data_8UPM # _model_server_result.job_id Zp8rLxZI3TpFEGRnnIGPKA _model_server_result.datetime_utc '2024-12-22 01:49:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8upm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 8UPM # _exptl.entry_id 8UPM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UPM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 13 A CYS 13 1_555 C CBC BLA . A BLA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale2 B SG CYS 13 B CYS 13 1_555 D CBC BLA . B BLA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 8UPM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BLA A 1 801 801 BLA BLA . D 2 BLA B 1 801 801 BLA BLA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . D 2 169.191 140.769 144.045 1 139.74 ? CHA BLA 801 B 1 HETATM 2 N NA BLA . . . D 2 167.995 140.432 146.296 1 139.74 ? NA BLA 801 B 1 HETATM 3 C C1A BLA . . . D 2 168.421 141.228 145.285 1 139.74 ? C1A BLA 801 B 1 HETATM 4 C C2A BLA . . . D 2 168.045 142.517 145.576 1 139.74 ? C2A BLA 801 B 1 HETATM 5 C C3A BLA . . . D 2 167.396 142.503 146.756 1 139.74 ? C3A BLA 801 B 1 HETATM 6 C C4A BLA . . . D 2 167.354 141.206 147.203 1 139.74 ? C4A BLA 801 B 1 HETATM 7 C CMA BLA . . . D 2 166.798 143.714 147.475 1 139.74 ? CMA BLA 801 B 1 HETATM 8 C CAA BLA . . . D 2 168.32 143.75 144.714 1 139.74 ? CAA BLA 801 B 1 HETATM 9 C CBA BLA . . . D 2 167.054 144.139 143.948 1 139.74 ? CBA BLA 801 B 1 HETATM 10 C CGA BLA . . . D 2 167.362 144.244 142.456 1 139.74 ? CGA BLA 801 B 1 HETATM 11 O O1A BLA . . . D 2 167.49 143.2 141.762 1 139.74 ? O1A BLA 801 B 1 HETATM 12 O O2A BLA . . . D 2 167.487 145.376 141.92 1 139.74 ? O2A BLA 801 B 1 HETATM 13 C CHB BLA . . . D 2 166.724 140.723 148.51 1 139.74 ? CHB BLA 801 B 1 HETATM 14 N NB BLA . . . D 2 164.977 139.535 149.882 1 139.74 ? NB BLA 801 B 1 HETATM 15 C C1B BLA . . . D 2 165.466 140.368 148.689 1 139.74 ? C1B BLA 801 B 1 HETATM 16 C C2B BLA . . . D 2 164.236 140.651 147.877 1 139.74 ? C2B BLA 801 B 1 HETATM 17 C C3B BLA . . . D 2 163.095 140.057 148.483 1 139.74 ? C3B BLA 801 B 1 HETATM 18 C C4B BLA . . . D 2 163.462 139.345 149.735 1 139.74 ? C4B BLA 801 B 1 HETATM 19 C CMB BLA . . . D 2 164.156 141.449 146.575 1 139.74 ? CMB BLA 801 B 1 HETATM 20 O OB BLA . . . D 2 162.739 138.752 150.463 1 139.74 ? OB BLA 801 B 1 HETATM 21 C CAB BLA . . . D 2 161.678 140.143 147.928 1 139.74 ? CAB BLA 801 B 1 HETATM 22 C CBB BLA . . . D 2 160.985 141.249 148.083 1 139.74 ? CBB BLA 801 B 1 HETATM 23 N NC BLA . . . D 2 169.331 136.328 146.65 1 139.74 ? NC BLA 801 B 1 HETATM 24 C C1C BLA . . . D 2 168.611 135.135 147.297 1 139.74 ? C1C BLA 801 B 1 HETATM 25 C C2C BLA . . . D 2 169.622 134.051 147.476 1 139.74 ? C2C BLA 801 B 1 HETATM 26 C C3C BLA . . . D 2 170.956 134.574 146.949 1 139.74 ? C3C BLA 801 B 1 HETATM 27 C C4C BLA . . . D 2 170.808 135.965 146.436 1 139.74 ? C4C BLA 801 B 1 HETATM 28 C CMC BLA . . . D 2 169.747 133.744 148.968 1 139.74 ? CMC BLA 801 B 1 HETATM 29 O OC BLA . . . D 2 167.467 135.084 147.596 1 139.74 ? OC BLA 801 B 1 HETATM 30 C CAC BLA . . . D 2 172.075 133.884 146.942 1 139.74 ? CAC BLA 801 B 1 HETATM 31 C CBC BLA . . . D 2 173.092 134.06 148.021 1 139.74 ? CBC BLA 801 B 1 HETATM 32 C CHD BLA . . . D 2 171.735 136.73 145.903 1 139.74 ? CHD BLA 801 B 1 HETATM 33 N ND BLA . . . D 2 170.18 138.804 145.291 1 139.74 ? ND BLA 801 B 1 HETATM 34 C C1D BLA . . . D 2 171.3 137.876 144.999 1 139.74 ? C1D BLA 801 B 1 HETATM 35 C C2D BLA . . . D 2 171.909 138.241 143.693 1 139.74 ? C2D BLA 801 B 1 HETATM 36 C C3D BLA . . . D 2 171.173 139.401 143.165 1 139.74 ? C3D BLA 801 B 1 HETATM 37 C C4D BLA . . . D 2 170.065 139.786 144.15 1 139.74 ? C4D BLA 801 B 1 HETATM 38 C CMD BLA . . . D 2 173.09 137.54 143.017 1 139.74 ? CMD BLA 801 B 1 HETATM 39 C CAD BLA . . . D 2 171.473 140.098 141.84 1 139.74 ? CAD BLA 801 B 1 HETATM 40 C CBD BLA . . . D 2 172.05 141.485 142.088 1 139.74 ? CBD BLA 801 B 1 HETATM 41 C CGD BLA . . . D 2 171.433 142.457 141.085 1 139.74 ? CGD BLA 801 B 1 HETATM 42 O O1D BLA . . . D 2 171.949 142.599 139.946 1 139.74 ? O1D BLA 801 B 1 HETATM 43 O O2D BLA . . . D 2 170.407 143.114 141.397 1 139.74 ? O2D BLA 801 B 1 # _model_server_stats.io_time_ms 123 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #