data_8UPS # _model_server_result.job_id rMzhyd8TKmlGzZClqXGdYg _model_server_result.datetime_utc '2024-11-21 22:50:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ups # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8UPS # _exptl.entry_id 8UPS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UPS _cell.length_a 45.59 _cell.length_b 64.09 _cell.length_c 105.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UPS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C8 _struct_conn.ptnr2_label_comp_id I70 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id I70 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.83 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 347 n n P O2 PO4 sing 348 n n P O3 PO4 sing 349 n n P O4 PO4 sing 350 n n # _atom_sites.entry_id 8UPS _atom_sites.fract_transf_matrix[1][1] 0.021935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I70 A 1 401 401 I70 LIG . C 3 PO4 A 1 402 1 PO4 PO4 . D 4 HOH A 1 501 10 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 31 HOH HOH . D 4 HOH A 4 504 3 HOH HOH . D 4 HOH A 5 505 1 HOH HOH . D 4 HOH A 6 506 25 HOH HOH . D 4 HOH A 7 507 22 HOH HOH . D 4 HOH A 8 508 16 HOH HOH . D 4 HOH A 9 509 6 HOH HOH . D 4 HOH A 10 510 7 HOH HOH . D 4 HOH A 11 511 24 HOH HOH . D 4 HOH A 12 512 11 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 29 HOH HOH . D 4 HOH A 15 515 23 HOH HOH . D 4 HOH A 16 516 5 HOH HOH . D 4 HOH A 17 517 32 HOH HOH . D 4 HOH A 18 518 14 HOH HOH . D 4 HOH A 19 519 28 HOH HOH . D 4 HOH A 20 520 12 HOH HOH . D 4 HOH A 21 521 18 HOH HOH . D 4 HOH A 22 522 33 HOH HOH . D 4 HOH A 23 523 26 HOH HOH . D 4 HOH A 24 524 27 HOH HOH . D 4 HOH A 25 525 4 HOH HOH . D 4 HOH A 26 526 17 HOH HOH . D 4 HOH A 27 527 30 HOH HOH . D 4 HOH A 28 528 35 HOH HOH . D 4 HOH A 29 529 15 HOH HOH . D 4 HOH A 30 530 9 HOH HOH . D 4 HOH A 31 531 36 HOH HOH . D 4 HOH A 32 532 34 HOH HOH . D 4 HOH A 33 533 21 HOH HOH . D 4 HOH A 34 534 19 HOH HOH . D 4 HOH A 35 535 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 0.023 0.121 42.785 0.5 45.53 ? P PO4 402 A 1 HETATM 2 O O1 PO4 . . . C 3 0.327 -1.138 41.842 0.5 45.46 ? O1 PO4 402 A 1 HETATM 3 O O2 PO4 . . . C 3 -1.277 0.886 42.251 0.5 45.58 ? O2 PO4 402 A 1 HETATM 4 O O3 PO4 . . . C 3 1.202 1.117 42.733 0.5 45.46 ? O3 PO4 402 A 1 HETATM 5 O O4 PO4 . . . C 3 -0.197 -0.373 44.29 0.5 45.36 ? O4 PO4 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #