data_8UPN # _model_server_result.job_id qSDQCgy5MBdoqwRUhAxRgQ _model_server_result.datetime_utc '2025-02-26 19:27:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8upn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 8UPN # _exptl.entry_id 8UPN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 132.115 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-hydroxy-3-methyl-2-oxobutanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UPN _cell.length_a 130.72 _cell.length_b 130.72 _cell.length_c 130.72 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UPN _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall 'I 2 2 3' _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 192 A ASP 192 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc2 A OD1 ASP 192 A ASP 192 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc3 A OD2 ASP 192 A ASP 192 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? metalc ? metalc4 A OE2 GLU 196 A GLU 196 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc5 A OE1 GLU 232 A GLU 232 1_555 B MG MG . A MG 401 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc6 B MG MG . A MG 401 1_555 F O07 WXU . A WXU 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc7 B MG MG . A MG 401 1_555 G O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc8 B MG MG . A MG 401 1_555 G O HOH . A HOH 504 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc9 C MG MG . A MG 402 1_555 F O09 WXU . A WXU 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? metalc ? metalc10 C MG MG . A MG 402 1_555 F O01 WXU . A WXU 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc11 C MG MG . A MG 402 1_555 G O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc12 C MG MG . A MG 402 1_555 G O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? # _chem_comp.formula 'C5 H8 O4' _chem_comp.formula_weight 132.115 _chem_comp.id WXU _chem_comp.mon_nstd_flag . _chem_comp.name '3-hydroxy-3-methyl-2-oxobutanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O09 C02 WXU doub 458 n n O01 C02 WXU sing 459 n n C02 C03 WXU sing 460 n n C03 O08 WXU doub 461 n n C03 C04 WXU sing 462 n n O07 C04 WXU sing 463 n n C04 C06 WXU sing 464 n n C04 C05 WXU sing 465 n n C05 H1 WXU sing 466 n n C05 H2 WXU sing 467 n n C05 H3 WXU sing 468 n n C06 H4 WXU sing 469 n n C06 H5 WXU sing 470 n n C06 H6 WXU sing 471 n n O01 H7 WXU sing 472 n n O07 H8 WXU sing 473 n n # _atom_sites.entry_id 8UPN _atom_sites.fract_transf_matrix[1][1] 0.00765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 332 MG MG . C 2 MG A 1 402 333 MG MG . D 3 CL A 1 403 340 CL CL . E 4 NDP A 1 404 401 NDP NDP . F 5 WXU A 1 405 350 WXU LIG . G 6 HOH A 1 501 4 HOH HOH . G 6 HOH A 2 502 10 HOH HOH . G 6 HOH A 3 503 8 HOH HOH . G 6 HOH A 4 504 1 HOH HOH . G 6 HOH A 5 505 5 HOH HOH . G 6 HOH A 6 506 2 HOH HOH . G 6 HOH A 7 507 3 HOH HOH . G 6 HOH A 8 508 28 HOH HOH . G 6 HOH A 9 509 23 HOH HOH . G 6 HOH A 10 510 24 HOH HOH . G 6 HOH A 11 511 26 HOH HOH . G 6 HOH A 12 512 22 HOH HOH . G 6 HOH A 13 513 30 HOH HOH . G 6 HOH A 14 514 12 HOH HOH . G 6 HOH A 15 515 16 HOH HOH . G 6 HOH A 16 516 27 HOH HOH . G 6 HOH A 17 517 11 HOH HOH . G 6 HOH A 18 518 17 HOH HOH . G 6 HOH A 19 519 9 HOH HOH . G 6 HOH A 20 520 20 HOH HOH . G 6 HOH A 21 521 25 HOH HOH . G 6 HOH A 22 522 15 HOH HOH . G 6 HOH A 23 523 29 HOH HOH . G 6 HOH A 24 524 6 HOH HOH . G 6 HOH A 25 525 18 HOH HOH . G 6 HOH A 26 526 21 HOH HOH . G 6 HOH A 27 527 13 HOH HOH . G 6 HOH A 28 528 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 WXU . . . F 5 37.741 6.125 -14.237 0 79.16 ? C02 WXU 405 A 1 HETATM 2 C C03 WXU . . . F 5 38.322 6.276 -12.824 1 81.85 ? C03 WXU 405 A 1 HETATM 3 C C04 WXU . . . F 5 38.237 5.133 -11.806 1 81.52 ? C04 WXU 405 A 1 HETATM 4 C C05 WXU . . . F 5 37.184 5.458 -10.751 1 81.11 ? C05 WXU 405 A 1 HETATM 5 C C06 WXU . . . F 5 39.588 4.995 -11.111 1 80.95 ? C06 WXU 405 A 1 HETATM 6 O O01 WXU . . . F 5 37.26 7.136 -14.826 1 80.75 ? O01 WXU 405 A 1 HETATM 7 O O07 WXU . . . F 5 37.911 3.917 -12.435 1 82.06 ? O07 WXU 405 A 1 HETATM 8 O O08 WXU . . . F 5 38.84 7.298 -12.513 1 84.83 ? O08 WXU 405 A 1 HETATM 9 O O09 WXU . . . F 5 37.703 4.998 -14.814 1 72.71 ? O09 WXU 405 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #