data_8UO8 # _model_server_result.job_id us7riylSDke85HaBi3QDCw _model_server_result.datetime_utc '2024-11-07 10:42:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uo8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":709}' # _entry.id 8UO8 # _exptl.entry_id 8UO8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UO8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 492 A CYS 492 1_555 A SG CYS 512 A CYS 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 441 A ASN 441 1_555 B C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 491 A ASN 491 1_555 D C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 516 A ASN 516 1_555 C C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 687 n n CBA CAB Y01 sing 688 n n CBA CAN Y01 sing 689 n n CAN CAJ Y01 sing 690 n n CAJ CAO Y01 sing 691 n n CAO CBB Y01 sing 692 n n CBB CAC Y01 sing 693 n n CBB CBE Y01 sing 694 n n CBE CAP Y01 sing 695 n n CBE CBI Y01 sing 696 n n CAP CAQ Y01 sing 697 n n CAQ CBG Y01 sing 698 n n CBG CBI Y01 sing 699 n n CBG CBD Y01 sing 700 n n CBI CAE Y01 sing 701 n n CBI CAU Y01 sing 702 n n CAU CAS Y01 sing 703 n n CAS CBF Y01 sing 704 n n CBF CBD Y01 sing 705 n n CBF CBH Y01 sing 706 n n CBD CAK Y01 sing 707 n n CAK CAI Y01 sing 708 n n CAI CAZ Y01 doub 709 n n CAZ CAV Y01 sing 710 n n CAZ CBH Y01 sing 711 n n CAV CBC Y01 sing 712 n n CBH CAD Y01 sing 713 n n CBH CAT Y01 sing 714 n n CAT CAR Y01 sing 715 n n CAR CBC Y01 sing 716 n n CBC OAW Y01 sing 717 n n OAW CAY Y01 sing 718 n n CAY OAG Y01 doub 719 n n CAY CAM Y01 sing 720 n n CAM CAL Y01 sing 721 n n CAL CAX Y01 sing 722 n n CAX OAH Y01 sing 723 n n CAX OAF Y01 doub 724 n n CAA HAA1 Y01 sing 725 n n CAA HAA2 Y01 sing 726 n n CAA HAA3 Y01 sing 727 n n CBA HBA Y01 sing 728 n n CAB HAB1 Y01 sing 729 n n CAB HAB2 Y01 sing 730 n n CAB HAB3 Y01 sing 731 n n CAN HAN1 Y01 sing 732 n n CAN HAN2 Y01 sing 733 n n CAJ HAJ1 Y01 sing 734 n n CAJ HAJ2 Y01 sing 735 n n CAO HAO1 Y01 sing 736 n n CAO HAO2 Y01 sing 737 n n CBB HBB Y01 sing 738 n n CAC HAC1 Y01 sing 739 n n CAC HAC2 Y01 sing 740 n n CAC HAC3 Y01 sing 741 n n CBE HBE Y01 sing 742 n n CAP HAP1 Y01 sing 743 n n CAP HAP2 Y01 sing 744 n n CAQ HAQ1 Y01 sing 745 n n CAQ HAQ2 Y01 sing 746 n n CBG HBG Y01 sing 747 n n CBD HBD Y01 sing 748 n n CAE HAE1 Y01 sing 749 n n CAE HAE2 Y01 sing 750 n n CAE HAE3 Y01 sing 751 n n CAU HAU1 Y01 sing 752 n n CAU HAU2 Y01 sing 753 n n CAS HAS1 Y01 sing 754 n n CAS HAS2 Y01 sing 755 n n CBF HBF Y01 sing 756 n n CAK HAK1 Y01 sing 757 n n CAK HAK2 Y01 sing 758 n n CAI HAI Y01 sing 759 n n CAV HAV1 Y01 sing 760 n n CAV HAV2 Y01 sing 761 n n CBC HBC Y01 sing 762 n n CAD HAD1 Y01 sing 763 n n CAD HAD2 Y01 sing 764 n n CAD HAD3 Y01 sing 765 n n CAT HAT1 Y01 sing 766 n n CAT HAT2 Y01 sing 767 n n CAR HAR1 Y01 sing 768 n n CAR HAR2 Y01 sing 769 n n CAM HAM1 Y01 sing 770 n n CAM HAM2 Y01 sing 771 n n CAL HAL1 Y01 sing 772 n n CAL HAL2 Y01 sing 773 n n OAH HAH Y01 sing 774 n n # _atom_sites.entry_id 8UO8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 701 703 NAG NAG . C 2 NAG A 1 702 705 NAG NAG . D 2 NAG A 1 703 706 NAG NAG . E 3 X3U A 1 704 707 X3U 943 . F 4 PS1 A 1 705 711 PS1 PS1 . G 5 9Z9 A 1 706 715 9Z9 9Z9 . H 5 9Z9 A 1 707 716 9Z9 9Z9 . I 6 43Y A 1 708 723 43Y 43Y . J 7 Y01 A 1 709 724 Y01 Y01 . K 8 HOH A 1 801 722 HOH HOH . K 8 HOH A 2 802 714 HOH HOH . K 8 HOH A 3 803 721 HOH HOH . K 8 HOH A 4 804 712 HOH HOH . K 8 HOH A 5 805 719 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . J 7 111.152 108.289 145.272 1 28.15 ? CAA Y01 709 A 1 HETATM 2 C CBA Y01 . . . J 7 112.267 108.831 144.373 1 28.15 ? CBA Y01 709 A 1 HETATM 3 C CAB Y01 . . . J 7 111.825 110.185 143.811 1 28.15 ? CAB Y01 709 A 1 HETATM 4 C CAN Y01 . . . J 7 112.529 107.85 143.224 1 28.15 ? CAN Y01 709 A 1 HETATM 5 C CAJ Y01 . . . J 7 114.008 107.872 142.823 1 28.15 ? CAJ Y01 709 A 1 HETATM 6 C CAO Y01 . . . J 7 114.124 107.844 141.296 1 28.15 ? CAO Y01 709 A 1 HETATM 7 C CBB Y01 . . . J 7 115.51 107.363 140.854 1 28.15 ? CBB Y01 709 A 1 HETATM 8 C CAC Y01 . . . J 7 115.325 106.275 139.797 1 28.15 ? CAC Y01 709 A 1 HETATM 9 C CBE Y01 . . . J 7 116.291 108.552 140.271 1 28.15 ? CBE Y01 709 A 1 HETATM 10 C CAP Y01 . . . J 7 116.5 109.599 141.392 1 28.15 ? CAP Y01 709 A 1 HETATM 11 C CAQ Y01 . . . J 7 117.962 110.095 141.268 1 28.15 ? CAQ Y01 709 A 1 HETATM 12 C CBG Y01 . . . J 7 118.362 109.637 139.861 1 28.15 ? CBG Y01 709 A 1 HETATM 13 C CBI Y01 . . . J 7 117.708 108.227 139.785 1 28.15 ? CBI Y01 709 A 1 HETATM 14 C CAE Y01 . . . J 7 118.377 107.214 140.732 1 28.15 ? CAE Y01 709 A 1 HETATM 15 C CAU Y01 . . . J 7 117.84 107.791 138.337 1 28.15 ? CAU Y01 709 A 1 HETATM 16 C CAS Y01 . . . J 7 119.331 107.68 137.968 1 28.15 ? CAS Y01 709 A 1 HETATM 17 C CBF Y01 . . . J 7 120.101 108.983 138.213 1 28.15 ? CBF Y01 709 A 1 HETATM 18 C CBD Y01 . . . J 7 119.861 109.557 139.616 1 28.15 ? CBD Y01 709 A 1 HETATM 19 C CAK Y01 . . . J 7 120.434 110.976 139.62 1 28.15 ? CAK Y01 709 A 1 HETATM 20 C CAI Y01 . . . J 7 121.888 110.921 139.257 1 28.15 ? CAI Y01 709 A 1 HETATM 21 C CAZ Y01 . . . J 7 122.376 110.031 138.446 1 28.15 ? CAZ Y01 709 A 1 HETATM 22 C CAV Y01 . . . J 7 123.845 110.155 138.077 1 28.15 ? CAV Y01 709 A 1 HETATM 23 C CBH Y01 . . . J 7 121.603 108.835 137.968 1 28.15 ? CBH Y01 709 A 1 HETATM 24 C CAD Y01 . . . J 7 122.141 107.603 138.71 1 28.15 ? CAD Y01 709 A 1 HETATM 25 C CAT Y01 . . . J 7 121.862 108.631 136.473 1 28.15 ? CAT Y01 709 A 1 HETATM 26 C CAR Y01 . . . J 7 123.365 108.607 136.179 1 28.15 ? CAR Y01 709 A 1 HETATM 27 C CBC Y01 . . . J 7 124.013 109.934 136.575 1 28.15 ? CBC Y01 709 A 1 HETATM 28 O OAW Y01 . . . J 7 125.429 109.885 136.257 1 28.15 ? OAW Y01 709 A 1 HETATM 29 C CAY Y01 . . . J 7 125.919 110.827 135.433 1 28.15 ? CAY Y01 709 A 1 HETATM 30 O OAG Y01 . . . J 7 125.829 110.688 134.237 1 28.15 ? OAG Y01 709 A 1 HETATM 31 C CAM Y01 . . . J 7 126.589 112.053 135.995 1 28.15 ? CAM Y01 709 A 1 HETATM 32 C CAL Y01 . . . J 7 127.746 111.632 136.904 1 28.15 ? CAL Y01 709 A 1 HETATM 33 C CAX Y01 . . . J 7 129.009 112.34 136.487 1 28.15 ? CAX Y01 709 A 1 HETATM 34 O OAH Y01 . . . J 7 129.545 112.103 135.279 1 28.15 ? OAH Y01 709 A 1 HETATM 35 O OAF Y01 . . . J 7 129.541 113.121 137.24 1 28.15 ? OAF Y01 709 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #