data_8UPS # _model_server_result.job_id ErBMRhAvJ0ldlh6V_jMHXA _model_server_result.datetime_utc '2024-11-21 22:29:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ups # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8UPS # _exptl.entry_id 8UPS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 550.691 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UPS _cell.length_a 45.59 _cell.length_b 64.09 _cell.length_c 105.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UPS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C8 _struct_conn.ptnr2_label_comp_id I70 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id I70 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.83 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H46 N6 O6' _chem_comp.formula_weight 550.691 _chem_comp.id I70 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 C30 I70 sing 152 n n C26 C30 I70 sing 153 n n C30 C11 I70 sing 154 n n C30 C31 I70 sing 155 n n C13 C16 I70 sing 156 n n C13 N13 I70 sing 157 n n O29 C9 I70 doub 158 n n C16 C34 I70 sing 159 n n C16 C18 I70 sing 160 n n O38 C15 I70 doub 161 n n C11 N10 I70 sing 162 n n C11 C12 I70 sing 163 n n C29 C7 I70 sing 164 n n C9 N10 I70 sing 165 n n C9 N8 I70 sing 166 n n N13 C12 I70 sing 167 n n N13 C14 I70 sing 168 n n N2 C1 I70 sing 169 n n C34 C18 I70 sing 170 n n C34 C14 I70 sing 171 n n C25 C18 I70 sing 172 n n C12 O33 I70 doub 173 n n C21 C22 I70 sing 174 n n C21 C20 I70 sing 175 n n C18 C23 I70 sing 176 n n C15 C14 I70 sing 177 n n C15 N16 I70 sing 178 n n C22 N23 I70 sing 179 n n C7 N8 I70 sing 180 n n C7 C28 I70 sing 181 n n C7 C27 I70 sing 182 n n O9 C8 I70 sing 183 n n C1 C8 I70 sing 184 n n C1 O5 I70 doub 185 n n C17 N16 I70 sing 186 n n C17 C8 I70 sing 187 n n C17 C19 I70 sing 188 n n C20 C19 I70 sing 189 n n C20 C24 I70 sing 190 n n N23 C24 I70 sing 191 n n C24 O26 I70 doub 192 n n C11 H1 I70 sing 193 n n C13 H2 I70 sing 194 n n C13 H3 I70 sing 195 n n C14 H4 I70 sing 196 n n C16 H5 I70 sing 197 n n C17 H6 I70 sing 198 n n C19 H7 I70 sing 199 n n C19 H8 I70 sing 200 n n C20 H9 I70 sing 201 n n C21 H10 I70 sing 202 n n C21 H11 I70 sing 203 n n C22 H12 I70 sing 204 n n C22 H13 I70 sing 205 n n C23 H14 I70 sing 206 n n C23 H15 I70 sing 207 n n C23 H16 I70 sing 208 n n C25 H17 I70 sing 209 n n C25 H18 I70 sing 210 n n C25 H19 I70 sing 211 n n C26 H20 I70 sing 212 n n C26 H21 I70 sing 213 n n C26 H22 I70 sing 214 n n C27 H23 I70 sing 215 n n C27 H24 I70 sing 216 n n C27 H25 I70 sing 217 n n C28 H26 I70 sing 218 n n C28 H27 I70 sing 219 n n C28 H28 I70 sing 220 n n C29 H29 I70 sing 221 n n C29 H30 I70 sing 222 n n C29 H31 I70 sing 223 n n C31 H32 I70 sing 224 n n C31 H33 I70 sing 225 n n C31 H34 I70 sing 226 n n C32 H35 I70 sing 227 n n C32 H36 I70 sing 228 n n C32 H37 I70 sing 229 n n C34 H38 I70 sing 230 n n C8 H39 I70 sing 231 n n N10 H40 I70 sing 232 n n N16 H41 I70 sing 233 n n N2 H42 I70 sing 234 n n N2 H43 I70 sing 235 n n N23 H44 I70 sing 236 n n N8 H45 I70 sing 237 n n O9 H46 I70 sing 238 n n # _atom_sites.entry_id 8UPS _atom_sites.fract_transf_matrix[1][1] 0.021935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I70 A 1 401 401 I70 LIG . C 3 PO4 A 1 402 1 PO4 PO4 . D 4 HOH A 1 501 10 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 31 HOH HOH . D 4 HOH A 4 504 3 HOH HOH . D 4 HOH A 5 505 1 HOH HOH . D 4 HOH A 6 506 25 HOH HOH . D 4 HOH A 7 507 22 HOH HOH . D 4 HOH A 8 508 16 HOH HOH . D 4 HOH A 9 509 6 HOH HOH . D 4 HOH A 10 510 7 HOH HOH . D 4 HOH A 11 511 24 HOH HOH . D 4 HOH A 12 512 11 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 29 HOH HOH . D 4 HOH A 15 515 23 HOH HOH . D 4 HOH A 16 516 5 HOH HOH . D 4 HOH A 17 517 32 HOH HOH . D 4 HOH A 18 518 14 HOH HOH . D 4 HOH A 19 519 28 HOH HOH . D 4 HOH A 20 520 12 HOH HOH . D 4 HOH A 21 521 18 HOH HOH . D 4 HOH A 22 522 33 HOH HOH . D 4 HOH A 23 523 26 HOH HOH . D 4 HOH A 24 524 27 HOH HOH . D 4 HOH A 25 525 4 HOH HOH . D 4 HOH A 26 526 17 HOH HOH . D 4 HOH A 27 527 30 HOH HOH . D 4 HOH A 28 528 35 HOH HOH . D 4 HOH A 29 529 15 HOH HOH . D 4 HOH A 30 530 9 HOH HOH . D 4 HOH A 31 531 36 HOH HOH . D 4 HOH A 32 532 34 HOH HOH . D 4 HOH A 33 533 21 HOH HOH . D 4 HOH A 34 534 19 HOH HOH . D 4 HOH A 35 535 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I70 . . . B 2 18.121 11.118 22.224 1 33.52 ? C1 I70 401 A 1 HETATM 2 C C11 I70 . . . B 2 20.095 15.301 29.604 1 34.17 ? C11 I70 401 A 1 HETATM 3 C C12 I70 . . . B 2 19.267 15.281 28.313 1 33.36 ? C12 I70 401 A 1 HETATM 4 C C13 I70 . . . B 2 20.904 16.8 27.142 1 32.74 ? C13 I70 401 A 1 HETATM 5 C C14 I70 . . . B 2 19.049 15.743 25.944 1 33 ? C14 I70 401 A 1 HETATM 6 C C15 I70 . . . B 2 19.262 14.298 25.474 1 32.93 ? C15 I70 401 A 1 HETATM 7 C C16 I70 . . . B 2 20.887 17.378 25.732 1 32.81 ? C16 I70 401 A 1 HETATM 8 C C17 I70 . . . B 2 18.214 12.309 24.522 1 32.66 ? C17 I70 401 A 1 HETATM 9 C C18 I70 . . . B 2 19.731 18.254 25.316 1 32.87 ? C18 I70 401 A 1 HETATM 10 C C19 I70 . . . B 2 17.239 11.381 25.249 1 32.15 ? C19 I70 401 A 1 HETATM 11 C C20 I70 . . . B 2 17.581 11.154 26.734 1 31.62 ? C20 I70 401 A 1 HETATM 12 C C21 I70 . . . B 2 18.882 10.375 27.021 1 31.34 ? C21 I70 401 A 1 HETATM 13 C C22 I70 . . . B 2 18.548 9.501 28.241 1 31.11 ? C22 I70 401 A 1 HETATM 14 C C23 I70 . . . B 2 18.838 18.832 26.415 1 32.73 ? C23 I70 401 A 1 HETATM 15 C C24 I70 . . . B 2 16.511 10.346 27.444 1 31.68 ? C24 I70 401 A 1 HETATM 16 C C25 I70 . . . B 2 19.905 19.194 24.122 1 32.72 ? C25 I70 401 A 1 HETATM 17 C C26 I70 . . . B 2 19.616 12.87 30.206 1 34.04 ? C26 I70 401 A 1 HETATM 18 C C27 I70 . . . B 2 18.298 19.724 31.786 1 36.61 ? C27 I70 401 A 1 HETATM 19 C C28 I70 . . . B 2 16.976 18.637 33.599 1 36.3 ? C28 I70 401 A 1 HETATM 20 C C29 I70 . . . B 2 19.457 18.778 33.796 1 36.05 ? C29 I70 401 A 1 HETATM 21 C C30 I70 . . . B 2 20.709 13.922 29.989 1 33.92 ? C30 I70 401 A 1 HETATM 22 C C31 I70 . . . B 2 21.657 13.435 28.891 1 33.62 ? C31 I70 401 A 1 HETATM 23 C C32 I70 . . . B 2 21.502 14.085 31.287 1 33.75 ? C32 I70 401 A 1 HETATM 24 C C34 I70 . . . B 2 19.703 16.773 25.007 1 32.89 ? C34 I70 401 A 1 HETATM 25 C C7 I70 . . . B 2 18.289 18.615 32.831 1 36.35 ? C7 I70 401 A 1 HETATM 26 C C8 I70 . . . B 2 17.981 12.421 23.001 1 33.29 ? C8 I70 401 A 1 HETATM 27 C C9 I70 . . . B 2 19.372 17.043 31.184 1 35.57 ? C9 I70 401 A 1 HETATM 28 N N10 I70 . . . B 2 19.218 15.815 30.641 1 35.11 ? N10 I70 401 A 1 HETATM 29 N N13 I70 . . . B 2 19.727 15.924 27.226 1 33 ? N13 I70 401 A 1 HETATM 30 N N16 I70 . . . B 2 18.161 13.642 25.108 1 32.55 ? N16 I70 401 A 1 HETATM 31 N N2 I70 . . . B 2 18.91 11.117 21.156 1 33.67 ? N2 I70 401 A 1 HETATM 32 N N23 I70 . . . B 2 17.099 9.393 28.174 1 31.29 ? N23 I70 401 A 1 HETATM 33 N N8 I70 . . . B 2 18.434 17.325 32.118 1 35.82 ? N8 I70 401 A 1 HETATM 34 O O26 I70 . . . B 2 15.302 10.549 27.376 1 31.7 ? O26 I70 401 A 1 HETATM 35 O O29 I70 . . . B 2 20.287 17.805 30.869 1 35.71 ? O29 I70 401 A 1 HETATM 36 O O33 I70 . . . B 2 18.203 14.692 28.298 1 33 ? O33 I70 401 A 1 HETATM 37 O O38 I70 . . . B 2 20.38 13.788 25.468 1 33.47 ? O38 I70 401 A 1 HETATM 38 O O5 I70 . . . B 2 17.491 10.129 22.601 1 33.41 ? O5 I70 401 A 1 HETATM 39 O O9 I70 . . . B 2 18.875 13.4 22.489 1 33.47 ? O9 I70 401 A 1 HETATM 40 H H1 I70 . . . B 2 20.95 15.948 29.459 1 41.01 ? H1 I70 401 A 1 HETATM 41 H H2 I70 . . . B 2 21.843 16.286 27.347 1 39.28 ? H2 I70 401 A 1 HETATM 42 H H3 I70 . . . B 2 20.868 17.599 27.882 1 39.28 ? H3 I70 401 A 1 HETATM 43 H H4 I70 . . . B 2 17.987 15.979 25.948 1 39.6 ? H4 I70 401 A 1 HETATM 44 H H5 I70 . . . B 2 21.864 17.517 25.273 1 39.38 ? H5 I70 401 A 1 HETATM 45 H H6 I70 . . . B 2 19.216 11.903 24.645 1 39.19 ? H6 I70 401 A 1 HETATM 46 H H7 I70 . . . B 2 17.179 10.408 24.764 1 38.58 ? H7 I70 401 A 1 HETATM 47 H H8 I70 . . . B 2 16.221 11.765 25.222 1 38.58 ? H8 I70 401 A 1 HETATM 48 H H9 I70 . . . B 2 17.648 12.113 27.245 1 37.94 ? H9 I70 401 A 1 HETATM 49 H H10 I70 . . . B 2 19.725 11.036 27.216 1 37.61 ? H10 I70 401 A 1 HETATM 50 H H11 I70 . . . B 2 19.184 9.754 26.179 1 37.61 ? H11 I70 401 A 1 HETATM 51 H H12 I70 . . . B 2 18.884 9.968 29.166 1 37.33 ? H12 I70 401 A 1 HETATM 52 H H13 I70 . . . B 2 19.025 8.522 28.212 1 37.33 ? H13 I70 401 A 1 HETATM 53 H H14 I70 . . . B 2 19.403 19.288 27.227 1 39.28 ? H14 I70 401 A 1 HETATM 54 H H15 I70 . . . B 2 18.145 18.119 26.855 1 39.28 ? H15 I70 401 A 1 HETATM 55 H H16 I70 . . . B 2 18.222 19.643 26.029 1 39.28 ? H16 I70 401 A 1 HETATM 56 H H17 I70 . . . B 2 18.94 19.411 23.666 1 39.26 ? H17 I70 401 A 1 HETATM 57 H H18 I70 . . . B 2 20.555 18.768 23.359 1 39.26 ? H18 I70 401 A 1 HETATM 58 H H19 I70 . . . B 2 20.342 20.148 24.41 1 39.26 ? H19 I70 401 A 1 HETATM 59 H H20 I70 . . . B 2 18.886 13.187 30.949 1 40.85 ? H20 I70 401 A 1 HETATM 60 H H21 I70 . . . B 2 19.051 12.626 29.308 1 40.85 ? H21 I70 401 A 1 HETATM 61 H H22 I70 . . . B 2 20.028 11.941 30.597 1 40.85 ? H22 I70 401 A 1 HETATM 62 H H23 I70 . . . B 2 19.318 19.954 31.479 1 43.93 ? H23 I70 401 A 1 HETATM 63 H H24 I70 . . . B 2 17.867 20.66 32.138 1 43.93 ? H24 I70 401 A 1 HETATM 64 H H25 I70 . . . B 2 17.758 19.466 30.876 1 43.93 ? H25 I70 401 A 1 HETATM 65 H H26 I70 . . . B 2 16.116 18.488 32.948 1 43.56 ? H26 I70 401 A 1 HETATM 66 H H27 I70 . . . B 2 16.917 17.86 34.36 1 43.56 ? H27 I70 401 A 1 HETATM 67 H H28 I70 . . . B 2 16.827 19.589 34.107 1 43.56 ? H28 I70 401 A 1 HETATM 68 H H29 I70 . . . B 2 20.436 18.76 33.319 1 43.26 ? H29 I70 401 A 1 HETATM 69 H H30 I70 . . . B 2 19.455 18.011 34.569 1 43.26 ? H30 I70 401 A 1 HETATM 70 H H31 I70 . . . B 2 19.406 19.733 34.315 1 43.26 ? H31 I70 401 A 1 HETATM 71 H H32 I70 . . . B 2 21.148 13.046 28.01 1 40.34 ? H32 I70 401 A 1 HETATM 72 H H33 I70 . . . B 2 22.335 12.655 29.235 1 40.34 ? H33 I70 401 A 1 HETATM 73 H H34 I70 . . . B 2 22.309 14.231 28.535 1 40.34 ? H34 I70 401 A 1 HETATM 74 H H35 I70 . . . B 2 20.856 14.31 32.135 1 40.5 ? H35 I70 401 A 1 HETATM 75 H H36 I70 . . . B 2 22.261 14.865 31.27 1 40.5 ? H36 I70 401 A 1 HETATM 76 H H37 I70 . . . B 2 22.022 13.164 31.546 1 40.5 ? H37 I70 401 A 1 HETATM 77 H H38 I70 . . . B 2 19.722 16.464 23.964 1 39.46 ? H38 I70 401 A 1 HETATM 78 H H40 I70 . . . B 2 18.277 15.438 30.58 1 42.14 ? H40 I70 401 A 1 HETATM 79 H H41 I70 . . . B 2 17.225 14.02 25.214 1 39.06 ? H41 I70 401 A 1 HETATM 80 H H42 I70 . . . B 2 19.412 11.944 20.849 1 40.4 ? H42 I70 401 A 1 HETATM 81 H H43 I70 . . . B 2 19.038 10.276 20.602 1 40.4 ? H43 I70 401 A 1 HETATM 82 H H44 I70 . . . B 2 16.608 8.878 28.897 1 37.55 ? H44 I70 401 A 1 HETATM 83 H H45 I70 . . . B 2 17.753 16.627 32.398 1 42.98 ? H45 I70 401 A 1 HETATM 84 H H46 I70 . . . B 2 18.468 14.301 22.597 1 40.17 ? H46 I70 401 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 84 #