data_8UO8 # _model_server_result.job_id r91T-pdlSIdfyQ6qO3Z6hw _model_server_result.datetime_utc '2024-11-23 07:41:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uo8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":705}' # _entry.id 8UO8 # _exptl.entry_id 8UO8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 566.642 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIDECANOYL-SN-GLYCERO-3-[PHOSPHO-L-SERINE] _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UO8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 492 A CYS 492 1_555 A SG CYS 512 A CYS 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 441 A ASN 441 1_555 B C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 491 A ASN 491 1_555 D C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 516 A ASN 516 1_555 C C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C26 H49 N O10 P -1' _chem_comp.formula_weight 566.642 _chem_comp.id PS1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIDECANOYL-SN-GLYCERO-3-[PHOSPHO-L-SERINE] _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PS1 sing 459 n n O2 P1 PS1 doub 460 n n P1 O3 PS1 sing 461 n n P1 O6 PS1 sing 462 n n O3 C1 PS1 sing 463 n n C1 C2 PS1 sing 464 n n C1 H1 PS1 sing 465 n n C1 H2 PS1 sing 466 n n C2 C3 PS1 sing 467 n n C2 N1 PS1 sing 468 n n C2 H3 PS1 sing 469 n n C3 O4 PS1 doub 470 n n C3 O5 PS1 sing 471 n n O5 H4 PS1 sing 472 n n N1 H5 PS1 sing 473 n n N1 H6 PS1 sing 474 n n O6 C4 PS1 sing 475 n n C4 C5 PS1 sing 476 n n C4 H7 PS1 sing 477 n n C4 H8 PS1 sing 478 n n C5 C6 PS1 sing 479 n n C5 O9 PS1 sing 480 n n C5 H9 PS1 sing 481 n n C6 O7 PS1 sing 482 n n C6 H10 PS1 sing 483 n n C6 H11 PS1 sing 484 n n O7 C7 PS1 sing 485 n n C7 O8 PS1 doub 486 n n C7 C8 PS1 sing 487 n n C8 C9 PS1 sing 488 n n C8 H12 PS1 sing 489 n n C8 H13 PS1 sing 490 n n C9 C10 PS1 sing 491 n n C9 H14 PS1 sing 492 n n C9 H15 PS1 sing 493 n n C10 C11 PS1 sing 494 n n C10 H16 PS1 sing 495 n n C10 H17 PS1 sing 496 n n C11 C12 PS1 sing 497 n n C11 H18 PS1 sing 498 n n C11 H19 PS1 sing 499 n n C12 C13 PS1 sing 500 n n C12 H20 PS1 sing 501 n n C12 H21 PS1 sing 502 n n C13 C14 PS1 sing 503 n n C13 H22 PS1 sing 504 n n C13 H23 PS1 sing 505 n n C14 C15 PS1 sing 506 n n C14 H24 PS1 sing 507 n n C14 H25 PS1 sing 508 n n C15 C16 PS1 sing 509 n n C15 H26 PS1 sing 510 n n C15 H27 PS1 sing 511 n n C16 H28 PS1 sing 512 n n C16 H29 PS1 sing 513 n n C16 H30 PS1 sing 514 n n O9 C17 PS1 sing 515 n n C17 O10 PS1 doub 516 n n C17 C18 PS1 sing 517 n n C18 C19 PS1 sing 518 n n C18 H31 PS1 sing 519 n n C18 H32 PS1 sing 520 n n C19 C20 PS1 sing 521 n n C19 H33 PS1 sing 522 n n C19 H34 PS1 sing 523 n n C20 C21 PS1 sing 524 n n C20 H35 PS1 sing 525 n n C20 H36 PS1 sing 526 n n C21 C22 PS1 sing 527 n n C21 H37 PS1 sing 528 n n C21 H38 PS1 sing 529 n n C22 C23 PS1 sing 530 n n C22 H39 PS1 sing 531 n n C22 H40 PS1 sing 532 n n C23 C24 PS1 sing 533 n n C23 H41 PS1 sing 534 n n C23 H42 PS1 sing 535 n n C24 C25 PS1 sing 536 n n C24 H43 PS1 sing 537 n n C24 H44 PS1 sing 538 n n C25 C26 PS1 sing 539 n n C25 H45 PS1 sing 540 n n C25 H46 PS1 sing 541 n n C26 H47 PS1 sing 542 n n C26 H48 PS1 sing 543 n n C26 H49 PS1 sing 544 n n # _atom_sites.entry_id 8UO8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 701 703 NAG NAG . C 2 NAG A 1 702 705 NAG NAG . D 2 NAG A 1 703 706 NAG NAG . E 3 X3U A 1 704 707 X3U 943 . F 4 PS1 A 1 705 711 PS1 PS1 . G 5 9Z9 A 1 706 715 9Z9 9Z9 . H 5 9Z9 A 1 707 716 9Z9 9Z9 . I 6 43Y A 1 708 723 43Y 43Y . J 7 Y01 A 1 709 724 Y01 Y01 . K 8 HOH A 1 801 722 HOH HOH . K 8 HOH A 2 802 714 HOH HOH . K 8 HOH A 3 803 721 HOH HOH . K 8 HOH A 4 804 712 HOH HOH . K 8 HOH A 5 805 719 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PS1 . . . F 4 119.302 91.978 120.734 1 38.16 ? O1 PS1 705 A 1 HETATM 2 O O2 PS1 . . . F 4 121.593 91.224 120.026 1 38.16 ? O2 PS1 705 A 1 HETATM 3 P P1 PS1 . . . F 4 120.128 91.394 119.567 1 38.16 ? P1 PS1 705 A 1 HETATM 4 O O3 PS1 . . . F 4 119.534 89.96 119.136 1 38.16 ? O3 PS1 705 A 1 HETATM 5 C C1 PS1 . . . F 4 118.142 90.136 118.858 1 38.16 ? C1 PS1 705 A 1 HETATM 6 C C2 PS1 . . . F 4 117.344 88.941 119.38 1 38.16 ? C2 PS1 705 A 1 HETATM 7 C C3 PS1 . . . F 4 116.414 89.4 120.473 1 38.16 ? C3 PS1 705 A 1 HETATM 8 O O4 PS1 . . . F 4 115.121 89.042 120.446 1 38.16 ? O4 PS1 705 A 1 HETATM 9 O O5 PS1 . . . F 4 116.831 90.091 121.373 1 38.16 ? O5 PS1 705 A 1 HETATM 10 N N1 PS1 . . . F 4 116.555 88.363 118.286 1 38.16 ? N1 PS1 705 A 1 HETATM 11 O O6 PS1 . . . F 4 120.084 92.4 118.312 1 38.16 ? O6 PS1 705 A 1 HETATM 12 C C4 PS1 . . . F 4 120.793 91.774 117.241 1 38.16 ? C4 PS1 705 A 1 HETATM 13 C C5 PS1 . . . F 4 121.788 92.771 116.642 1 38.16 ? C5 PS1 705 A 1 HETATM 14 C C6 PS1 . . . F 4 121.134 93.522 115.481 1 38.16 ? C6 PS1 705 A 1 HETATM 15 O O7 PS1 . . . F 4 122.134 94.342 114.821 1 38.16 ? O7 PS1 705 A 1 HETATM 16 C C7 PS1 . . . F 4 121.824 95.017 113.706 1 38.16 ? C7 PS1 705 A 1 HETATM 17 O O8 PS1 . . . F 4 121.944 96.219 113.674 1 38.16 ? O8 PS1 705 A 1 HETATM 18 C C8 PS1 . . . F 4 121.329 94.276 112.49 1 38.16 ? C8 PS1 705 A 1 HETATM 19 O O9 PS1 . . . F 4 122.19 93.725 117.659 1 38.16 ? O9 PS1 705 A 1 HETATM 20 C C17 PS1 . . . F 4 123.491 93.96 117.888 1 38.16 ? C17 PS1 705 A 1 HETATM 21 O O10 PS1 . . . F 4 123.935 93.865 119.007 1 38.16 ? O10 PS1 705 A 1 HETATM 22 C C18 PS1 . . . F 4 124.401 94.344 116.749 1 38.16 ? C18 PS1 705 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #