data_8UO8 # _model_server_result.job_id Bpp_zRjCEJw3tdU_1UVG8g _model_server_result.datetime_utc '2024-11-07 10:36:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uo8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":706}' # _entry.id 8UO8 # _exptl.entry_id 8UO8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 544.805 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UO8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 492 A CYS 492 1_555 A SG CYS 512 A CYS 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 441 A ASN 441 1_555 B C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 491 A ASN 491 1_555 D C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 516 A ASN 516 1_555 C C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C34 H56 O5' _chem_comp.formula_weight 544.805 _chem_comp.id 9Z9 _chem_comp.mon_nstd_flag . _chem_comp.name (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C26 9Z9 sing 53 n n O25 C24 9Z9 sing 54 n n C50 O49 9Z9 sing 55 n n O49 C48 9Z9 sing 56 n n C24 C23 9Z9 sing 57 n n C48 C23 9Z9 sing 58 n n C23 C22 9Z9 sing 59 n n C22 C21 9Z9 sing 60 n n C21 O20 9Z9 sing 61 n n O20 C17 9Z9 sing 62 n n C17 C18 9Z9 sing 63 n n C17 C16 9Z9 sing 64 n n C18 C19 9Z9 sing 65 n n C16 C13 9Z9 sing 66 n n C19 C11 9Z9 sing 67 n n C13 C11 9Z9 sing 68 n n C13 C14 9Z9 doub 69 n n C11 C12 9Z9 sing 70 n n C11 C08 9Z9 sing 71 n n C14 C15 9Z9 sing 72 n n C08 C09 9Z9 sing 73 n n C08 C07 9Z9 sing 74 n n C15 C07 9Z9 sing 75 n n C09 C10 9Z9 sing 76 n n C07 C06 9Z9 sing 77 n n C10 C02 9Z9 sing 78 n n C06 C02 9Z9 sing 79 n n C06 C05 9Z9 sing 80 n n C02 C01 9Z9 sing 81 n n C02 C03 9Z9 sing 82 n n C05 C04 9Z9 sing 83 n n C03 C04 9Z9 sing 84 n n C03 C74 9Z9 sing 85 n n C04 O72 9Z9 sing 86 n n C74 C75 9Z9 sing 87 n n C74 C73 9Z9 sing 88 n n O72 C73 9Z9 sing 89 n n C73 O80 9Z9 sing 90 n n C73 C76 9Z9 sing 91 n n O80 C79 9Z9 sing 92 n n C76 C77 9Z9 sing 93 n n C79 C78 9Z9 sing 94 n n C77 C78 9Z9 sing 95 n n C78 C81 9Z9 sing 96 n n C01 H1 9Z9 sing 97 n n C01 H2 9Z9 sing 98 n n C01 H3 9Z9 sing 99 n n C03 H4 9Z9 sing 100 n n C04 H5 9Z9 sing 101 n n C05 H6 9Z9 sing 102 n n C05 H7 9Z9 sing 103 n n C06 H8 9Z9 sing 104 n n C07 H9 9Z9 sing 105 n n C08 H10 9Z9 sing 106 n n C09 H11 9Z9 sing 107 n n C09 H12 9Z9 sing 108 n n C10 H13 9Z9 sing 109 n n C10 H14 9Z9 sing 110 n n C12 H15 9Z9 sing 111 n n C12 H16 9Z9 sing 112 n n C12 H17 9Z9 sing 113 n n C14 H18 9Z9 sing 114 n n C15 H19 9Z9 sing 115 n n C15 H20 9Z9 sing 116 n n C16 H21 9Z9 sing 117 n n C16 H22 9Z9 sing 118 n n C17 H23 9Z9 sing 119 n n C18 H24 9Z9 sing 120 n n C18 H25 9Z9 sing 121 n n C19 H26 9Z9 sing 122 n n C19 H27 9Z9 sing 123 n n C21 H28 9Z9 sing 124 n n C21 H29 9Z9 sing 125 n n C22 H30 9Z9 sing 126 n n C22 H31 9Z9 sing 127 n n C23 H32 9Z9 sing 128 n n C24 H33 9Z9 sing 129 n n C24 H34 9Z9 sing 130 n n C26 H35 9Z9 sing 131 n n C26 H36 9Z9 sing 132 n n C26 H37 9Z9 sing 133 n n C48 H38 9Z9 sing 134 n n C48 H39 9Z9 sing 135 n n C50 H40 9Z9 sing 136 n n C50 H41 9Z9 sing 137 n n C50 H42 9Z9 sing 138 n n C74 H43 9Z9 sing 139 n n C75 H44 9Z9 sing 140 n n C75 H45 9Z9 sing 141 n n C75 H46 9Z9 sing 142 n n C76 H47 9Z9 sing 143 n n C76 H48 9Z9 sing 144 n n C77 H49 9Z9 sing 145 n n C77 H50 9Z9 sing 146 n n C78 H51 9Z9 sing 147 n n C79 H52 9Z9 sing 148 n n C79 H53 9Z9 sing 149 n n C81 H54 9Z9 sing 150 n n C81 H55 9Z9 sing 151 n n C81 H56 9Z9 sing 152 n n # _atom_sites.entry_id 8UO8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 701 703 NAG NAG . C 2 NAG A 1 702 705 NAG NAG . D 2 NAG A 1 703 706 NAG NAG . E 3 X3U A 1 704 707 X3U 943 . F 4 PS1 A 1 705 711 PS1 PS1 . G 5 9Z9 A 1 706 715 9Z9 9Z9 . H 5 9Z9 A 1 707 716 9Z9 9Z9 . I 6 43Y A 1 708 723 43Y 43Y . J 7 Y01 A 1 709 724 Y01 Y01 . K 8 HOH A 1 801 722 HOH HOH . K 8 HOH A 2 802 714 HOH HOH . K 8 HOH A 3 803 721 HOH HOH . K 8 HOH A 4 804 712 HOH HOH . K 8 HOH A 5 805 719 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 9Z9 . . . G 5 133.391 111.429 116.039 1 28.45 ? C01 9Z9 706 A 1 HETATM 2 C C02 9Z9 . . . G 5 134.49 110.499 116.58 1 28.45 ? C02 9Z9 706 A 1 HETATM 3 C C03 9Z9 . . . G 5 133.936 109.148 117.067 1 28.45 ? C03 9Z9 706 A 1 HETATM 4 C C04 9Z9 . . . G 5 133.65 108.38 115.731 1 28.45 ? C04 9Z9 706 A 1 HETATM 5 C C05 9Z9 . . . G 5 134.491 109.101 114.647 1 28.45 ? C05 9Z9 706 A 1 HETATM 6 C C06 9Z9 . . . G 5 135.436 109.981 115.458 1 28.45 ? C06 9Z9 706 A 1 HETATM 7 C C07 9Z9 . . . G 5 136.13 111.125 114.733 1 28.45 ? C07 9Z9 706 A 1 HETATM 8 C C08 9Z9 . . . G 5 136.951 111.897 115.778 1 28.45 ? C08 9Z9 706 A 1 HETATM 9 C C09 9Z9 . . . G 5 136.066 112.378 116.929 1 28.45 ? C09 9Z9 706 A 1 HETATM 10 C C10 9Z9 . . . G 5 135.328 111.222 117.619 1 28.45 ? C10 9Z9 706 A 1 HETATM 11 C C11 9Z9 . . . G 5 137.731 113.042 115.14 1 28.45 ? C11 9Z9 706 A 1 HETATM 12 C C12 9Z9 . . . G 5 136.784 114.209 114.847 1 28.45 ? C12 9Z9 706 A 1 HETATM 13 C C13 9Z9 . . . G 5 138.391 112.651 113.855 1 28.45 ? C13 9Z9 706 A 1 HETATM 14 C C14 9Z9 . . . G 5 137.992 111.638 113.144 1 28.45 ? C14 9Z9 706 A 1 HETATM 15 C C15 9Z9 . . . G 5 137.081 110.549 113.678 1 28.45 ? C15 9Z9 706 A 1 HETATM 16 C C16 9Z9 . . . G 5 139.33 113.649 113.189 1 28.45 ? C16 9Z9 706 A 1 HETATM 17 C C17 9Z9 . . . G 5 140.313 114.261 114.2 1 28.45 ? C17 9Z9 706 A 1 HETATM 18 C C18 9Z9 . . . G 5 139.606 114.673 115.499 1 28.45 ? C18 9Z9 706 A 1 HETATM 19 C C19 9Z9 . . . G 5 138.819 113.526 116.098 1 28.45 ? C19 9Z9 706 A 1 HETATM 20 O O20 9Z9 . . . G 5 140.903 115.413 113.581 1 28.45 ? O20 9Z9 706 A 1 HETATM 21 C C21 9Z9 . . . G 5 141.783 116.205 114.389 1 28.45 ? C21 9Z9 706 A 1 HETATM 22 C C22 9Z9 . . . G 5 142.341 117.366 113.563 1 28.45 ? C22 9Z9 706 A 1 HETATM 23 C C23 9Z9 . . . G 5 142.223 118.67 114.359 1 28.45 ? C23 9Z9 706 A 1 HETATM 24 C C24 9Z9 . . . G 5 143.053 118.588 115.642 1 28.45 ? C24 9Z9 706 A 1 HETATM 25 O O25 9Z9 . . . G 5 143.222 119.898 116.185 1 28.45 ? O25 9Z9 706 A 1 HETATM 26 C C26 9Z9 . . . G 5 144.036 119.936 117.359 1 28.45 ? C26 9Z9 706 A 1 HETATM 27 C C48 9Z9 . . . G 5 142.715 119.845 113.513 1 28.45 ? C48 9Z9 706 A 1 HETATM 28 O O49 9Z9 . . . G 5 142.126 121.057 113.993 1 28.45 ? O49 9Z9 706 A 1 HETATM 29 C C50 9Z9 . . . G 5 142.272 122.175 113.115 1 28.45 ? C50 9Z9 706 A 1 HETATM 30 O O72 9Z9 . . . G 5 132.246 108.592 115.478 1 28.45 ? O72 9Z9 706 A 1 HETATM 31 C C73 9Z9 . . . G 5 131.605 108.514 116.765 1 28.45 ? C73 9Z9 706 A 1 HETATM 32 C C74 9Z9 . . . G 5 132.543 109.254 117.737 1 28.45 ? C74 9Z9 706 A 1 HETATM 33 C C75 9Z9 . . . G 5 132.548 108.556 119.098 1 28.45 ? C75 9Z9 706 A 1 HETATM 34 C C76 9Z9 . . . G 5 130.256 109.221 116.726 1 28.45 ? C76 9Z9 706 A 1 HETATM 35 C C77 9Z9 . . . G 5 129.293 108.429 115.836 1 28.45 ? C77 9Z9 706 A 1 HETATM 36 C C78 9Z9 . . . G 5 129.177 107.013 116.4 1 28.45 ? C78 9Z9 706 A 1 HETATM 37 C C79 9Z9 . . . G 5 130.568 106.371 116.378 1 28.45 ? C79 9Z9 706 A 1 HETATM 38 O O80 9Z9 . . . G 5 131.461 107.157 117.174 1 28.45 ? O80 9Z9 706 A 1 HETATM 39 C C81 9Z9 . . . G 5 128.201 106.193 115.552 1 28.45 ? C81 9Z9 706 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #