data_8UO8 # _model_server_result.job_id Dre_cboRosHz6TK7b_FhHQ _model_server_result.datetime_utc '2024-11-07 10:34:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uo8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":708}' # _entry.id 8UO8 # _exptl.entry_id 8UO8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 370.356 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R)-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-2-propanoyloxy-propyl] propanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UO8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 492 A CYS 492 1_555 A SG CYS 512 A CYS 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 441 A ASN 441 1_555 B C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 491 A ASN 491 1_555 D C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 516 A ASN 516 1_555 C C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C14 H29 N O8 P 1' _chem_comp.formula_weight 370.356 _chem_comp.id 43Y _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R)-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-2-propanoyloxy-propyl] propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,2-dipropionyl-sn-glycero-3-phosphocholine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 N 43Y sing 1 n n C8 N 43Y sing 2 n n O1P P 43Y doub 3 n n N C7 43Y sing 4 n n N C5 43Y sing 5 n n O2P P 43Y sing 6 n n O4P P 43Y sing 7 n n O4P C4 43Y sing 8 n n P O3P 43Y sing 9 n n C4 C5 43Y sing 10 n n O3P C1 43Y sing 11 n n C1 C2 43Y sing 12 n n O2 C2 43Y sing 13 n n O2 C31 43Y sing 14 n n C2 C3 43Y sing 15 n n C3 O3 43Y sing 16 n n C32 C31 43Y sing 17 n n C32 C33 43Y sing 18 n n C31 O31 43Y doub 19 n n O3 C11 43Y sing 20 n n C11 O11 43Y doub 21 n n C3 H2 43Y sing 22 n n C3 H3 43Y sing 23 n n C2 H4 43Y sing 24 n n C1 H5 43Y sing 25 n n C1 H6 43Y sing 26 n n O2P H7 43Y sing 27 n n C4 H8 43Y sing 28 n n C4 H9 43Y sing 29 n n C5 H10 43Y sing 30 n n C5 H11 43Y sing 31 n n C7 H12 43Y sing 32 n n C7 H13 43Y sing 33 n n C7 H14 43Y sing 34 n n C8 H15 43Y sing 35 n n C8 H16 43Y sing 36 n n C8 H17 43Y sing 37 n n C6 H18 43Y sing 38 n n C6 H19 43Y sing 39 n n C6 H20 43Y sing 40 n n C32 H21 43Y sing 41 n n C32 H22 43Y sing 42 n n C33 H23 43Y sing 43 n n C33 H24 43Y sing 44 n n C33 H25 43Y sing 45 n n C11 C9 43Y sing 46 n n C9 C10 43Y sing 47 n n C9 H1 43Y sing 48 n n C9 H26 43Y sing 49 n n C10 H27 43Y sing 50 n n C10 H28 43Y sing 51 n n C10 H29 43Y sing 52 n n # _atom_sites.entry_id 8UO8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 701 703 NAG NAG . C 2 NAG A 1 702 705 NAG NAG . D 2 NAG A 1 703 706 NAG NAG . E 3 X3U A 1 704 707 X3U 943 . F 4 PS1 A 1 705 711 PS1 PS1 . G 5 9Z9 A 1 706 715 9Z9 9Z9 . H 5 9Z9 A 1 707 716 9Z9 9Z9 . I 6 43Y A 1 708 723 43Y 43Y . J 7 Y01 A 1 709 724 Y01 Y01 . K 8 HOH A 1 801 722 HOH HOH . K 8 HOH A 2 802 714 HOH HOH . K 8 HOH A 3 803 721 HOH HOH . K 8 HOH A 4 804 712 HOH HOH . K 8 HOH A 5 805 719 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 43Y . . . I 6 137.679 115.45 109.264 1 32.21 ? C11 43Y 708 A 1 HETATM 2 O O11 43Y . . . I 6 137.074 116.046 110.139 1 32.21 ? O11 43Y 708 A 1 HETATM 3 O O3 43Y . . . I 6 138.8 116.006 108.707 1 32.21 ? O3 43Y 708 A 1 HETATM 4 C C3 43Y . . . I 6 139.382 117.112 109.396 1 32.21 ? C3 43Y 708 A 1 HETATM 5 C C2 43Y . . . I 6 139.849 118.126 108.332 1 32.21 ? C2 43Y 708 A 1 HETATM 6 C C1 43Y . . . I 6 140.294 119.412 109.052 1 32.21 ? C1 43Y 708 A 1 HETATM 7 O O3P 43Y . . . I 6 139.664 120.497 108.46 1 32.21 ? O3P 43Y 708 A 1 HETATM 8 P P 43Y . . . I 6 140.48 121.262 107.221 1 32.21 ? P 43Y 708 A 1 HETATM 9 O O1P 43Y . . . I 6 141.549 122.077 107.817 1 32.21 ? O1P 43Y 708 A 1 HETATM 10 O O2P 43Y . . . I 6 140.542 120.388 106.004 1 32.21 ? O2P 43Y 708 A 1 HETATM 11 O O4P 43Y . . . I 6 139.305 122.479 106.817 1 32.21 ? O4P 43Y 708 A 1 HETATM 12 C C4 43Y . . . I 6 139.425 123.1 105.603 1 32.21 ? C4 43Y 708 A 1 HETATM 13 C C5 43Y . . . I 6 140.454 124.238 105.763 1 32.21 ? C5 43Y 708 A 1 HETATM 14 N N 43Y . . . I 6 140.841 124.807 104.385 1 32.21 ? N 43Y 708 A 1 HETATM 15 C C7 43Y . . . I 6 139.609 125.049 103.538 1 32.21 ? C7 43Y 708 A 1 HETATM 16 C C8 43Y . . . I 6 141.542 126.12 104.591 1 32.21 ? C8 43Y 708 A 1 HETATM 17 C C6 43Y . . . I 6 141.784 123.856 103.659 1 32.21 ? C6 43Y 708 A 1 HETATM 18 O O2 43Y . . . I 6 138.75 118.457 107.491 1 32.21 ? O2 43Y 708 A 1 HETATM 19 C C31 43Y . . . I 6 138.708 117.801 106.296 1 32.21 ? C31 43Y 708 A 1 HETATM 20 O O31 43Y . . . I 6 139.517 118.073 105.427 1 32.21 ? O31 43Y 708 A 1 HETATM 21 C C32 43Y . . . I 6 137.639 116.754 106.111 1 32.21 ? C32 43Y 708 A 1 HETATM 22 C C33 43Y . . . I 6 137.46 116.519 104.618 1 32.21 ? C33 43Y 708 A 1 HETATM 23 C C9 43Y . . . I 6 137.257 114.109 108.731 1 32.21 ? C9 43Y 708 A 1 HETATM 24 C C10 43Y . . . I 6 135.79 114.191 108.324 1 32.21 ? C10 43Y 708 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #