data_8UPK
#
_model_server_result.job_id            cdWY96XkXO-ozwEdbniv3Q 
_model_server_result.datetime_utc      '2024-10-10 06:28:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8upk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    8UPK 
#
_exptl.entry_id    8UPK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              582.646 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BILIVERDINE IX ALPHA' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8UPK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UPK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 13 A CYS 13 1_555 C CBC BLA . A BLA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale2 B SG CYS 13 B CYS 13 1_555 D CBC BLA . B BLA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
#
_chem_comp.formula           'C33 H34 N4 O6' 
_chem_comp.formula_weight    582.646 
_chem_comp.id                BLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BILIVERDINE IX ALPHA' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A BLA sing 70 n n 
CHA C4D BLA doub 71 z n 
CHA HHA BLA sing 72 n n 
NA C1A BLA sing 73 n y 
NA C4A BLA sing 74 n y 
NA HA BLA sing 75 n n 
C1A C2A BLA doub 76 n y 
C2A C3A BLA sing 77 n y 
C2A CAA BLA sing 78 n n 
C3A C4A BLA doub 79 n y 
C3A CMA BLA sing 80 n n 
C4A CHB BLA sing 81 n n 
CMA HMA1 BLA sing 82 n n 
CMA HMA2 BLA sing 83 n n 
CMA HMA3 BLA sing 84 n n 
CAA CBA BLA sing 85 n n 
CAA HAA1 BLA sing 86 n n 
CAA HAA2 BLA sing 87 n n 
CBA CGA BLA sing 88 n n 
CBA HBA1 BLA sing 89 n n 
CBA HBA2 BLA sing 90 n n 
CGA O1A BLA doub 91 n n 
CGA O2A BLA sing 92 n n 
O2A H2A BLA sing 93 n n 
CHB C1B BLA doub 94 z n 
CHB HHB BLA sing 95 n n 
NB C1B BLA sing 96 n n 
NB C4B BLA sing 97 n n 
NB HB BLA sing 98 n n 
C1B C2B BLA sing 99 n n 
C2B C3B BLA doub 100 n n 
C2B CMB BLA sing 101 n n 
C3B C4B BLA sing 102 n n 
C3B CAB BLA sing 103 n n 
C4B OB BLA doub 104 n n 
CMB HMB1 BLA sing 105 n n 
CMB HMB2 BLA sing 106 n n 
CMB HMB3 BLA sing 107 n n 
CAB CBB BLA doub 108 n n 
CAB HAB BLA sing 109 n n 
CBB HBB1 BLA sing 110 n n 
CBB HBB2 BLA sing 111 n n 
NC C1C BLA sing 112 n n 
NC C4C BLA sing 113 n n 
NC HC BLA sing 114 n n 
C1C C2C BLA sing 115 n n 
C1C OC BLA doub 116 n n 
C2C C3C BLA doub 117 n n 
C2C CMC BLA sing 118 n n 
C3C C4C BLA sing 119 n n 
C3C CAC BLA sing 120 n n 
C4C CHD BLA doub 121 z n 
CMC HMC1 BLA sing 122 n n 
CMC HMC2 BLA sing 123 n n 
CMC HMC3 BLA sing 124 n n 
CAC CBC BLA doub 125 n n 
CAC HAC BLA sing 126 n n 
CBC HBC1 BLA sing 127 n n 
CBC HBC2 BLA sing 128 n n 
CHD C1D BLA sing 129 n n 
CHD HHD BLA sing 130 n n 
ND C1D BLA doub 131 n n 
ND C4D BLA sing 132 n n 
C1D C2D BLA sing 133 n n 
C2D C3D BLA doub 134 n n 
C2D CMD BLA sing 135 n n 
C3D C4D BLA sing 136 n n 
C3D CAD BLA sing 137 n n 
CMD HMD1 BLA sing 138 n n 
CMD HMD2 BLA sing 139 n n 
CMD HMD3 BLA sing 140 n n 
CAD CBD BLA sing 141 n n 
CAD HAD1 BLA sing 142 n n 
CAD HAD2 BLA sing 143 n n 
CBD CGD BLA sing 144 n n 
CBD HBD1 BLA sing 145 n n 
CBD HBD2 BLA sing 146 n n 
CGD O1D BLA doub 147 n n 
CGD O2D BLA sing 148 n n 
O2D H2D BLA sing 149 n n 
#
_atom_sites.entry_id                     8UPK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BLA A 1 801 990 BLA BLA . 
D 2 BLA B 1 801 990 BLA BLA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA BLA . . . D 2 154.222 123.642 126.483 1 169.96 ? CHA BLA 801 B 1 
HETATM 2 N NA BLA . . . D 2 152.724 122.8 128.379 1 169.96 ? NA BLA 801 B 1 
HETATM 3 C C1A BLA . . . D 2 153.25 123.806 127.648 1 169.96 ? C1A BLA 801 B 1 
HETATM 4 C C2A BLA . . . D 2 152.763 124.99 128.14 1 169.96 ? C2A BLA 801 B 1 
HETATM 5 C C3A BLA . . . D 2 151.943 124.706 129.169 1 169.96 ? C3A BLA 801 B 1 
HETATM 6 C C4A BLA . . . D 2 151.916 123.337 129.32 1 169.96 ? C4A BLA 801 B 1 
HETATM 7 C CMA BLA . . . D 2 151.187 125.74 130.008 1 169.96 ? CMA BLA 801 B 1 
HETATM 8 C CAA BLA . . . D 2 153.098 126.385 127.61 1 169.96 ? CAA BLA 801 B 1 
HETATM 9 C CBA BLA . . . D 2 151.898 126.965 126.856 1 169.96 ? CBA BLA 801 B 1 
HETATM 10 C CGA BLA . . . D 2 152.172 127.009 125.355 1 169.96 ? CGA BLA 801 B 1 
HETATM 11 O O1A BLA . . . D 2 151.262 126.702 124.539 1 169.96 ? O1A BLA 801 B 1 
HETATM 12 O O2A BLA . . . D 2 153.304 127.357 124.932 1 169.96 ? O2A BLA 801 B 1 
HETATM 13 C CHB BLA . . . D 2 151.133 122.516 130.348 1 169.96 ? CHB BLA 801 B 1 
HETATM 14 N NB BLA . . . D 2 149.468 122.835 132.233 1 169.96 ? NB BLA 801 B 1 
HETATM 15 C C1B BLA . . . D 2 149.933 122.843 130.772 1 169.96 ? C1B BLA 801 B 1 
HETATM 16 C C2B BLA . . . D 2 148.753 123.293 129.976 1 169.96 ? C2B BLA 801 B 1 
HETATM 17 C C3B BLA . . . D 2 147.65 123.55 130.829 1 169.96 ? C3B BLA 801 B 1 
HETATM 18 C C4B BLA . . . D 2 148.004 123.29 132.249 1 169.96 ? C4B BLA 801 B 1 
HETATM 19 C CMB BLA . . . D 2 148.712 123.465 128.459 1 169.96 ? CMB BLA 801 B 1 
HETATM 20 O OB BLA . . . D 2 147.302 123.411 133.195 1 169.96 ? OB BLA 801 B 1 
HETATM 21 C CAB BLA . . . D 2 146.283 124.027 130.358 1 169.96 ? CAB BLA 801 B 1 
HETATM 22 C CBB BLA . . . D 2 145.195 123.503 130.872 1 169.96 ? CBB BLA 801 B 1 
HETATM 23 N NC BLA . . . D 2 154.335 118.715 128.291 1 169.96 ? NC BLA 801 B 1 
HETATM 24 C C1C BLA . . . D 2 153.743 117.551 129.099 1 169.96 ? C1C BLA 801 B 1 
HETATM 25 C C2C BLA . . . D 2 154.867 116.643 129.467 1 169.96 ? C2C BLA 801 B 1 
HETATM 26 C C3C BLA . . . D 2 156.143 117.241 128.892 1 169.96 ? C3C BLA 801 B 1 
HETATM 27 C C4C BLA . . . D 2 155.851 118.508 128.169 1 169.96 ? C4C BLA 801 B 1 
HETATM 28 C CMC BLA . . . D 2 154.979 116.589 130.987 1 169.96 ? CMC BLA 801 B 1 
HETATM 29 O OC BLA . . . D 2 152.605 117.399 129.378 1 169.96 ? OC BLA 801 B 1 
HETATM 30 C CAC BLA . . . D 2 157.339 116.714 129.022 1 169.96 ? CAC BLA 801 B 1 
HETATM 31 C CBC BLA . . . D 2 157.575 115.283 128.665 1 169.96 ? CBC BLA 801 B 1 
HETATM 32 C CHD BLA . . . D 2 156.719 119.276 127.553 1 169.96 ? CHD BLA 801 B 1 
HETATM 33 N ND BLA . . . D 2 155.088 121.391 127.289 1 169.96 ? ND BLA 801 B 1 
HETATM 34 C C1D BLA . . . D 2 156.329 120.633 126.987 1 169.96 ? C1D BLA 801 B 1 
HETATM 35 C C2D BLA . . . D 2 157.155 121.41 126.028 1 169.96 ? C2D BLA 801 B 1 
HETATM 36 C C3D BLA . . . D 2 156.44 122.654 125.726 1 169.96 ? C3D BLA 801 B 1 
HETATM 37 C C4D BLA . . . D 2 155.124 122.681 126.502 1 169.96 ? C4D BLA 801 B 1 
HETATM 38 C CMD BLA . . . D 2 158.51 120.987 125.46 1 169.96 ? CMD BLA 801 B 1 
HETATM 39 C CAD BLA . . . D 2 156.93 123.75 124.785 1 169.96 ? CAD BLA 801 B 1 
HETATM 40 C CBD BLA . . . D 2 156.256 123.596 123.43 1 169.96 ? CBD BLA 801 B 1 
HETATM 41 C CGD BLA . . . D 2 156.808 124.66 122.486 1 169.96 ? CGD BLA 801 B 1 
HETATM 42 O O1D BLA . . . D 2 157.861 124.438 121.834 1 169.96 ? O1D BLA 801 B 1 
HETATM 43 O O2D BLA . . . D 2 156.214 125.76 122.359 1 169.96 ? O2D BLA 801 B 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           43 
#