15 C16 HUF sing 160 n y 
C20 C21 HUF doub 161 n n 
C20 C23 HUF sing 162 n n 
C21 N30 HUF sing 163 n n 
C14 C13 HUF sing 164 n y 
C16 C17 HUF doub 165 n y 
N30 C22 HUF sing 166 n n 
C13 C12 HUF doub 167 n y 
C23 N31 HUF sing 168 n n 
C23 O35 HUF doub 169 n n 
C22 N31 HUF sing 170 n n 
C22 O34 HUF doub 171 n n 
C17 C12 HUF sing 172 n y 
C17 C18 HUF sing 173 n n 
C12 C11 HUF sing 174 n n 
C26 C25 HUF sing 175 n n 
C26 C27 HUF sing 176 n n 
C25 O36 HUF sing 177 n n 
O2B PB HUF doub 178 n n 
C28 C27 HUF sing 179 n n 
C28 O1B HUF sing 180 n n 
C27 O38 HUF sing 181 n n 
PB O3A HUF sing 182 n n 
PB O1B HUF sing 183 n n 
PB O3B HUF sing 184 n n 
O3A PA HUF sing 185 n n 
O2A PA HUF doub 186 n n 
PA O1A HUF sing 187 n n 
PA O5' HUF sing 188 n n 
C5' O5' HUF sing 189 n n 
C5' C4' HUF sing 190 n n 
N7 C8 HUF doub 191 n y 
N7 C5 HUF sing 192 n y 
C8 N9 HUF sing 193 n y 
N6 C6 HUF sing 194 n n 
O4' C4' HUF sing 195 n n 
O4' C1' HUF sing 196 n n 
C5 C6 HUF doub 197 n y 
C5 C4 HUF sing 198 n y 
C4' C3' HUF sing 199 n n 
N9 C1' HUF sing 200 n n 
N9 C4 HUF sing 201 n y 
C6 N1 HUF sing 202 n y 
C2' C3' HUF sing 203 n n 
C2' C1' HUF sing 204 n n 
C2' O2' HUF sing 205 n n 
C3' O3' HUF sing 206 n n 
C4 N3 HUF doub 207 n y 
N1 C2 HUF doub 208 n y 
N3 C2 HUF sing 209 n y 
O1A H1 HUF sing 210 n n 
O3B H2 HUF sing 211 n n 
C5' H3 HUF sing 212 n n 
C5' H4 HUF sing 213 n n 
C4' H5 HUF sing 214 n n 
C3' H6 HUF sing 215 n n 
O3' H7 HUF sing 216 n n 
C2' H8 HUF sing 217 n n 
O2' H9 HUF sing 218 n n 
C1' H10 HUF sing 219 n n 
C8 H11 HUF sing 220 n n 
C2 H12 HUF sing 221 n n 
N6 H13 HUF sing 222 n n 
N6 H14 HUF sing 223 n n 
C11 H15 HUF sing 224 n n 
C11 H16 HUF sing 225 n n 
C11 H17 HUF sing 226 n n 
C13 H18 HUF sing 227 n n 
C16 H19 HUF sing 228 n n 
C18 H20 HUF sing 229 n n 
C18 H21 HUF sing 230 n n 
C18 H22 HUF sing 231 n n 
C19 H23 HUF sing 232 n n 
C24 H24 HUF sing 233 n n 
C24 H25 HUF sing 234 n n 
C25 H26 HUF sing 235 n n 
C26 H27 HUF sing 236 n n 
C27 H28 HUF sing 237 n n 
C28 H29 HUF sing 238 n n 
C28 H30 HUF sing 239 n n 
N30 H31 HUF sing 240 n n 
N31 H32 HUF sing 241 n n 
O36 H33 HUF sing 242 n n 
O37 H34 HUF sing 243 n n 
O38 H35 HUF sing 244 n n 
#
_atom_sites.entry_id                     8UNI 
_atom_sites.fract_transf_matrix[1][1]    0.00849 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005613 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00427 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          D 
_pdbx_nonpoly_scheme.entity_id        4 
_pdbx_nonpoly_scheme.mon_id           HUF 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      901 
_pdbx_nonpoly_scheme.auth_seq_num     901 
_pdbx_nonpoly_scheme.pdb_mon_id       HUF 
_pdbx_nonpoly_scheme.auth_mon_id      DRG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2A HUF . . . D 4 -5.938 67.129 87.44 1 99.18 ? O2A HUF 901 A 1 
HETATM 2 P PA HUF . . . D 4 -6.681 66.946 88.722 1 103.3 ? PA HUF 901 A 1 
HETATM 3 O O1A HUF . . . D 4 -8.155 66.715 88.659 1 95.35 -1 O1A HUF 901 A 1 
HETATM 4 O O3A HUF . . . D 4 -6.006 65.743 89.541 1 96.64 ? O3A HUF 901 A 1 
HETATM 5 P PB HUF . . . D 4 -6.514 64.854 90.775 1 93.32 ? PB HUF 901 A 1 
HETATM 6 O O3B HUF . . . D 4 -7.468 65.656 91.597 1 99.52 ? O3B HUF 901 A 1 
HETATM 7 O O2B HUF . . . D 4 -5.336 64.226 91.445 1 85.73 -1 O2B HUF 901 A 1 
HETATM 8 O O1B HUF . . . D 4 -7.338 63.705 90.018 1 93.43 ? O1B HUF 901 A 1 
HETATM 9 O O5' HUF . . . D 4 -6.379 68.186 89.694 1 98.07 ? O5' HUF 901 A 1 
HETATM 10 C C5' HUF . . . D 4 -5.821 69.395 89.121 1 94.34 ? C5' HUF 901 A 1 
HETATM 11 C C4' HUF . . . D 4 -6.883 70.467 89.087 1 92.49 ? C4' HUF 901 A 1 
HETATM 12 C C3' HUF . . . D 4 -7.473 70.787 87.707 1 98.62 ? C3' HUF 901 A 1 
HETATM 13 O O3' HUF . . . D 4 -8.86 71.087 87.795 1 100.5 ? O3' HUF 901 A 1 
HETATM 14 C C2' HUF . . . D 4 -6.66 72.008 87.269 1 95.9 ? C2' HUF 901 A 1 
HETATM 15 O O2' HUF . . . D 4 -7.345 72.814 86.336 1 100.75 ? O2' HUF 901 A 1 
HETATM 16 C C1' HUF . . . D 4 -6.469 72.725 88.601 1 92.96 ? C1' HUF 901 A 1 
HETATM 17 O O4' HUF . . . D 4 -6.315 71.713 89.57 1 90.97 ? O4' HUF 901 A 1 
HETATM 18 N N9 HUF . . . D 4 -5.293 73.586 88.643 1 92.13 ? N9 HUF 901 A 1 
HETATM 19 C C4 HUF . . . D 4 -5.231 74.891 89.072 1 91.03 ? C4 HUF 901 A 1 
HETATM 20 C C5 HUF . . . D 4 -3.912 75.275 88.921 1 89.25 ? C5 HUF 901 A 1 
HETATM 21 N N7 HUF . . . D 4 -3.16 74.23 88.407 1 87.15 ? N7 HUF 901 A 1 
HETATM 22 C C8 HUF . . . D 4 -4.019 73.253 88.259 1 90.28 ? C8 HUF 901 A 1 
HETATM 23 N N3 HUF . . . D 4 -6.234 75.65 89.542 1 88.45 ? N3 HUF 901 A 1 
HETATM 24 C C2 HUF . . . D 4 -5.801 76.866 89.862 1 89.27 ? C2 HUF 901 A 1 
HETATM 25 N N1 HUF . . . D 4 -4.567 77.378 89.773 1 90.29 ? N1 HUF 901 A 1 
HETATM 26 C C6 HUF . . . D 4 -3.575 76.59 89.295 1 93.35 ? C6 HUF 901 A 1 
HETATM 27 N N6 HUF . . . D 4 -2.346 77.092 89.204 1 95.49 ? N6 HUF 901 A 1 
HETATM 28 C C11 HUF . . . D 4 -5.757 62.885 81.602 1 94.24 ? C11 HUF 901 A 1 
HETATM 29 C C12 HUF . . . D 4 -6.442 61.55 81.701 1 99.82 ? C12 HUF 901 A 1 
HETATM 30 C C13 HUF . . . D 4 -6.614 60.954 82.922 1 106.02 ? C13 HUF 901 A 1 
HETATM 31 C C14 HUF . . . D 4 -7.243 59.716 83.034 1 105.46 ? C14 HUF 901 A 1 
HETATM 32 C C15 HUF . . . D 4 -7.719 59.068 81.88 1 104.53 ? C15 HUF 901 A 1 
HETATM 33 C C16 HUF . . . D 4 -7.543 59.672 80.636 1 108.17 ? C16 HUF 901 A 1 
HETATM 34 C C17 HUF . . . D 4 -6.922 60.887 80.52 1 102.5 ? C17 HUF 901 A 1 
HETATM 35 C C18 HUF . . . D 4 -6.748 61.519 79.166 1 99.64 ? C18 HUF 901 A 1 
HETATM 36 C C19 HUF . . . D 4 -8.469 56.942 80.908 1 113.39 ? C19 HUF 901 A 1 
HETATM 37 C C20 HUF . . . D 4 -8.84 57.4 83.296 1 106.82 ? C20 HUF 901 A 1 
HETATM 38 C C21 HUF . . . D 4 -8.344 58.073 84.439 1 107.19 ? C21 HUF 901 A 1 
HETATM 39 C C22 HUF . . . D 4 -9.691 56.711 85.884 1 105.09 ? C22 HUF 901 A 1 
HETATM 40 C C23 HUF . . . D 4 -9.771 56.364 83.463 1 104.14 ? C23 HUF 901 A 1 
HETATM 41 C C24 HUF . . . D 4 -6.627 59.563 85.45 1 102.04 ? C24 HUF 901 A 1 
HETATM 42 C C25 HUF . . . D 4 -7.5 60.176 86.528 1 101.32 ? C25 HUF 901 A 1 
HETATM 43 C C26 HUF . . . D 4 -6.733 61.241 87.316 1 96.11 ? C26 HUF 901 A 1 
HETATM 44 C C27 HUF . . . D 4 -7.611 62.046 88.276 1 97.69 ? C27 HUF 901 A 1 
HETATM 45 C C28 HUF . . . D 4 -6.999 63.378 88.642 1 101.77 ? C28 HUF 901 A 1 
HETATM 46 N N29 HUF . . . D 4 -8.365 57.793 82.002 1 107.14 ? N29 HUF 901 A 1 
HETATM 47 N N30 HUF . . . D 4 -8.78 57.718 85.695 1 106.36 ? N30 HUF 901 A 1 
HETATM 48 N N31 HUF . . . D 4 -10.154 56.07 84.761 1 108.4 ? N31 HUF 901 A 1 
HETATM 49 N N32 HUF . . . D 4 -7.426 59.098 84.291 1 105.01 ? N32 HUF 901 A 1 
HETATM 50 O O33 HUF . . . D 4 -8.236 55.739 80.967 1 119.72 ? O33 HUF 901 A 1 
HETATM 51 O O34 HUF . . . D 4 -10.065 56.408 87.005 1 95.63 ? O34 HUF 901 A 1 
HETATM 52 O O35 HUF . . . D 4 -10.255 55.721 82.53 1 99.2 ? O35 HUF 901 A 1 
HETATM 53 O O36 HUF . . . D 4 -8.651 60.767 85.933 1 99.6 ? O36 HUF 901 A 1 
HETATM 54 O O37 HUF . . . D 4 -5.684 60.619 88.051 1 91.04 ? O37 HUF 901 A 1 
HETATM 55 O O38 HUF . . . D 4 -8.894 62.262 87.684 1 98.28 ? O38 HUF 901 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           55 
#