data_8UPK # _model_server_result.job_id p-L2fRMffX1-II1UzI-yQw _model_server_result.datetime_utc '2024-12-21 14:48:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8upk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 8UPK # _exptl.entry_id 8UPK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UPK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 13 A CYS 13 1_555 C CBC BLA . A BLA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale2 B SG CYS 13 B CYS 13 1_555 D CBC BLA . B BLA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 8UPK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BLA A 1 801 990 BLA BLA . D 2 BLA B 1 801 990 BLA BLA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . C 2 148.337 179.684 126.751 1 133.79 ? CHA BLA 801 A 1 HETATM 2 N NA BLA . . . C 2 150.451 179.75 128.25 1 133.79 ? NA BLA 801 A 1 HETATM 3 C C1A BLA . . . C 2 149.598 179.124 127.405 1 133.79 ? C1A BLA 801 A 1 HETATM 4 C C2A BLA . . . C 2 150.066 177.856 127.201 1 133.79 ? C2A BLA 801 A 1 HETATM 5 C C3A BLA . . . C 2 151.187 177.692 127.913 1 133.79 ? C3A BLA 801 A 1 HETATM 6 C C4A BLA . . . C 2 151.439 178.876 128.574 1 133.79 ? C4A BLA 801 A 1 HETATM 7 C CMA BLA . . . C 2 151.993 176.39 127.94 1 133.79 ? CMA BLA 801 A 1 HETATM 8 C CAA BLA . . . C 2 149.418 176.798 126.315 1 133.79 ? CAA BLA 801 A 1 HETATM 9 C CBA BLA . . . C 2 149.806 177.051 124.86 1 133.79 ? CBA BLA 801 A 1 HETATM 10 C CGA BLA . . . C 2 151.076 176.271 124.534 1 133.79 ? CGA BLA 801 A 1 HETATM 11 O O1A BLA . . . C 2 152.198 176.838 124.605 1 133.79 ? O1A BLA 801 A 1 HETATM 12 O O2A BLA . . . C 2 150.998 175.063 124.194 1 133.79 ? O2A BLA 801 A 1 HETATM 13 C CHB BLA . . . C 2 152.609 179.179 129.515 1 133.79 ? CHB BLA 801 A 1 HETATM 14 N NB BLA . . . C 2 154.602 178.661 128.007 1 133.79 ? NB BLA 801 A 1 HETATM 15 C C1B BLA . . . C 2 153.788 178.639 129.306 1 133.79 ? C1B BLA 801 A 1 HETATM 16 C C2B BLA . . . C 2 154.589 177.838 130.273 1 133.79 ? C2B BLA 801 A 1 HETATM 17 C C3B BLA . . . C 2 155.8 177.4 129.677 1 133.79 ? C3B BLA 801 A 1 HETATM 18 C C4B BLA . . . C 2 155.892 177.869 128.268 1 133.79 ? C4B BLA 801 A 1 HETATM 19 C CMB BLA . . . C 2 154.171 177.536 131.71 1 133.79 ? CMB BLA 801 A 1 HETATM 20 O OB BLA . . . C 2 156.777 177.67 127.504 1 133.79 ? OB BLA 801 A 1 HETATM 21 C CAB BLA . . . C 2 156.859 176.565 130.391 1 133.79 ? CAB BLA 801 A 1 HETATM 22 C CBB BLA . . . C 2 156.829 175.254 130.308 1 133.79 ? CBB BLA 801 A 1 HETATM 23 N NC BLA . . . C 2 149.144 183.675 130.095 1 133.79 ? NC BLA 801 A 1 HETATM 24 C C1C BLA . . . C 2 150.06 184.599 130.915 1 133.79 ? C1C BLA 801 A 1 HETATM 25 C C2C BLA . . . C 2 149.336 185.889 131.112 1 133.79 ? C2C BLA 801 A 1 HETATM 26 C C3C BLA . . . C 2 147.984 185.762 130.424 1 133.79 ? C3C BLA 801 A 1 HETATM 27 C C4C BLA . . . C 2 147.838 184.423 129.793 1 133.79 ? C4C BLA 801 A 1 HETATM 28 C CMC BLA . . . C 2 150.125 187.002 130.426 1 133.79 ? CMC BLA 801 A 1 HETATM 29 O OC BLA . . . C 2 151.142 184.338 131.314 1 133.79 ? OC BLA 801 A 1 HETATM 30 C CAC BLA . . . C 2 147.076 186.71 130.39 1 133.79 ? CAC BLA 801 A 1 HETATM 31 C CBC BLA . . . C 2 145.821 186.576 131.187 1 133.79 ? CBC BLA 801 A 1 HETATM 32 C CHD BLA . . . C 2 146.803 183.984 129.117 1 133.79 ? CHD BLA 801 A 1 HETATM 33 N ND BLA . . . C 2 148.052 181.901 127.973 1 133.79 ? ND BLA 801 A 1 HETATM 34 C C1D BLA . . . C 2 146.836 182.649 128.389 1 133.79 ? C1D BLA 801 A 1 HETATM 35 C C2D BLA . . . C 2 145.626 181.895 127.972 1 133.79 ? C2D BLA 801 A 1 HETATM 36 C C3D BLA . . . C 2 146.073 180.672 127.299 1 133.79 ? C3D BLA 801 A 1 HETATM 37 C C4D BLA . . . C 2 147.6 180.636 127.282 1 133.79 ? C4D BLA 801 A 1 HETATM 38 C CMD BLA . . . C 2 144.171 182.311 128.198 1 133.79 ? CMD BLA 801 A 1 HETATM 39 C CAD BLA . . . C 2 145.147 179.606 126.719 1 133.79 ? CAD BLA 801 A 1 HETATM 40 C CBD BLA . . . C 2 145.129 179.689 125.199 1 133.79 ? CBD BLA 801 A 1 HETATM 41 C CGD BLA . . . C 2 145.416 178.299 124.638 1 133.79 ? CGD BLA 801 A 1 HETATM 42 O O1D BLA . . . C 2 146.368 177.621 125.104 1 133.79 ? O1D BLA 801 A 1 HETATM 43 O O2D BLA . . . C 2 144.696 177.831 123.719 1 133.79 ? O2D BLA 801 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #