data_8UO9 # _model_server_result.job_id Z1GmKx199MPBGiX5tsHYdg _model_server_result.datetime_utc '2025-02-15 08:20:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uo9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":802}' # _entry.id 8UO9 # _exptl.entry_id 8UO9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UO9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 D 1 NAG D 1 NAG 3 n C NAG 2 D 2 NAG D 2 NAG 3 n C BMA 3 D 3 BMA D 3 BMA 4 n D NAG 1 G 1 NAG G 1 NAG 4 n D NAG 2 G 2 NAG G 2 NAG 4 n E NAG 1 I 1 NAG I 1 NAG 4 n E NAG 2 I 2 NAG I 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 436 A ASN 498 1_555 E C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 A ND2 ASN 486 A ASN 548 1_555 D C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 A ND2 ASN 511 A ASN 573 1_555 C C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 C O4 NAG . D NAG 1 1_555 C C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 C O4 NAG . D NAG 2 1_555 C C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 D O4 NAG . G NAG 1 1_555 D C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 E O4 NAG . I NAG 1 1_555 E C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 563 n n CBA CAB Y01 sing 564 n n CBA CAN Y01 sing 565 n n CAN CAJ Y01 sing 566 n n CAJ CAO Y01 sing 567 n n CAO CBB Y01 sing 568 n n CBB CAC Y01 sing 569 n n CBB CBE Y01 sing 570 n n CBE CAP Y01 sing 571 n n CBE CBI Y01 sing 572 n n CAP CAQ Y01 sing 573 n n CAQ CBG Y01 sing 574 n n CBG CBI Y01 sing 575 n n CBG CBD Y01 sing 576 n n CBI CAE Y01 sing 577 n n CBI CAU Y01 sing 578 n n CAU CAS Y01 sing 579 n n CAS CBF Y01 sing 580 n n CBF CBD Y01 sing 581 n n CBF CBH Y01 sing 582 n n CBD CAK Y01 sing 583 n n CAK CAI Y01 sing 584 n n CAI CAZ Y01 doub 585 n n CAZ CAV Y01 sing 586 n n CAZ CBH Y01 sing 587 n n CAV CBC Y01 sing 588 n n CBH CAD Y01 sing 589 n n CBH CAT Y01 sing 590 n n CAT CAR Y01 sing 591 n n CAR CBC Y01 sing 592 n n CBC OAW Y01 sing 593 n n OAW CAY Y01 sing 594 n n CAY OAG Y01 doub 595 n n CAY CAM Y01 sing 596 n n CAM CAL Y01 sing 597 n n CAL CAX Y01 sing 598 n n CAX OAH Y01 sing 599 n n CAX OAF Y01 doub 600 n n CAA HAA1 Y01 sing 601 n n CAA HAA2 Y01 sing 602 n n CAA HAA3 Y01 sing 603 n n CBA HBA Y01 sing 604 n n CAB HAB1 Y01 sing 605 n n CAB HAB2 Y01 sing 606 n n CAB HAB3 Y01 sing 607 n n CAN HAN1 Y01 sing 608 n n CAN HAN2 Y01 sing 609 n n CAJ HAJ1 Y01 sing 610 n n CAJ HAJ2 Y01 sing 611 n n CAO HAO1 Y01 sing 612 n n CAO HAO2 Y01 sing 613 n n CBB HBB Y01 sing 614 n n CAC HAC1 Y01 sing 615 n n CAC HAC2 Y01 sing 616 n n CAC HAC3 Y01 sing 617 n n CBE HBE Y01 sing 618 n n CAP HAP1 Y01 sing 619 n n CAP HAP2 Y01 sing 620 n n CAQ HAQ1 Y01 sing 621 n n CAQ HAQ2 Y01 sing 622 n n CBG HBG Y01 sing 623 n n CBD HBD Y01 sing 624 n n CAE HAE1 Y01 sing 625 n n CAE HAE2 Y01 sing 626 n n CAE HAE3 Y01 sing 627 n n CAU HAU1 Y01 sing 628 n n CAU HAU2 Y01 sing 629 n n CAS HAS1 Y01 sing 630 n n CAS HAS2 Y01 sing 631 n n CBF HBF Y01 sing 632 n n CAK HAK1 Y01 sing 633 n n CAK HAK2 Y01 sing 634 n n CAI HAI Y01 sing 635 n n CAV HAV1 Y01 sing 636 n n CAV HAV2 Y01 sing 637 n n CBC HBC Y01 sing 638 n n CAD HAD1 Y01 sing 639 n n CAD HAD2 Y01 sing 640 n n CAD HAD3 Y01 sing 641 n n CAT HAT1 Y01 sing 642 n n CAT HAT2 Y01 sing 643 n n CAR HAR1 Y01 sing 644 n n CAR HAR2 Y01 sing 645 n n CAM HAM1 Y01 sing 646 n n CAM HAM2 Y01 sing 647 n n CAL HAL1 Y01 sing 648 n n CAL HAL2 Y01 sing 649 n n OAH HAH Y01 sing 650 n n # _atom_sites.entry_id 8UO9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 X49 A 1 801 801 X49 761 . G 6 Y01 A 1 802 802 Y01 Y01 . H 7 PS1 A 1 803 803 PS1 PS1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . G 6 115.107 112.597 104.779 1 62.16 ? CAA Y01 802 A 1 HETATM 2 C CBA Y01 . . . G 6 115.918 111.35 105.088 1 59.94 ? CBA Y01 802 A 1 HETATM 3 C CAB Y01 . . . G 6 115.222 110.521 106.152 1 61.66 ? CAB Y01 802 A 1 HETATM 4 C CAN Y01 . . . G 6 117.336 111.705 105.52 1 61.38 ? CAN Y01 802 A 1 HETATM 5 C CAJ Y01 . . . G 6 118.112 112.572 104.562 1 58.93 ? CAJ Y01 802 A 1 HETATM 6 C CAO Y01 . . . G 6 119.585 112.253 104.528 1 58.87 ? CAO Y01 802 A 1 HETATM 7 C CBB Y01 . . . G 6 120.262 112.497 103.174 1 60.17 ? CBB Y01 802 A 1 HETATM 8 C CAC Y01 . . . G 6 121.518 113.342 103.346 1 63.06 ? CAC Y01 802 A 1 HETATM 9 C CBE Y01 . . . G 6 120.528 111.152 102.478 1 57.43 ? CBE Y01 802 A 1 HETATM 10 C CAP Y01 . . . G 6 119.213 110.356 102.255 1 57.82 ? CAP Y01 802 A 1 HETATM 11 C CAQ Y01 . . . G 6 119.323 109.665 100.887 1 54.25 ? CAQ Y01 802 A 1 HETATM 12 C CBG Y01 . . . G 6 120.809 109.754 100.565 1 51.73 ? CBG Y01 802 A 1 HETATM 13 C CBI Y01 . . . G 6 121.243 111.132 101.094 1 54.01 ? CBI Y01 802 A 1 HETATM 14 C CAE Y01 . . . G 6 120.732 112.289 100.216 1 58.69 ? CAE Y01 802 A 1 HETATM 15 C CAU Y01 . . . G 6 122.773 111.101 101.121 1 58.63 ? CAU Y01 802 A 1 HETATM 16 C CAS Y01 . . . G 6 123.36 110.818 99.733 1 57.62 ? CAS Y01 802 A 1 HETATM 17 C CBF Y01 . . . G 6 122.798 109.557 99.052 1 52.37 ? CBF Y01 802 A 1 HETATM 18 C CBD Y01 . . . G 6 121.264 109.461 99.146 1 52.34 ? CBD Y01 802 A 1 HETATM 19 C CAK Y01 . . . G 6 120.8 108.076 98.713 1 59.43 ? CAK Y01 802 A 1 HETATM 20 C CAI Y01 . . . G 6 121.551 107.57 97.526 1 60.95 ? CAI Y01 802 A 1 HETATM 21 C CAZ Y01 . . . G 6 122.577 108.183 96.958 1 58.58 ? CAZ Y01 802 A 1 HETATM 22 C CAV Y01 . . . G 6 123.154 107.663 95.661 1 58.11 ? CAV Y01 802 A 1 HETATM 23 C CBH Y01 . . . G 6 123.288 109.378 97.587 1 56.26 ? CBH Y01 802 A 1 HETATM 24 C CAD Y01 . . . G 6 122.994 110.618 96.723 1 54.6 ? CAD Y01 802 A 1 HETATM 25 C CAT Y01 . . . G 6 124.81 109.101 97.583 1 56.29 ? CAT Y01 802 A 1 HETATM 26 C CAR Y01 . . . G 6 125.34 108.598 96.238 1 61.02 ? CAR Y01 802 A 1 HETATM 27 C CBC Y01 . . . G 6 124.618 107.344 95.828 1 58.74 ? CBC Y01 802 A 1 HETATM 28 O OAW Y01 . . . G 6 125.132 106.851 94.554 1 59.65 ? OAW Y01 802 A 1 HETATM 29 C CAY Y01 . . . G 6 124.576 105.774 93.989 1 63.41 ? CAY Y01 802 A 1 HETATM 30 O OAG Y01 . . . G 6 124.296 105.716 92.827 1 62.97 ? OAG Y01 802 A 1 HETATM 31 C CAM Y01 . . . G 6 124.364 104.636 94.963 1 62.55 ? CAM Y01 802 A 1 HETATM 32 C CAL Y01 . . . G 6 123.878 103.339 94.349 1 62.47 ? CAL Y01 802 A 1 HETATM 33 C CAX Y01 . . . G 6 124.043 102.119 95.239 1 61.9 ? CAX Y01 802 A 1 HETATM 34 O OAH Y01 . . . G 6 123.016 101.541 95.645 1 61.11 ? OAH Y01 802 A 1 HETATM 35 O OAF Y01 . . . G 6 125.198 101.736 95.503 1 61.3 ? OAF Y01 802 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 35 #